Build #8

Build: #8 failed

Job: Clover and Tests failed

Stages & jobs

  1. Default Stage

Build log

The build generated 179 lines of output. Download or view full build log

06-Dec-2024 13:17:00 Build Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8) started building on agent Default Agent
06-Dec-2024 13:17:00
06-Dec-2024 13:17:00 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1
06-Dec-2024 13:17:00 Executing build Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8)
06-Dec-2024 13:17:00 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
06-Dec-2024 13:17:00 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1
06-Dec-2024 13:17:00 Updating source code to revision: c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32
06-Dec-2024 13:17:00 Fetching 'refs/heads/feature/JAL-4386_JAL-4435_reformat_node_labels' from 'http://source.jalview.org/git/jalview.git'.
06-Dec-2024 13:17:00 Checking out revision c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32.
06-Dec-2024 13:17:00 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164
06-Dec-2024 13:17:00    b01e34e..c8ec18c  feature/JAL-4386_JAL-4435_reformat_node_labels -> origin/feature/JAL-4386_JAL-4435_reformat_node_labels
06-Dec-2024 13:17:00 Already on 'feature/JAL-4386_JAL-4435_reformat_node_labels'
06-Dec-2024 13:17:00 Your branch is behind 'origin/feature/JAL-4386_JAL-4435_reformat_node_labels' by 1 commit, and can be fast-forwarded.
06-Dec-2024 13:17:00   (use "git pull" to update your local branch)
06-Dec-2024 13:17:00 HEAD is now at c8ec18c JAL-4435 Corrections on coloured line visualisation
06-Dec-2024 13:17:00 Updated source code to revision: c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32
06-Dec-2024 13:17:00 Finished task 'Checkout Default Repository' with result: Success
06-Dec-2024 13:17:00 Running pre-build action: VCS Version Collector
06-Dec-2024 13:17:00 Running pre-build action: Artifactory Release Staging
06-Dec-2024 13:17:00 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
06-Dec-2024 13:17:00 Bamboo Artifactory Plugin version: 2.6.2
06-Dec-2024 13:17:00
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1
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06-Dec-2024 13:17:00 444
06-Dec-2024 13:17:02
06-Dec-2024 13:17:02 > Configure project :
06-Dec-2024 13:17:02 Using properties from file './utils/channels/default/channel_gradle.properties'
06-Dec-2024 13:17:02 JALVIEW_VERSION is set to '2.11.4.0'
06-Dec-2024 13:17:02 HEADLESS BUILD
06-Dec-2024 13:17:02 J2S ENABLED
06-Dec-2024 13:17:02 Using a LOCAL profile.
06-Dec-2024 13:17:02 eclipseDir exists
06-Dec-2024 13:17:03
06-Dec-2024 13:17:03 > Task :clean
06-Dec-2024 13:17:03 > Task :cleanClover
06-Dec-2024 13:17:03 > Task :cleanTest UP-TO-DATE
06-Dec-2024 13:17:05
06-Dec-2024 13:17:05 > Task :cloverInstrJava
06-Dec-2024 13:17:05 Clover: About to instrument 1102 files
06-Dec-2024 13:17:05 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
06-Dec-2024 13:17:05 Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover.db'.
06-Dec-2024 13:17:05 Processing files at 1.9 source level.
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
06-Dec-2024 13:17:14 Clover all over. Instrumented 1102 files (111 packages).
06-Dec-2024 13:17:17
06-Dec-2024 13:17:17 > Task :cloverInstrTests
06-Dec-2024 13:17:17 Clover: About to instrument test files
06-Dec-2024 13:17:17 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
06-Dec-2024 13:17:17 Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover.db'.
06-Dec-2024 13:17:17 Processing files at 1.9 source level.
06-Dec-2024 13:17:19 Clover all over. Instrumented 290 files (52 packages).
06-Dec-2024 13:17:19 1591 test methods detected.
06-Dec-2024 13:17:19
06-Dec-2024 13:17:19 > Task :cloverInstr
06-Dec-2024 13:17:21
06-Dec-2024 13:17:21 > Task :compileCloverJava
06-Dec-2024 13:17:21 Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons:
06-Dec-2024 13:17:21   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
06-Dec-2024 13:17:21   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
06-Dec-2024 13:17:21   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
06-Dec-2024 13:17:21 Setting target compatibility to 11
06-Dec-2024 13:17:25 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr/jalview/gui/TreePanel.java:798: error: cannot find symbol
06-Dec-2024 13:17:25     __CLR4_4_11qwg1qwgm4crsv6t.R.inc(81816);colorMapPanel.setVisible(showStructureProviderColouredLines.isSelected());
06-Dec-2024 13:17:25                                             ^
06-Dec-2024 13:17:25   symbol:   variable colorMapPanel
06-Dec-2024 13:17:25   location: class TreePanel
06-Dec-2024 13:17:25 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr/jalview/gui/TreePanel.java:805: error: cannot find symbol
06-Dec-2024 13:17:25     __CLR4_4_11qwg1qwgm4crsv6t.R.inc(81819);colorMapPanel.setVisible(showStructureProviderColouredLines.isSelected());
06-Dec-2024 13:17:25                                             ^
06-Dec-2024 13:17:25   symbol:   variable colorMapPanel
06-Dec-2024 13:17:25   location: class TreePanel
06-Dec-2024 13:17:25 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr/jalview/gui/TreePanel.java:812: error: cannot find symbol
06-Dec-2024 13:17:25     __CLR4_4_11qwg1qwgm4crsv6t.R.inc(81822);colorMapPanel.setVisible(showStructureProviderColouredLines.isSelected());
06-Dec-2024 13:17:25                                             ^
06-Dec-2024 13:17:25   symbol:   variable colorMapPanel
06-Dec-2024 13:17:25   location: class TreePanel
06-Dec-2024 13:17:32 Note: Some input files use or override a deprecated API.
06-Dec-2024 13:17:32 Note: Recompile with -Xlint:deprecation for details.
06-Dec-2024 13:17:32 Note: Some input files use unchecked or unsafe operations.
06-Dec-2024 13:17:32 Note: Recompile with -Xlint:unchecked for details.
06-Dec-2024 13:17:32 3 errors
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 > Task :compileCloverJava FAILED
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 FAILURE: Build failed with an exception.
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 * What went wrong:
06-Dec-2024 13:17:32 Execution failed for task ':compileCloverJava'.
06-Dec-2024 13:17:32 > Compilation failed; see the compiler error output for details.
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 * Try:
06-Dec-2024 13:17:32 > Run with --stacktrace option to get the stack trace.
06-Dec-2024 13:17:32 > Run with --info or --debug option to get more log output.
06-Dec-2024 13:17:32 > Run with --scan to get full insights.
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 * Get more help at https://help.gradle.org
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 BUILD FAILED in 31s
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 Execution optimizations have been disabled for 1 invalid unit(s) of work during this build to ensure correctness.
06-Dec-2024 13:17:32 Please consult deprecation warnings for more details.
06-Dec-2024 13:17:32 6 actionable tasks: 5 executed, 1 up-to-date
06-Dec-2024 13:17:32
06-Dec-2024 13:17:32 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0
06-Dec-2024 13:17:32 Finished task 'Run tests with openclover under gradle' with result: Failed
06-Dec-2024 13:17:32 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
06-Dec-2024 13:17:32 Bamboo Artifactory Plugin version: 2.6.2
06-Dec-2024 13:17:32
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport
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bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache
bamboo_planRepository_1_username=
bamboo_planRepository_type=gitv2
USER=bamboo
bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache
bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_repository_46498136_name=Jalview Git
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp
bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1
bamboo_planKey=JB-GDB633
bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git
bamboo_planRepository_username=
HOME=/home/bamboo
bamboo_planRepository_1_branchName=feature/JAL-4386_JAL-4435_reformat_node_labels
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
06-Dec-2024 13:17:32 444
06-Dec-2024 13:17:39
06-Dec-2024 13:17:39 > Configure project :
06-Dec-2024 13:17:39 Using properties from file './utils/channels/default/channel_gradle.properties'
06-Dec-2024 13:17:39 JALVIEW_VERSION is set to '2.11.4.0'
06-Dec-2024 13:17:39 HEADLESS BUILD
06-Dec-2024 13:17:39 J2S ENABLED
06-Dec-2024 13:17:39 Using a LOCAL profile.
06-Dec-2024 13:17:40 eclipseDir exists
06-Dec-2024 13:17:42
06-Dec-2024 13:17:42 > Task :cloverHtmlReport
06-Dec-2024 13:17:42 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
06-Dec-2024 13:17:42 Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/reports/clover'
06-Dec-2024 13:17:52 Done. Processed 115 packages in 10254ms (89ms per package).
06-Dec-2024 13:17:55
06-Dec-2024 13:17:55 > Task :cloverXmlReport
06-Dec-2024 13:17:55 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
06-Dec-2024 13:17:55 Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/reports/clover/clover.xml'
06-Dec-2024 13:17:55
06-Dec-2024 13:17:55 > Task :cloverReport
06-Dec-2024 13:17:55
06-Dec-2024 13:17:55 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
06-Dec-2024 13:17:55
06-Dec-2024 13:17:55 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
06-Dec-2024 13:17:55
06-Dec-2024 13:17:55 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
06-Dec-2024 13:17:55
06-Dec-2024 13:17:55 BUILD SUCCESSFUL in 23s
06-Dec-2024 13:17:55 2 actionable tasks: 2 executed
06-Dec-2024 13:17:56 Finished task 'Clover Report' with result: Success
06-Dec-2024 13:17:56 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
06-Dec-2024 13:17:56 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1...
06-Dec-2024 13:17:56 Failing task since test cases were expected but none were found.
06-Dec-2024 13:17:56 Finished task 'TestNG Parser' with result: Failed
06-Dec-2024 13:17:56 Running post build plugin 'NCover Results Collector'
06-Dec-2024 13:17:56 Running post build plugin 'Artifact Copier'
06-Dec-2024 13:17:56 Publishing an artifact: Clover Report (System)
06-Dec-2024 13:17:57 Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 983.8 ms
06-Dec-2024 13:17:57 Publishing an artifact: TestNG report
06-Dec-2024 13:17:57 Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/reports/tests/test does not exist.
06-Dec-2024 13:17:57 The artifact hasn't been successfully published after 1.333 ms
06-Dec-2024 13:17:57 Running post build plugin 'Artifactory Release Management Staging'
06-Dec-2024 13:17:57 Running post build plugin 'Artifactory Build Info Copier'
06-Dec-2024 13:17:57 Running post build plugin 'Artifactory Gradle Properties Info Copier'
06-Dec-2024 13:17:57 Running post build plugin 'npm Cache Cleanup'
06-Dec-2024 13:17:57 Running post build plugin 'Clover Results Collector'
06-Dec-2024 13:17:57 Running post build plugin 'Docker Container Cleanup'
06-Dec-2024 13:17:57 Finalising the build...
06-Dec-2024 13:17:57 Stopping timer.
06-Dec-2024 13:17:57 Build JB-GDB633-JOB1-8 completed.
06-Dec-2024 13:17:57 Running on server: post build plugin 'NCover Results Collector'
06-Dec-2024 13:17:57 Running on server: post build plugin 'Build Hanging Detection Configuration'
06-Dec-2024 13:17:57 Running on server: post build plugin 'Clover Delta Calculator'
06-Dec-2024 13:17:57 Running on server: post build plugin 'Maven Dependencies Postprocessor'
06-Dec-2024 13:17:57 All post build plugins have finished
06-Dec-2024 13:17:57 Generating build results summary...
06-Dec-2024 13:17:57 Saving build results to disk...
06-Dec-2024 13:17:57 Logging substituted variables...
06-Dec-2024 13:17:57 Indexing build results...
06-Dec-2024 13:17:57 Finished building JB-GDB633-JOB1-8.