simple 06-Dec-2024 13:17:00 Build Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8) started building on agent Default Agent simple 06-Dec-2024 13:17:00 simple 06-Dec-2024 13:17:00 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1 simple 06-Dec-2024 13:17:00 Executing build Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8) simple 06-Dec-2024 13:17:00 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 06-Dec-2024 13:17:00 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1 simple 06-Dec-2024 13:17:00 Updating source code to revision: c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32 simple 06-Dec-2024 13:17:00 Fetching 'refs/heads/feature/JAL-4386_JAL-4435_reformat_node_labels' from 'http://source.jalview.org/git/jalview.git'. simple 06-Dec-2024 13:17:00 Checking out revision c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32. simple 06-Dec-2024 13:17:00 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164 simple 06-Dec-2024 13:17:00 b01e34e..c8ec18c feature/JAL-4386_JAL-4435_reformat_node_labels -> origin/feature/JAL-4386_JAL-4435_reformat_node_labels simple 06-Dec-2024 13:17:00 Already on 'feature/JAL-4386_JAL-4435_reformat_node_labels' simple 06-Dec-2024 13:17:00 Your branch is behind 'origin/feature/JAL-4386_JAL-4435_reformat_node_labels' by 1 commit, and can be fast-forwarded. simple 06-Dec-2024 13:17:00 (use "git pull" to update your local branch) simple 06-Dec-2024 13:17:00 HEAD is now at c8ec18c JAL-4435 Corrections on coloured line visualisation simple 06-Dec-2024 13:17:00 Updated source code to revision: c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32 simple 06-Dec-2024 13:17:00 Finished task 'Checkout Default Repository' with result: Success simple 06-Dec-2024 13:17:00 Running pre-build action: VCS Version Collector simple 06-Dec-2024 13:17:00 Running pre-build action: Artifactory Release Staging simple 06-Dec-2024 13:17:00 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 06-Dec-2024 13:17:00 Bamboo Artifactory Plugin version: 2.6.2 command 06-Dec-2024 13:17:00 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_repository_revision_number=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB633-JOB1-8\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GDB633-JOB1\nbamboo_shortPlanName=feature-JAL-4386_JAL-4435_reformat_node_labels\nbamboo_repository_46498136_git_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_repository_46498136_revision_number=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nbamboo_buildNumber=8\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB633-JOB1-8\nbamboo_repository_46498136_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels\nbamboo_shortPlanKey=GDB633\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nbamboo_buildTimeStamp=2024-12-06T13:17:00.623Z\nbamboo_repository_previous_revision_number=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_planRepository_previousRevision=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_repository_git_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_buildResultKey=JB-GDB633-JOB1-8\nbamboo_repository_branch_name=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_repository_46498136_previous_revision_number=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_planRepository_branchDisplayName=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_repository_46498136_branch_name=feature/JAL-4386_JAL-4435_reformat_node_labels\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498136_git_username=\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301871\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_repository_46498136_name=Jalview Git\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1\nbamboo_planKey=JB-GDB633\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=feature/JAL-4386_JAL-4435_reformat_node_labels\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 06-Dec-2024 13:17:00 444 build 06-Dec-2024 13:17:02 build 06-Dec-2024 13:17:02 > Configure project : build 06-Dec-2024 13:17:02 Using properties from file './utils/channels/default/channel_gradle.properties' build 06-Dec-2024 13:17:02 JALVIEW_VERSION is set to '2.11.4.0' build 06-Dec-2024 13:17:02 HEADLESS BUILD build 06-Dec-2024 13:17:02 J2S ENABLED build 06-Dec-2024 13:17:02 Using a LOCAL profile. build 06-Dec-2024 13:17:02 eclipseDir exists build 06-Dec-2024 13:17:03 build 06-Dec-2024 13:17:03 > Task :clean build 06-Dec-2024 13:17:03 > Task :cleanClover build 06-Dec-2024 13:17:03 > Task :cleanTest UP-TO-DATE build 06-Dec-2024 13:17:05 build 06-Dec-2024 13:17:05 > Task :cloverInstrJava build 06-Dec-2024 13:17:05 Clover: About to instrument 1102 files build 06-Dec-2024 13:17:05 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 06-Dec-2024 13:17:05 Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover.db'. build 06-Dec-2024 13:17:05 Processing files at 1.9 source level. error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? error 06-Dec-2024 13:17:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? build 06-Dec-2024 13:17:14 Clover all over. Instrumented 1102 files (111 packages). build 06-Dec-2024 13:17:17 build 06-Dec-2024 13:17:17 > Task :cloverInstrTests build 06-Dec-2024 13:17:17 Clover: About to instrument test files build 06-Dec-2024 13:17:17 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 06-Dec-2024 13:17:17 Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover.db'. build 06-Dec-2024 13:17:17 Processing files at 1.9 source level. build 06-Dec-2024 13:17:19 Clover all over. Instrumented 290 files (52 packages). build 06-Dec-2024 13:17:19 1591 test methods detected. build 06-Dec-2024 13:17:19 build 06-Dec-2024 13:17:19 > Task :cloverInstr build 06-Dec-2024 13:17:21 build 06-Dec-2024 13:17:21 > Task :compileCloverJava build 06-Dec-2024 13:17:21 Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons: build 06-Dec-2024 13:17:21 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 06-Dec-2024 13:17:21 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 06-Dec-2024 13:17:21 - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. build 06-Dec-2024 13:17:21 Setting target compatibility to 11 error 06-Dec-2024 13:17:25 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr/jalview/gui/TreePanel.java:798: error: cannot find symbol error 06-Dec-2024 13:17:25 __CLR4_4_11qwg1qwgm4crsv6t.R.inc(81816);colorMapPanel.setVisible(showStructureProviderColouredLines.isSelected()); error 06-Dec-2024 13:17:25 ^ error 06-Dec-2024 13:17:25 symbol: variable colorMapPanel error 06-Dec-2024 13:17:25 location: class TreePanel error 06-Dec-2024 13:17:25 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr/jalview/gui/TreePanel.java:805: error: cannot find symbol error 06-Dec-2024 13:17:25 __CLR4_4_11qwg1qwgm4crsv6t.R.inc(81819);colorMapPanel.setVisible(showStructureProviderColouredLines.isSelected()); error 06-Dec-2024 13:17:25 ^ error 06-Dec-2024 13:17:25 symbol: variable colorMapPanel error 06-Dec-2024 13:17:25 location: class TreePanel error 06-Dec-2024 13:17:25 /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/clover/clover-instr/jalview/gui/TreePanel.java:812: error: cannot find symbol error 06-Dec-2024 13:17:25 __CLR4_4_11qwg1qwgm4crsv6t.R.inc(81822);colorMapPanel.setVisible(showStructureProviderColouredLines.isSelected()); error 06-Dec-2024 13:17:25 ^ error 06-Dec-2024 13:17:25 symbol: variable colorMapPanel error 06-Dec-2024 13:17:25 location: class TreePanel error 06-Dec-2024 13:17:32 Note: Some input files use or override a deprecated API. error 06-Dec-2024 13:17:32 Note: Recompile with -Xlint:deprecation for details. error 06-Dec-2024 13:17:32 Note: Some input files use unchecked or unsafe operations. error 06-Dec-2024 13:17:32 Note: Recompile with -Xlint:unchecked for details. error 06-Dec-2024 13:17:32 3 errors build 06-Dec-2024 13:17:32 build 06-Dec-2024 13:17:32 > Task :compileCloverJava FAILED error 06-Dec-2024 13:17:32 error 06-Dec-2024 13:17:32 FAILURE: Build failed with an exception. error 06-Dec-2024 13:17:32 error 06-Dec-2024 13:17:32 * What went wrong: error 06-Dec-2024 13:17:32 Execution failed for task ':compileCloverJava'. error 06-Dec-2024 13:17:32 > Compilation failed; see the compiler error output for details. error 06-Dec-2024 13:17:32 error 06-Dec-2024 13:17:32 * Try: error 06-Dec-2024 13:17:32 > Run with --stacktrace option to get the stack trace. error 06-Dec-2024 13:17:32 > Run with --info or --debug option to get more log output. error 06-Dec-2024 13:17:32 > Run with --scan to get full insights. error 06-Dec-2024 13:17:32 error 06-Dec-2024 13:17:32 * Get more help at https://help.gradle.org error 06-Dec-2024 13:17:32 error 06-Dec-2024 13:17:32 BUILD FAILED in 31s build 06-Dec-2024 13:17:32 build 06-Dec-2024 13:17:32 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 06-Dec-2024 13:17:32 build 06-Dec-2024 13:17:32 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 06-Dec-2024 13:17:32 build 06-Dec-2024 13:17:32 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 06-Dec-2024 13:17:32 build 06-Dec-2024 13:17:32 Execution optimizations have been disabled for 1 invalid unit(s) of work during this build to ensure correctness. build 06-Dec-2024 13:17:32 Please consult deprecation warnings for more details. build 06-Dec-2024 13:17:32 6 actionable tasks: 5 executed, 1 up-to-date simple 06-Dec-2024 13:17:32 simple 06-Dec-2024 13:17:32 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 simple 06-Dec-2024 13:17:32 Finished task 'Run tests with openclover under gradle' with result: Failed simple 06-Dec-2024 13:17:32 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 06-Dec-2024 13:17:32 Bamboo Artifactory Plugin version: 2.6.2 command 06-Dec-2024 13:17:32 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests #8 (JB-GDB633-JOB1-8)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_repository_revision_number=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB633-JOB1-8\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GDB633-JOB1\nbamboo_shortPlanName=feature-JAL-4386_JAL-4435_reformat_node_labels\nbamboo_repository_46498136_git_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_repository_46498136_revision_number=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nbamboo_buildNumber=8\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB633-JOB1-8\nbamboo_repository_46498136_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels\nbamboo_shortPlanKey=GDB633\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nbamboo_buildTimeStamp=2024-12-06T13:17:00.623Z\nbamboo_repository_previous_revision_number=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_planRepository_previousRevision=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_repository_git_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_buildResultKey=JB-GDB633-JOB1-8\nbamboo_repository_branch_name=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - feature-JAL-4386_JAL-4435_reformat_node_labels - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=c8ec18cdaf58a232459fe4a2bc6fa2bb70678c32\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_repository_46498136_previous_revision_number=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_buildFailed=true\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=true\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=b01e34e4193f67114db140e6aa32eb1ef7e5b38f\nbamboo_planRepository_branchDisplayName=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=feature/JAL-4386_JAL-4435_reformat_node_labels\nbamboo_repository_46498136_branch_name=feature/JAL-4386_JAL-4435_reformat_node_labels\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_46498136_git_username=\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46301871\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_repository_46498136_name=Jalview Git\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1\nbamboo_planKey=JB-GDB633\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=feature/JAL-4386_JAL-4435_reformat_node_labels\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 06-Dec-2024 13:17:32 444 build 06-Dec-2024 13:17:39 build 06-Dec-2024 13:17:39 > Configure project : build 06-Dec-2024 13:17:39 Using properties from file './utils/channels/default/channel_gradle.properties' build 06-Dec-2024 13:17:39 JALVIEW_VERSION is set to '2.11.4.0' build 06-Dec-2024 13:17:39 HEADLESS BUILD build 06-Dec-2024 13:17:39 J2S ENABLED build 06-Dec-2024 13:17:39 Using a LOCAL profile. build 06-Dec-2024 13:17:40 eclipseDir exists build 06-Dec-2024 13:17:42 build 06-Dec-2024 13:17:42 > Task :cloverHtmlReport build 06-Dec-2024 13:17:42 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 06-Dec-2024 13:17:42 Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/reports/clover' build 06-Dec-2024 13:17:52 Done. Processed 115 packages in 10254ms (89ms per package). build 06-Dec-2024 13:17:55 build 06-Dec-2024 13:17:55 > Task :cloverXmlReport build 06-Dec-2024 13:17:55 OpenClover Version 4.4.1, built on October 11 2019 (build-1020) build 06-Dec-2024 13:17:55 Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/reports/clover/clover.xml' build 06-Dec-2024 13:17:55 build 06-Dec-2024 13:17:55 > Task :cloverReport build 06-Dec-2024 13:17:55 build 06-Dec-2024 13:17:55 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. build 06-Dec-2024 13:17:55 build 06-Dec-2024 13:17:55 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. build 06-Dec-2024 13:17:55 build 06-Dec-2024 13:17:55 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings build 06-Dec-2024 13:17:55 build 06-Dec-2024 13:17:55 BUILD SUCCESSFUL in 23s build 06-Dec-2024 13:17:55 2 actionable tasks: 2 executed simple 06-Dec-2024 13:17:56 Finished task 'Clover Report' with result: Success simple 06-Dec-2024 13:17:56 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' simple 06-Dec-2024 13:17:56 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1... simple 06-Dec-2024 13:17:56 Failing task since test cases were expected but none were found. simple 06-Dec-2024 13:17:56 Finished task 'TestNG Parser' with result: Failed simple 06-Dec-2024 13:17:56 Running post build plugin 'NCover Results Collector' simple 06-Dec-2024 13:17:56 Running post build plugin 'Artifact Copier' simple 06-Dec-2024 13:17:56 Publishing an artifact: Clover Report (System) simple 06-Dec-2024 13:17:57 Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 983.8 ms simple 06-Dec-2024 13:17:57 Publishing an artifact: TestNG report error 06-Dec-2024 13:17:57 Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB633-JOB1/build/reports/tests/test does not exist. simple 06-Dec-2024 13:17:57 The artifact hasn't been successfully published after 1.333 ms simple 06-Dec-2024 13:17:57 Running post build plugin 'Artifactory Release Management Staging' simple 06-Dec-2024 13:17:57 Running post build plugin 'Artifactory Build Info Copier' simple 06-Dec-2024 13:17:57 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 06-Dec-2024 13:17:57 Running post build plugin 'npm Cache Cleanup' simple 06-Dec-2024 13:17:57 Running post build plugin 'Clover Results Collector' simple 06-Dec-2024 13:17:57 Running post build plugin 'Docker Container Cleanup' simple 06-Dec-2024 13:17:57 Finalising the build... simple 06-Dec-2024 13:17:57 Stopping timer. simple 06-Dec-2024 13:17:57 Build JB-GDB633-JOB1-8 completed. simple 06-Dec-2024 13:17:57 Running on server: post build plugin 'NCover Results Collector' simple 06-Dec-2024 13:17:57 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 06-Dec-2024 13:17:57 Running on server: post build plugin 'Clover Delta Calculator' simple 06-Dec-2024 13:17:57 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 06-Dec-2024 13:17:57 All post build plugins have finished simple 06-Dec-2024 13:17:57 Generating build results summary... simple 06-Dec-2024 13:17:57 Saving build results to disk... simple 06-Dec-2024 13:17:57 Logging substituted variables... simple 06-Dec-2024 13:17:57 Indexing build results... simple 06-Dec-2024 13:17:57 Finished building JB-GDB633-JOB1-8.