1. Project Clover database Fri Dec 6 2024 13:47:14 GMT
  2. Package jalview.ws.dbsources

File PfamSeed.java

 

Coverage histogram

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29% of files have more coverage

Code metrics

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Classes

Class
Line #
Actions
PfamSeed 29 6 5
0.636363663.6%
 

Contributing tests

This file is covered by 7 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    /**
24    * flyweight class specifying retrieval of Seed alignments from PFAM
25    *
26    * @author JimP
27    *
28    */
 
29    public class PfamSeed extends Pfam
30    {
 
31  18 toggle public PfamSeed()
32    {
33  18 super();
34  18 alignmentType = SEED;
35    }
36   
37    /*
38    * (non-Javadoc)
39    *
40    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
41    */
 
42  16 toggle @Override
43    public String getDbName()
44    {
45  16 return "PFAM (Seed)";
46    }
47   
 
48  32 toggle @Override
49    public String getDbSource()
50    {
51  32 return jalview.datamodel.DBRefSource.PFAM; // archetype source
52    }
53   
 
54  0 toggle @Override
55    public String getTestQuery()
56    {
57  0 return "PF03760";
58    }
59   
 
60  0 toggle @Override
61    public int getTier()
62    {
63  0 return 0;
64    }
65    }