Class |
Line # |
Actions |
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PfamSeed | 29 | 6 | 5 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.ws.dbsources; | |
22 | ||
23 | /** | |
24 | * flyweight class specifying retrieval of Seed alignments from PFAM | |
25 | * | |
26 | * @author JimP | |
27 | * | |
28 | */ | |
29 | public class PfamSeed extends Pfam | |
30 | { | |
31 | 18 | public PfamSeed() |
32 | { | |
33 | 18 | super(); |
34 | 18 | alignmentType = SEED; |
35 | } | |
36 | ||
37 | /* | |
38 | * (non-Javadoc) | |
39 | * | |
40 | * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() | |
41 | */ | |
42 | 16 | @Override |
43 | public String getDbName() | |
44 | { | |
45 | 16 | return "PFAM (Seed)"; |
46 | } | |
47 | ||
48 | 32 | @Override |
49 | public String getDbSource() | |
50 | { | |
51 | 32 | return jalview.datamodel.DBRefSource.PFAM; // archetype source |
52 | } | |
53 | ||
54 | 0 | @Override |
55 | public String getTestQuery() | |
56 | { | |
57 | 0 | return "PF03760"; |
58 | } | |
59 | ||
60 | 0 | @Override |
61 | public int getTier() | |
62 | { | |
63 | 0 | return 0; |
64 | } | |
65 | } |