Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
PfamFull	27	7	6	0.5384615753.8%	Show methods

Class PfamFull

Class PfamFull	Line # 27	Total Statements 7	Complexity 6	TOTAL Coverage 0.5384615753.8%
PfamFull()   PfamFull()	2929	2.02	1.01	1.0 1.0100%
getDbName() : String   getDbName() : String	4040	1.01	1.01	1.0 1.0100%
getDbSource() : String   getDbSource() : String	4646	1.01	1.01	1.0 1.0100%
getTestQuery() : String   getTestQuery() : String	5252	1.01	1.01	0.0 0.00%
getDbVersion() : String   getDbVersion() : String	5858	1.01	1.01	0.0 0.00%
getTier() : int   getTier() : int	6464	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.53846157	jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest	1PASS
	0.53846157	jalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefsjalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefs	1PASS
	0.53846157	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS
	0.53846157	jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest	1PASS
	0.53846157	jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges	1PASS
	0.53846157	jalview.ws.seqfetcher.DbRefFetcherTest.testStandardProtDbsjalview.ws.seqfetcher.DbRefFetcherTest.testStandardProtDbs	1PASS
	0.23076923	jalview.ws.dbsources.PfamFullTest.testGetURLjalview.ws.dbsources.PfamFullTest.testGetURL	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.dbsources;
22
23		/**
24		* flyweight class specifying retrieval of Full family alignments from PFAM
25		*
26		*/
		53.8% Uncovered Elements: 6 (13) Complexity: 6 Complexity Density: 0.86
27		public class PfamFull extends Pfam
28		{
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
29	18	public PfamFull()...
30		{
31	18	super();
32	18	alignmentType = FULL;
33		}
34
35		/*
36		* (non-Javadoc)
37		*
38		* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
39		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
40	48	@Override...
41		public String getDbName()
42		{
43	48	return "PFAM (Full)";
44		}
45
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
46	32	@Override...
47		public String getDbSource()
48		{
49	32	return getDbName(); // so we have unique DbSource string.
50		}
51
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
52	0	@Override...
53		public String getTestQuery()
54		{
55	0	return "PF03760";
56		}
57
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	@Override...
59		public String getDbVersion()
60		{
61	0	return null;
62		}
63
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
64	0	@Override...
65		public int getTier()
66		{
67	0	return 0;
68		}
69		}