Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
MatcherTest	37	212	15	0.9821428798.2%	Show methods

Class MatcherTest

Class MatcherTest	Line # 37	Total Statements 212	Complexity 15	TOTAL Coverage 0.9821428798.2%
testConstructor() : void   testConstructor() : void	3939	49.049	5.05	0.9183673 0.918367391.8%
testMatches_float() : void   testMatches_float() : void	125125	24.024	1.01	1.0 1.0100%
testNumericMatch_nullOrInvalidValue() : void   testNumericMatch_nullOrInvalidValue() : void	181181	10.010	2.02	1.0 1.0100%
testMatches_pattern() : void   testMatches_pattern() : void	203203	39.039	1.01	1.0 1.0100%
testMatches_floatWithStringCondition() : void   testMatches_floatWithStringCondition() : void	278278	12.012	1.01	1.0 1.0100%
testToString() : void   testToString() : void	296296	9.09	1.01	1.0 1.0100%
testEquals() : void   testEquals() : void	314314	29.029	1.01	1.0 1.0100%
testHashCode() : void   testHashCode() : void	360360	8.08	1.01	1.0 1.0100%
testMatches_long() : void   testMatches_long() : void	376376	26.026	1.01	1.0 1.0100%
testMatches_floatValueIntegerCondition() : void   testMatches_floatValueIntegerCondition() : void	434434	6.06	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.20535715	jalview.util.matcher.MatcherTest.testConstructorjalview.util.matcher.MatcherTest.testConstructor	1PASS
	0.17857143	jalview.util.matcher.MatcherTest.testMatches_patternjalview.util.matcher.MatcherTest.testMatches_pattern	1PASS
	0.13392857	jalview.util.matcher.MatcherTest.testEqualsjalview.util.matcher.MatcherTest.testEquals	1PASS
	0.12053572	jalview.util.matcher.MatcherTest.testMatches_longjalview.util.matcher.MatcherTest.testMatches_long	1PASS
	0.11160714	jalview.util.matcher.MatcherTest.testMatches_floatjalview.util.matcher.MatcherTest.testMatches_float	1PASS
	0.058035713	jalview.util.matcher.MatcherTest.testMatches_floatWithStringConditionjalview.util.matcher.MatcherTest.testMatches_floatWithStringCondition	1PASS
	0.058035713	jalview.util.matcher.MatcherTest.testNumericMatch_nullOrInvalidValuejalview.util.matcher.MatcherTest.testNumericMatch_nullOrInvalidValue	1PASS
	0.04464286	jalview.util.matcher.MatcherTest.testToStringjalview.util.matcher.MatcherTest.testToString	1PASS
	0.04017857	jalview.util.matcher.MatcherTest.testHashCodejalview.util.matcher.MatcherTest.testHashCode	1PASS
	0.03125	jalview.util.matcher.MatcherTest.testMatches_floatValueIntegerConditionjalview.util.matcher.MatcherTest.testMatches_floatValueIntegerCondition	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.util.matcher;
22
23		import static org.testng.Assert.assertEquals;
24		import static org.testng.Assert.assertFalse;
25		import static org.testng.Assert.assertNotEquals;
26		import static org.testng.Assert.assertSame;
27		import static org.testng.Assert.assertTrue;
28		import static org.testng.Assert.fail;
29
30		import java.util.Locale;
31
32		import org.testng.annotations.Test;
33
34		import jalview.util.matcher.Matcher.PatternType;
35		import junit.extensions.PA;
36
		98.2% Uncovered Elements: 4 (224) Complexity: 15 Complexity Density: 0.07
37		public class MatcherTest
38		{
		91.8% Uncovered Elements: 4 (49) Complexity: 5 Complexity Density: 0.1 1PASS
39	1	@Test(groups = "Functional")...
40		public void testConstructor()
41		{
42	1	MatcherI m = new Matcher(Condition.Contains, "foo");
43	1	assertEquals(m.getCondition(), Condition.Contains);
44	1	assertEquals(m.getPattern(), "foo");
45	1	assertEquals(PA.getValue(m, "uppercasePattern"), "FOO");
46	1	assertEquals(PA.getValue(m, "floatValue"), 0f);
47	1	assertEquals(PA.getValue(m, "longValue"), 0L);
48	1	assertSame(PA.getValue(m, "patternType"), PatternType.String);
49
50	1	m = new Matcher(Condition.GT, -2.1f);
51	1	assertEquals(m.getCondition(), Condition.GT);
52	1	assertEquals(m.getPattern(), "-2.1");
53	1	assertEquals(PA.getValue(m, "floatValue"), -2.1f);
54	1	assertEquals(PA.getValue(m, "longValue"), 0L);
55	1	assertSame(PA.getValue(m, "patternType"), PatternType.Float);
56
57	1	m = new Matcher(Condition.NotContains, "-1.2f");
58	1	assertEquals(m.getCondition(), Condition.NotContains);
59	1	assertEquals(m.getPattern(), "-1.2f");
60	1	assertEquals(PA.getValue(m, "floatValue"), 0f);
61	1	assertEquals(PA.getValue(m, "longValue"), 0L);
62	1	assertSame(PA.getValue(m, "patternType"), PatternType.String);
63
64	1	m = new Matcher(Condition.GE, "-1.2f");
65	1	assertEquals(m.getCondition(), Condition.GE);
66	1	assertEquals(m.getPattern(), "-1.2");
67	1	assertEquals(PA.getValue(m, "floatValue"), -1.2f);
68	1	assertEquals(PA.getValue(m, "longValue"), 0L);
69	1	assertSame(PA.getValue(m, "patternType"), PatternType.Float);
70
71	1	m = new Matcher(Condition.GE, "113890813");
72	1	assertEquals(m.getCondition(), Condition.GE);
73	1	assertEquals(m.getPattern(), "113890813");
74	1	assertEquals(PA.getValue(m, "floatValue"), 0f);
75	1	assertEquals(PA.getValue(m, "longValue"), 113890813L);
76	1	assertSame(PA.getValue(m, "patternType"), PatternType.Integer);
77
78	1	m = new Matcher(Condition.GE, "-987f");
79	1	assertEquals(m.getCondition(), Condition.GE);
80	1	assertEquals(m.getPattern(), "-987.0");
81	1	assertEquals(PA.getValue(m, "floatValue"), -987f);
82	1	assertEquals(PA.getValue(m, "longValue"), 0L);
83	1	assertSame(PA.getValue(m, "patternType"), PatternType.Float);
84
85	1	try
86		{
87	1	new Matcher(null, 0f);
88	0	fail("Expected exception");
89		} catch (NullPointerException e)
90		{
91		// expected
92		}
93
94	1	try
95		{
96	1	new Matcher(Condition.LT, "123,456");
97	0	fail("Expected exception");
98		} catch (NumberFormatException e)
99		{
100		// expected - see Long.valueOf()
101		}
102
103	1	try
104		{
105	1	new Matcher(Condition.LT, "123_456");
106	0	fail("Expected exception");
107		} catch (NumberFormatException e)
108		{
109		// expected - see Long.valueOf()
110		}
111
112	1	try
113		{
114	1	new Matcher(Condition.LT, "123456L");
115	0	fail("Expected exception");
116		} catch (NumberFormatException e)
117		{
118		// expected - see Long.valueOf()
119		}
120		}
121
122		/**
123		* Tests for float comparison conditions
124		*/
		100% Uncovered Elements: 0 (24) Complexity: 1 Complexity Density: 0.04 1PASS
125	1	@Test(groups = "Functional")...
126		public void testMatches_float()
127		{
128		/*
129		* EQUALS test
130		*/
131	1	MatcherI m = new Matcher(Condition.EQ, 2f);
132	1	assertTrue(m.matches("2"));
133	1	assertTrue(m.matches("2.0"));
134	1	assertFalse(m.matches("2.01"));
135
136		/*
137		* NOT EQUALS test
138		*/
139	1	m = new Matcher(Condition.NE, 2f);
140	1	assertFalse(m.matches("2"));
141	1	assertFalse(m.matches("2.0"));
142	1	assertTrue(m.matches("2.01"));
143
144		/*
145		* >= test
146		*/
147	1	m = new Matcher(Condition.GE, "2f");
148	1	assertTrue(m.matches("2"));
149	1	assertTrue(m.matches("2.1"));
150	1	assertFalse(m.matches("1.9"));
151
152		/*
153		* > test
154		*/
155	1	m = new Matcher(Condition.GT, 2f);
156	1	assertFalse(m.matches("2"));
157	1	assertTrue(m.matches("2.1"));
158	1	assertFalse(m.matches("1.9"));
159
160		/*
161		* <= test
162		*/
163	1	m = new Matcher(Condition.LE, "2.0f");
164	1	assertTrue(m.matches("2"));
165	1	assertFalse(m.matches("2.1"));
166	1	assertTrue(m.matches("1.9"));
167
168		/*
169		* < test
170		*/
171	1	m = new Matcher(Condition.LT, 2f);
172	1	assertFalse(m.matches("2"));
173	1	assertFalse(m.matches("2.1"));
174	1	assertTrue(m.matches("1.9"));
175		}
176
177		/**
178		* Verifies that all numeric match conditions fail when applied to non-numeric
179		* or null values
180		*/
		100% Uncovered Elements: 0 (12) Complexity: 2 Complexity Density: 0.2 1PASS
181	1	@Test(groups = "Functional")...
182		public void testNumericMatch_nullOrInvalidValue()
183		{
184	1	for (Condition cond : Condition.values())
185		{
186	12	if (cond.isNumeric())
187		{
188	6	MatcherI m1 = new Matcher(cond, 2.1f);
189	6	MatcherI m2 = new Matcher(cond, 2345L);
190	6	assertFalse(m1.matches(null));
191	6	assertFalse(m1.matches(""));
192	6	assertFalse(m1.matches("two"));
193	6	assertFalse(m2.matches(null));
194	6	assertFalse(m2.matches(""));
195	6	assertFalse(m2.matches("two"));
196		}
197		}
198		}
199
200		/**
201		* Tests for string comparison conditions
202		*/
		100% Uncovered Elements: 0 (39) Complexity: 1 Complexity Density: 0.03 1PASS
203	1	@Test(groups = "Functional")...
204		public void testMatches_pattern()
205		{
206		/*
207		* Contains
208		*/
209	1	MatcherI m = new Matcher(Condition.Contains, "benign");
210	1	assertTrue(m.matches("benign"));
211	1	assertTrue(m.matches("MOSTLY BENIGN OBSERVED")); // not case-sensitive
212	1	assertFalse(m.matches("pathogenic"));
213	1	assertFalse(m.matches(null));
214
215		/*
216		* does not contain
217		*/
218	1	m = new Matcher(Condition.NotContains, "benign");
219	1	assertFalse(m.matches("benign"));
220	1	assertFalse(m.matches("MOSTLY BENIGN OBSERVED")); // not case-sensitive
221	1	assertTrue(m.matches("pathogenic"));
222	1	assertTrue(m.matches(null)); // null value passes this condition
223
224		/*
225		* matches
226		*/
227	1	m = new Matcher(Condition.Matches, "benign");
228	1	assertTrue(m.matches("benign"));
229	1	assertTrue(m.matches(" Benign ")); // trim before testing
230	1	assertFalse(m.matches("MOSTLY BENIGN"));
231	1	assertFalse(m.matches("pathogenic"));
232	1	assertFalse(m.matches(null));
233
234		/*
235		* does not match
236		*/
237	1	m = new Matcher(Condition.NotMatches, "benign");
238	1	assertFalse(m.matches("benign"));
239	1	assertFalse(m.matches(" Benign ")); // trimmed before testing
240	1	assertTrue(m.matches("MOSTLY BENIGN"));
241	1	assertTrue(m.matches("pathogenic"));
242	1	assertTrue(m.matches(null));
243
244		/*
245		* value is present (is not null)
246		*/
247	1	m = new Matcher(Condition.Present, null);
248	1	assertTrue(m.matches("benign"));
249	1	assertTrue(m.matches(""));
250	1	assertFalse(m.matches(null));
251
252		/*
253		* value is not present (is null)
254		*/
255	1	m = new Matcher(Condition.NotPresent, null);
256	1	assertFalse(m.matches("benign"));
257	1	assertFalse(m.matches(""));
258	1	assertTrue(m.matches(null));
259
260		/*
261		* a number with a string match condition will be treated as string
262		* (these cases shouldn't arise as the match() method is coded)
263		*/
264	1	Matcher m1 = new Matcher(Condition.Contains, "32");
265	1	assertFalse(m1.matchesFloat("-203f", 0f));
266	1	assertTrue(m1.matchesFloat("-4321.0f", 0f));
267	1	assertFalse(m1.matchesFloat("-203", 0f));
268	1	assertTrue(m1.matchesFloat("-4321", 0f));
269	1	assertFalse(m1.matchesLong("-203"));
270	1	assertTrue(m1.matchesLong("-4321"));
271	1	assertFalse(m1.matchesLong("-203f"));
272	1	assertTrue(m1.matchesLong("-4321.0f"));
273		}
274
275		/**
276		* If a float is passed with a string condition it gets converted to a string
277		*/
		100% Uncovered Elements: 0 (12) Complexity: 1 Complexity Density: 0.08 1PASS
278	1	@Test(groups = "Functional")...
279		public void testMatches_floatWithStringCondition()
280		{
281	1	MatcherI m = new Matcher(Condition.Contains, 1.2e-6f);
282	1	assertEquals(m.getPattern(), "1.2E-6");
283	1	assertEquals(PA.getValue(m, "uppercasePattern"), "1.2E-6");
284	1	assertEquals(PA.getValue(m, "floatValue"), 0f);
285	1	assertEquals(PA.getValue(m, "longValue"), 0L);
286	1	assertSame(PA.getValue(m, "patternType"), PatternType.String);
287	1	assertTrue(m.matches("1.2e-6"));
288
289	1	m = new Matcher(Condition.Contains, 0.0000001f);
290	1	assertEquals(m.getPattern(), "1.0E-7");
291	1	assertTrue(m.matches("1.0e-7"));
292	1	assertTrue(m.matches("1.0E-7"));
293	1	assertFalse(m.matches("0.0000001f"));
294		}
295
		100% Uncovered Elements: 0 (9) Complexity: 1 Complexity Density: 0.11 1PASS
296	1	@Test(groups = "Functional")...
297		public void testToString()
298		{
299	1	Locale.setDefault(Locale.ENGLISH);
300
301	1	MatcherI m = new Matcher(Condition.LT, 1.2e-6f);
302	1	assertEquals(m.toString(), "< 1.2E-6");
303
304	1	m = new Matcher(Condition.GE, "20200413");
305	1	assertEquals(m.toString(), ">= 20200413");
306
307	1	m = new Matcher(Condition.NotMatches, "ABC");
308	1	assertEquals(m.toString(), "Does not match 'ABC'");
309
310	1	m = new Matcher(Condition.Contains, -1.2f);
311	1	assertEquals(m.toString(), "Contains '-1.2'");
312		}
313
		100% Uncovered Elements: 0 (29) Complexity: 1 Complexity Density: 0.03 1PASS
314	1	@Test(groups = "Functional")...
315		public void testEquals()
316		{
317		/*
318		* string condition
319		*/
320	1	MatcherI m = new Matcher(Condition.NotMatches, "ABC");
321	1	assertFalse(m.equals(null));
322	1	assertFalse(m.equals("foo"));
323	1	assertTrue(m.equals(m));
324	1	assertTrue(m.equals(new Matcher(Condition.NotMatches, "ABC")));
325		// not case-sensitive:
326	1	assertTrue(m.equals(new Matcher(Condition.NotMatches, "abc")));
327	1	assertFalse(m.equals(new Matcher(Condition.Matches, "ABC")));
328	1	assertFalse(m.equals(new Matcher(Condition.NotMatches, "def")));
329
330		/*
331		* numeric conditions - float values
332		*/
333	1	m = new Matcher(Condition.LT, -1f);
334	1	assertFalse(m.equals(null));
335	1	assertFalse(m.equals("foo"));
336	1	assertTrue(m.equals(m));
337	1	assertTrue(m.equals(new Matcher(Condition.LT, -1f)));
338	1	assertTrue(m.equals(new Matcher(Condition.LT, "-1f")));
339	1	assertTrue(m.equals(new Matcher(Condition.LT, "-1.00f")));
340	1	assertFalse(m.equals(new Matcher(Condition.LE, -1f)));
341	1	assertFalse(m.equals(new Matcher(Condition.GE, -1f)));
342	1	assertFalse(m.equals(new Matcher(Condition.NE, -1f)));
343	1	assertFalse(m.equals(new Matcher(Condition.LT, 1f)));
344	1	assertFalse(m.equals(new Matcher(Condition.LT, -1.1f)));
345
346		/*
347		* numeric conditions - integer values
348		*/
349	1	m = new Matcher(Condition.LT, -123456);
350	1	assertFalse(m.equals(null));
351	1	assertFalse(m.equals("foo"));
352	1	assertTrue(m.equals(m));
353	1	assertTrue(m.equals(new Matcher(Condition.LT, -123456)));
354	1	assertFalse(m.equals(new Matcher(Condition.LT, +123456)));
355	1	assertTrue(m.equals(new Matcher(Condition.LT, "-123456")));
356	1	assertFalse(m.equals(new Matcher(Condition.LT, -123456f)));
357	1	assertFalse(m.equals(new Matcher(Condition.LT, "-123456f")));
358		}
359
		100% Uncovered Elements: 0 (8) Complexity: 1 Complexity Density: 0.12 1PASS
360	1	@Test(groups = "Functional")...
361		public void testHashCode()
362		{
363	1	MatcherI m1 = new Matcher(Condition.NotMatches, "ABC");
364	1	MatcherI m2 = new Matcher(Condition.NotMatches, "ABC");
365	1	MatcherI m3 = new Matcher(Condition.NotMatches, "AB");
366	1	MatcherI m4 = new Matcher(Condition.Matches, "ABC");
367	1	assertEquals(m1.hashCode(), m2.hashCode());
368	1	assertNotEquals(m1.hashCode(), m3.hashCode());
369	1	assertNotEquals(m1.hashCode(), m4.hashCode());
370	1	assertNotEquals(m3.hashCode(), m4.hashCode());
371		}
372
373		/**
374		* Tests for integer comparison conditions
375		*/
		100% Uncovered Elements: 0 (26) Complexity: 1 Complexity Density: 0.04 1PASS
376	1	@Test(groups = "Functional")...
377		public void testMatches_long()
378		{
379		/*
380		* EQUALS test
381		*/
382	1	MatcherI m = new Matcher(Condition.EQ, 2);
383	1	assertTrue(m.matches("2"));
384	1	assertTrue(m.matches("+2"));
385	1	assertFalse(m.matches("3"));
386		// a float value may be passed to an integer matcher
387	1	assertTrue(m.matches("2.0"));
388	1	assertTrue(m.matches("2.000000f"));
389	1	assertFalse(m.matches("2.01"));
390
391		/*
392		* NOT EQUALS test
393		*/
394	1	m = new Matcher(Condition.NE, 123);
395	1	assertFalse(m.matches("123"));
396	1	assertFalse(m.matches("123.0"));
397	1	assertTrue(m.matches("-123"));
398
399		/*
400		* >= test
401		*/
402	1	m = new Matcher(Condition.GE, "113890813");
403	1	assertTrue(m.matches("113890813"));
404	1	assertTrue(m.matches("113890814"));
405	1	assertFalse(m.matches("-113890813"));
406
407		/*
408		* > test
409		*/
410	1	m = new Matcher(Condition.GT, 113890813);
411	1	assertFalse(m.matches("113890813"));
412	1	assertTrue(m.matches("113890814"));
413
414		/*
415		* <= test
416		*/
417	1	m = new Matcher(Condition.LE, "113890813");
418	1	assertTrue(m.matches("113890813"));
419	1	assertFalse(m.matches("113890814"));
420	1	assertTrue(m.matches("113890812"));
421
422		/*
423		* < test
424		*/
425	1	m = new Matcher(Condition.LT, 113890813);
426	1	assertFalse(m.matches("113890813"));
427	1	assertFalse(m.matches("113890814"));
428	1	assertTrue(m.matches("113890812"));
429		}
430
431		/**
432		* Tests comparing a float value with an integer condition
433		*/
		100% Uncovered Elements: 0 (6) Complexity: 1 Complexity Density: 0.17 1PASS
434	1	@Test(groups = "Functional")...
435		public void testMatches_floatValueIntegerCondition()
436		{
437	1	MatcherI m = new Matcher(Condition.GT, 1234);
438	1	assertEquals(PA.getValue(m, "longValue"), 1234L);
439	1	assertSame(PA.getValue(m, "patternType"), PatternType.Integer);
440	1	assertTrue(m.matches("1235"));
441	1	assertTrue(m.matches("9867.345"));
442	1	assertTrue(m.matches("9867.345f"));
443		}
444		}