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Coverage Report

  1. Project Clover database Mon Sep 2 2024 17:57:51 BST
  2. Package jalview.jbgui

File GTreePanel.java

 

Coverage histogram

../../img/srcFileCovDistChart6.png
37% of files have more coverage

Code metrics

0
71
30
1
312
249
31
0.44
2.37
30
1.03

Classes

Class Line # Actions
GTreePanel 41 71 31
0.584158458.4%
 

Contributing tests

This file is covered by 8 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.jbgui;
22   
23    import java.awt.BorderLayout;
24    import java.awt.Color;
25    import java.awt.event.ActionEvent;
26    import java.awt.event.ActionListener;
27   
28    import javax.swing.JCheckBoxMenuItem;
29    import javax.swing.JInternalFrame;
30    import javax.swing.JMenu;
31    import javax.swing.JMenuBar;
32    import javax.swing.JMenuItem;
33    import javax.swing.JScrollPane;
34    import javax.swing.event.MenuEvent;
35    import javax.swing.event.MenuListener;
36   
37    import jalview.util.ImageMaker.TYPE;
38    import jalview.util.MessageManager;
39   
40    @SuppressWarnings("serial")
 
41    public class GTreePanel extends JInternalFrame
42    {
43    BorderLayout borderLayout1 = new BorderLayout();
44   
45    public JScrollPane scrollPane = new JScrollPane();
46   
47    JMenuBar jMenuBar1 = new JMenuBar();
48   
49    JMenu fileMenu = new JMenu();
50   
51    JMenuItem saveAsNewick = new JMenuItem();
52   
53    JMenuItem printMenu = new JMenuItem();
54   
55    protected JMenu viewMenu = new JMenu();
56   
57    public JMenuItem font = new JMenuItem();
58   
59    public JMenuItem sortAssocViews = new JMenuItem();
60   
61    public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
62   
63    public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
64   
65    public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
66   
67    public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
68   
69    JMenuItem pngTree = new JMenuItem();
70   
71    JMenuItem epsTree = new JMenuItem();
72   
73    JMenu saveAsMenu = new JMenu();
74   
75    JMenuItem textbox = new JMenuItem();
76   
77    public JMenuItem originalSeqData = new JMenuItem();
78   
79    protected JMenu associateLeavesMenu = new JMenu();
80   
 
81  14 toggle public GTreePanel()
82    {
83  14 try
84    {
85  14 jbInit();
86  14 this.setJMenuBar(jMenuBar1);
87    } catch (Exception e)
88    {
89  0 e.printStackTrace();
90    }
91    }
92   
 
93  14 toggle private void jbInit() throws Exception
94    {
95  14 setFrameIcon(null);
96  14 setName("jalview-tree");
97  14 this.getContentPane().setLayout(borderLayout1);
98  14 this.setBackground(Color.white);
99  14 this.setFont(new java.awt.Font("Verdana", 0, 12));
100  14 scrollPane.setOpaque(false);
101  14 fileMenu.setText(MessageManager.getString("action.file"));
102  14 saveAsNewick.setText(MessageManager.getString("label.newick_format"));
103  14 saveAsNewick.addActionListener(new ActionListener()
104    {
 
105  0 toggle @Override
106    public void actionPerformed(ActionEvent e)
107    {
108  0 saveAsNewick_actionPerformed(e);
109    }
110    });
111  14 printMenu.setText(MessageManager.getString("action.print"));
112  14 printMenu.addActionListener(new java.awt.event.ActionListener()
113    {
 
114  0 toggle @Override
115    public void actionPerformed(ActionEvent e)
116    {
117  0 printMenu_actionPerformed(e);
118    }
119    });
120  14 viewMenu.setText(MessageManager.getString("action.view"));
121  14 viewMenu.addMenuListener(new MenuListener()
122    {
 
123  0 toggle @Override
124    public void menuSelected(MenuEvent e)
125    {
126  0 viewMenu_menuSelected();
127    }
128   
 
129  0 toggle @Override
130    public void menuDeselected(MenuEvent e)
131    {
132    }
133   
 
134  0 toggle @Override
135    public void menuCanceled(MenuEvent e)
136    {
137    }
138    });
139  14 sortAssocViews.setText(
140    MessageManager.getString("label.sort_alignment_by_tree"));
141  14 sortAssocViews.addActionListener(new java.awt.event.ActionListener()
142    {
 
143  0 toggle @Override
144    public void actionPerformed(ActionEvent e)
145    {
146  0 sortByTree_actionPerformed();
147    }
148    });
149  14 font.setText(MessageManager.getString("action.font"));
150  14 font.addActionListener(new java.awt.event.ActionListener()
151    {
 
152  0 toggle @Override
153    public void actionPerformed(ActionEvent e)
154    {
155  0 font_actionPerformed(e);
156    }
157    });
158  14 bootstrapMenu.setText(
159    MessageManager.getString("label.show_bootstrap_values"));
160  14 bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
161    {
 
162  0 toggle @Override
163    public void actionPerformed(ActionEvent e)
164    {
165  0 bootstrapMenu_actionPerformed(e);
166    }
167    });
168  14 distanceMenu.setText(MessageManager.getString("label.show_distances"));
169  14 distanceMenu.addActionListener(new java.awt.event.ActionListener()
170    {
 
171  0 toggle @Override
172    public void actionPerformed(ActionEvent e)
173    {
174  0 distanceMenu_actionPerformed(e);
175    }
176    });
177  14 fitToWindow.setSelected(true);
178  14 fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
179  14 fitToWindow.addActionListener(new java.awt.event.ActionListener()
180    {
 
181  0 toggle @Override
182    public void actionPerformed(ActionEvent e)
183    {
184  0 fitToWindow_actionPerformed(e);
185    }
186    });
187  14 epsTree.setText("EPS");
188  14 epsTree.addActionListener(new java.awt.event.ActionListener()
189    {
 
190  0 toggle @Override
191    public void actionPerformed(ActionEvent e)
192    {
193  0 writeTreeImage(TYPE.EPS);
194    }
195    });
196  14 pngTree.setText("PNG");
197  14 pngTree.addActionListener(new java.awt.event.ActionListener()
198    {
 
199  0 toggle @Override
200    public void actionPerformed(ActionEvent e)
201    {
202  0 writeTreeImage(TYPE.PNG);
203    }
204    });
205  14 saveAsMenu.setText(MessageManager.getString("action.save_as"));
206  14 placeholdersMenu.setToolTipText(MessageManager.getString(
207    "label.marks_leaves_tree_not_associated_with_sequence"));
208  14 placeholdersMenu.setText(
209    MessageManager.getString("label.mark_unlinked_leaves"));
210  14 placeholdersMenu.addActionListener(new ActionListener()
211    {
 
212  0 toggle @Override
213    public void actionPerformed(ActionEvent e)
214    {
215  0 placeholdersMenu_actionPerformed(e);
216    }
217    });
218  14 textbox.setText(MessageManager.getString("label.out_to_textbox"));
219  14 textbox.addActionListener(new ActionListener()
220    {
 
221  0 toggle @Override
222    public void actionPerformed(ActionEvent e)
223    {
224  0 textbox_actionPerformed(e);
225    }
226    });
227  14 originalSeqData.setText(MessageManager.getString("label.input_data"));
228  14 originalSeqData.addActionListener(new ActionListener()
229    {
 
230  0 toggle @Override
231    public void actionPerformed(ActionEvent e)
232    {
233  0 originalSeqData_actionPerformed(e);
234    }
235    });
236  14 associateLeavesMenu.setText(
237    MessageManager.getString("label.associate_leaves_with"));
238  14 this.getContentPane().add(scrollPane, BorderLayout.CENTER);
239  14 jMenuBar1.add(fileMenu);
240  14 jMenuBar1.add(viewMenu);
241  14 fileMenu.add(saveAsMenu);
242  14 fileMenu.add(textbox);
243  14 fileMenu.add(printMenu);
244  14 fileMenu.add(originalSeqData);
245  14 viewMenu.add(fitToWindow);
246  14 viewMenu.add(font);
247  14 viewMenu.add(distanceMenu);
248  14 viewMenu.add(bootstrapMenu);
249  14 viewMenu.add(placeholdersMenu);
250  14 viewMenu.add(sortAssocViews);
251  14 viewMenu.add(associateLeavesMenu);
252  14 saveAsMenu.add(saveAsNewick);
253  14 saveAsMenu.add(epsTree);
254  14 saveAsMenu.add(pngTree);
255    }
256   
 
257  0 toggle public void printMenu_actionPerformed(ActionEvent e)
258    {
259    }
260   
 
261  0 toggle public void font_actionPerformed(ActionEvent e)
262    {
263    }
264   
 
265  0 toggle public void distanceMenu_actionPerformed(ActionEvent e)
266    {
267    }
268   
 
269  0 toggle public void bootstrapMenu_actionPerformed(ActionEvent e)
270    {
271    }
272   
 
273  0 toggle public void fitToWindow_actionPerformed(ActionEvent e)
274    {
275    }
276   
 
277  0 toggle public void writeTreeImage(TYPE imageType)
278    {
279    }
280   
 
281  0 toggle public void saveAsNewick_actionPerformed(ActionEvent e)
282    {
283    }
284   
 
285  0 toggle public void placeholdersMenu_actionPerformed(ActionEvent e)
286    {
287    }
288   
 
289  0 toggle public void textbox_actionPerformed(ActionEvent e)
290    {
291    }
292   
 
293  0 toggle public void fullid_actionPerformed(ActionEvent e)
294    {
295   
296    }
297   
 
298  0 toggle public void originalSeqData_actionPerformed(ActionEvent e)
299    {
300   
301    }
302   
 
303  0 toggle public void viewMenu_menuSelected()
304    {
305    }
306   
 
307  0 toggle public void sortByTree_actionPerformed()
308    {
309   
310    }
311   
312    }
  • Report generated by OpenClover v 4.4.1 on Mon Sep 2 2024 18:05:00 BST using coverage data from Mon Sep 2 2024 18:04:45 BST.
  • OpenClover is free and open-source software.