Build: #5 failed Manual run by Renia Correya
Build result summary
Details
- Completed
- Duration
- 9 minutes
- Labels
- None
- Agent
- Default Agent
- Revision
-
7af2c16e2466ea2665c29b5feba6341c1e255291
7af2c16e2466ea2665c29b5feba6341c1e255291 - Total tests
- 1696
- 27 New failures
- 0 Existing failures
- 0 Fixed
Responsible
No one has taken responsibility for this failure
Tests
Status | Test | View job | Duration | |
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CommandsTest
structureImageAnnotationsOutputTest(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 524)
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524] Stacktrace: java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest
structureImageAnnotationsOutputTest(--gui --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --showssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 660)
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660] Stacktrace: java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest
structureImageAnnotationsOutputTest(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --showssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 660)
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660] Stacktrace: java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest
structureImageAnnotationsOutputTest(--gui --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 524)
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524] Stacktrace: java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest2
structureOpeningArgsTest(--gui --nonews --nosplash --debug --append=examples/uniref50.fa --colour=gecos-flower --structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif --paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --props=test/jalview/bin/commandsTest2.jvprops2 , 15, 4, 1)
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of visible annotations expected [4] but found [5] Stacktrace: java.lang.AssertionError: Wrong number of visible annotations expected [4] but found [5] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest2
structureOpeningArgsTest(--gui --nonews --nosplash --debug --nowebservicediscovery --props=test/jalview/bin/commandsTest.jvprops --argfile=test/jalview/bin/commandsTest2.argfile1 , 16, 19, 3)
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Clover and Tests | 3 secs | |
Classname: java.lang.AssertionError Message: Wrong number of visible annotations expected [19] but found [20] Stacktrace: java.lang.AssertionError: Wrong number of visible annotations expected [19] but found [20] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest2
structureOpeningArgsTest(--gui --nonews --nosplash --debug --nowebservicediscovery --props=test/jalview/bin/commandsTest.jvprops --open=./examples/test_fab41.result/sample.a2m --allstructures --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --noallstructures --structureviewer=none --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4.pdb --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2.pdb, 16, 10, 2)
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Clover and Tests | 2 secs | |
Classname: java.lang.AssertionError Message: Wrong number of visible annotations expected [10] but found [11] Stacktrace: java.lang.AssertionError: Wrong number of visible annotations expected [10] but found [11] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest2
structureOpeningArgsTest(--gui --nonews --nosplash --debug --append=examples/uniref50.fa --colour=gecos-flower --structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif --paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --props=test/jalview/bin/commandsTest2.jvprops1 , 15, 7, 1)
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Clover and Tests | 2 secs | |
Classname: java.lang.AssertionError Message: Wrong number of visible annotations expected [7] but found [8] Stacktrace: java.lang.AssertionError: Wrong number of visible annotations expected [7] but found [8] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest2
structureOpeningArgsTest(--gui --nonews --nosplash --debug --append=examples/uniref50.fa --colour=gecos-flower --structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif --paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --noshowssannotations --props=test/jalview/bin/commandsTest2.jvprops1 , 15, 4, 1)
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of visible annotations expected [4] but found [5] Stacktrace: java.lang.AssertionError: Wrong number of visible annotations expected [4] but found [5] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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CommandsTest2
structureOpeningArgsTest(--gui --nonews --nosplash --debug --nowebservicediscovery --props=test/jalview/bin/commandsTest.jvprops --open=./examples/test_fab41.result/sample.a2m --allstructures --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureviewer=none --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4.pdb --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2.pdb, 16, 10, 0)
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of visible annotations expected [10] but found [11] Stacktrace: java.lang.AssertionError: Wrong number of visible annotations expected [10] but found [11] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) (44 more lines...) |
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AnnotationChooserTest
testDeselectType_showForAll
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: null Stacktrace: java.lang.AssertionError: at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49) (44 more lines...) |
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AnnotationChooserTest
testGetAnnotationTypes
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Not six annotation types expected:<7> but was:<8> Stacktrace: java.lang.AssertionError: Not six annotation types expected:<7> but was:<8> at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.failNotEquals(AssertJUnit.java:364) at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:80) at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:245) (44 more lines...) |
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AnnotationChooserTest
testDeselectType_showForSelected
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: null Stacktrace: java.lang.AssertionError: at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49) (44 more lines...) |
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AnnotationChooserTest
testSelectType_hideForSelected
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: null Stacktrace: java.lang.AssertionError: at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49) (44 more lines...) |
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AnnotationChooserTest
testSelectType_hideForAll
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: null Stacktrace: java.lang.AssertionError: at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49) (44 more lines...) |
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AnnotationChooserTest
testResetOriginalState
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: null Stacktrace: java.lang.AssertionError: at org.testng.AssertJUnit.fail(AssertJUnit.java:59) at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41) at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49) (44 more lines...) |
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AnnotationLabelsTest2
testIdWidthChanges(./test/files/annotation_label_width/sample.a2m, true, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130)
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: idWidth (154) is not narrower than70 expected [true] but found [false] Stacktrace: java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertTrue(Assert.java:42) at jalview.gui.AnnotationLabelsTest2.__CLR4_4_140rce13nnz(AnnotationLabelsTest2.java:113) (43 more lines...) |
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AnnotationLabelsTest2
testIdWidthChanges(./test/files/annotation_label_width/sample.a2m, false, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130)
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Clover and Tests | 3 secs | |
Classname: java.lang.AssertionError Message: idWidth (154) is not narrower than70 expected [true] but found [false] Stacktrace: java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertTrue(Assert.java:42) at jalview.gui.AnnotationLabelsTest2.__CLR4_4_140rce13nnz(AnnotationLabelsTest2.java:113) (43 more lines...) |
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AnnotationLabelsTest2
testIdWidthNoChanges(./test/files/annotation_label_width/sample.a2m, false, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130)
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: idWidth (154) is not narrower than70 expected [true] but found [false] Stacktrace: java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertTrue(Assert.java:42) at jalview.gui.AnnotationLabelsTest2.__CLR4_4_1roan143nos(AnnotationLabelsTest2.java:183) (43 more lines...) |
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AnnotationLabelsTest2
testIdWidthNoChanges(./test/files/annotation_label_width/sample.a2m, true, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130)
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: idWidth (154) is not narrower than70 expected [true] but found [false] Stacktrace: java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertTrue(Assert.java:42) at jalview.gui.AnnotationLabelsTest2.__CLR4_4_1roan143nos(AnnotationLabelsTest2.java:183) (43 more lines...) |
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AnnotationRowFilterTest
testGetAnnotationItems
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: expected [[Conservation, Quality, Consensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]] but found [[Conservation, Quality, Consensus, SecondaryStructureConsensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]] Stacktrace: java.lang.AssertionError: expected [[Conservation, Quality, Consensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]] but found [[Conservation, Quality, Consensus, SecondaryStructureConsensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:178) (45 more lines...) |
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StructureChooserTest
openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, JMOL, 15, 7, 1, )
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of viewed annotations expected:<7> but was:<8> Stacktrace: java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8> at org.junit.Assert.fail(Assert.java:88) at org.junit.Assert.failNotEquals(Assert.java:834) at org.junit.Assert.assertEquals(Assert.java:645) at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340) (43 more lines...) |
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StructureChooserTest
openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, false, false, , 15, 4, 0, )
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of viewed annotations expected:<4> but was:<5> Stacktrace: java.lang.AssertionError: Wrong number of viewed annotations expected:<4> but was:<5> at org.junit.Assert.fail(Assert.java:88) at org.junit.Assert.failNotEquals(Assert.java:834) at org.junit.Assert.assertEquals(Assert.java:645) at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340) (43 more lines...) |
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StructureChooserTest
openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, Default, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, , 15, 7, 0, )
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of viewed annotations expected:<7> but was:<8> Stacktrace: java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8> at org.junit.Assert.fail(Assert.java:88) at org.junit.Assert.failNotEquals(Assert.java:834) at org.junit.Assert.assertEquals(Assert.java:645) at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340) (43 more lines...) |
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StructureChooserTest
openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, Default, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, JMOL, 15, 7, 1, )
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of viewed annotations expected:<7> but was:<8> Stacktrace: java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8> at org.junit.Assert.fail(Assert.java:88) at org.junit.Assert.failNotEquals(Assert.java:834) at org.junit.Assert.assertEquals(Assert.java:645) at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340) (43 more lines...) |
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StructureChooserTest
openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, false, false, JMOL, 15, 4, 1, )
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Clover and Tests | 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of viewed annotations expected:<4> but was:<5> Stacktrace: java.lang.AssertionError: Wrong number of viewed annotations expected:<4> but was:<5> at org.junit.Assert.fail(Assert.java:88) at org.junit.Assert.failNotEquals(Assert.java:834) at org.junit.Assert.assertEquals(Assert.java:645) at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340) (43 more lines...) |
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StructureChooserTest
openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, , 15, 7, 0, )
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Clover and Tests | < 1 sec | |
Classname: java.lang.AssertionError Message: Wrong number of viewed annotations expected:<7> but was:<8> Stacktrace: java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8> at org.junit.Assert.fail(Assert.java:88) at org.junit.Assert.failNotEquals(Assert.java:834) at org.junit.Assert.assertEquals(Assert.java:645) at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340) (43 more lines...) |