Build: #5 failed
Job: Clover and Tests failed
Structure image annotations output test(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/ alpha fold/ a f- p00221- f1-model v4.pdb --seqid= f e r1 s p i o l --structureviewer=jmol --paematrix examples/ alpha fold/ a f- p00221- f1-predicted aligned error v4.json --image=test/jalview/bin/argparser/testfiles/test annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test annotations.png, 524): Test case result
The below summarizes the result of the test "Structure image annotations output test(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/ alpha fold/ a f- p00221- f1-model v4.pdb --seqid= f e r1 s p i o l --structureviewer=jmol --paematrix examples/ alpha fold/ a f- p00221- f1-predicted aligned error v4.json --image=test/jalview/bin/argparser/testfiles/test annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test annotations.png, 524)" in build 5 of Jalview Builds - Gradle Develop Build - feature-JAL-4392_consensus_secondary_structure - Clover and Tests.
- Description
- Structure image annotations output test(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/ alpha fold/ a f- p00221- f1-model v4.pdb --seqid= f e r1 s p i o l --structureviewer=jmol --paematrix examples/ alpha fold/ a f- p00221- f1-predicted aligned error v4.json --image=test/jalview/bin/argparser/testfiles/test annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test annotations.png, 524)
- Test class
- Gradle suite > Gradle test > jalview.bin.CommandsTest
- Method
- structureImageAnnotationsOutputTest(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 524)
- Duration
- 1 sec
- Status
- Failed (New Failure)
Error Log
Classname: java.lang.AssertionError Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524] Stacktrace: java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524] at org.testng.Assert.fail(Assert.java:94) at org.testng.Assert.failNotEquals(Assert.java:496) at org.testng.Assert.assertEquals(Assert.java:125) at org.testng.Assert.assertEquals(Assert.java:372) at jalview.bin.CommandsTest.__CLR4_4_1seuffr44mc(CommandsTest.java:876) at jalview.bin.CommandsTest.structureImageAnnotationsOutputTest(CommandsTest.java:870) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:141) at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:90) at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33) at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94) at com.sun.proxy.$Proxy2.stop(Unknown Source) at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193) at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100) at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60) at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:133) at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71) at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69) at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)