Build #5

Build: #5 failed

Job: Clover and Tests failed

Stages & jobs

  1. Default Stage

Job result summary

Completed
Duration
9 minutes
Agent
Default Agent
Revision
7af2c16e2466ea2665c29b5feba6341c1e255291 7af2c16e2466ea2665c29b5feba6341c1e255291
Total tests
1696

Tests

  • 1,696 tests in total
  • 27 tests failed
  • 27 failures are new
  • 5 minutes taken in total.
New test failures 27
Status Test Duration
Collapse Failed CommandsTest structureImageAnnotationsOutputTest(--gui --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 524) History
< 1 sec 
Classname: java.lang.AssertionError
Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524]
Stacktrace:
java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest structureImageAnnotationsOutputTest(--gui --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --showssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 660) History
< 1 sec 
Classname: java.lang.AssertionError
Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660]
Stacktrace:
java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest structureImageAnnotationsOutputTest(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --noshowssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 524) History
1 sec 
Classname: java.lang.AssertionError
Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524]
Stacktrace:
java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [597] but found [524]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest structureImageAnnotationsOutputTest(--noquit --headless --nonews --nosplash --open=./examples/uniref50.fa --structure=examples/AlphaFold/AF-P00221-F1-model_v4.pdb --seqid=FER1_SPIOL --structureviewer=jmol --paematrix examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --image=test/jalview/bin/argparser/testfiles/test_annotations.png --tempfac=plddt --overwrite --showssannotations --showannotations, test/jalview/bin/argparser/testfiles/test_annotations.png, 660) History
1 sec 
Classname: java.lang.AssertionError
Message: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660]
Stacktrace:
java.lang.AssertionError: Output image 'test/jalview/bin/argparser/testfiles/test_annotations.png' is not in the expected height range, possibly because of the wrong number of annotations expected [733] but found [660]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest2 structureOpeningArgsTest(--gui --nonews --nosplash --debug --append=examples/uniref50.fa --colour=gecos-flower --structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif --paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --noshowssannotations --props=test/jalview/bin/commandsTest2.jvprops1 , 15, 4, 1) History
1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of visible annotations expected [4] but found [5]
Stacktrace:
java.lang.AssertionError: Wrong number of visible annotations expected [4] but found [5]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest2 structureOpeningArgsTest(--gui --nonews --nosplash --debug --append=examples/uniref50.fa --colour=gecos-flower --structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif --paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --props=test/jalview/bin/commandsTest2.jvprops1 , 15, 7, 1) History
2 secs 
Classname: java.lang.AssertionError
Message: Wrong number of visible annotations expected [7] but found [8]
Stacktrace:
java.lang.AssertionError: Wrong number of visible annotations expected [7] but found [8]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest2 structureOpeningArgsTest(--gui --nonews --nosplash --debug --append=examples/uniref50.fa --colour=gecos-flower --structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif --paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json --props=test/jalview/bin/commandsTest2.jvprops2 , 15, 4, 1) History
1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of visible annotations expected [4] but found [5]
Stacktrace:
java.lang.AssertionError: Wrong number of visible annotations expected [4] but found [5]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest2 structureOpeningArgsTest(--gui --nonews --nosplash --debug --nowebservicediscovery --props=test/jalview/bin/commandsTest.jvprops --argfile=test/jalview/bin/commandsTest2.argfile1 , 16, 19, 3) History
3 secs 
Classname: java.lang.AssertionError
Message: Wrong number of visible annotations expected [19] but found [20]
Stacktrace:
java.lang.AssertionError: Wrong number of visible annotations expected [19] but found [20]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest2 structureOpeningArgsTest(--gui --nonews --nosplash --debug --nowebservicediscovery --props=test/jalview/bin/commandsTest.jvprops --open=./examples/test_fab41.result/sample.a2m --allstructures --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --noallstructures --structureviewer=none --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4.pdb --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2.pdb, 16, 10, 2) History
2 secs 
Classname: java.lang.AssertionError
Message: Wrong number of visible annotations expected [10] but found [11]
Stacktrace:
java.lang.AssertionError: Wrong number of visible annotations expected [10] but found [11]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed CommandsTest2 structureOpeningArgsTest(--gui --nonews --nosplash --debug --nowebservicediscovery --props=test/jalview/bin/commandsTest.jvprops --open=./examples/test_fab41.result/sample.a2m --allstructures --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb --structureviewer=none --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4.pdb --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2.pdb, 16, 10, 0) History
1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of visible annotations expected [10] but found [11]
Stacktrace:
java.lang.AssertionError: Wrong number of visible annotations expected [10] but found [11]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:372)
(44 more lines...)
Collapse Failed AnnotationChooserTest testDeselectType_showForAll History
< 1 sec 
Classname: java.lang.AssertionError
Message: null
Stacktrace:
java.lang.AssertionError: 
	at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
	at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49)
(44 more lines...)
Collapse Failed AnnotationChooserTest testDeselectType_showForSelected History
< 1 sec 
Classname: java.lang.AssertionError
Message: null
Stacktrace:
java.lang.AssertionError: 
	at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
	at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49)
(44 more lines...)
Collapse Failed AnnotationChooserTest testGetAnnotationTypes History
< 1 sec 
Classname: java.lang.AssertionError
Message: Not six annotation types expected:<7> but was:<8>
Stacktrace:
java.lang.AssertionError: Not six annotation types expected:<7> but was:<8>
	at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
	at org.testng.AssertJUnit.failNotEquals(AssertJUnit.java:364)
	at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:80)
	at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:245)
(44 more lines...)
Collapse Failed AnnotationChooserTest testResetOriginalState History
< 1 sec 
Classname: java.lang.AssertionError
Message: null
Stacktrace:
java.lang.AssertionError: 
	at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
	at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49)
(44 more lines...)
Collapse Failed AnnotationChooserTest testSelectType_hideForAll History
< 1 sec 
Classname: java.lang.AssertionError
Message: null
Stacktrace:
java.lang.AssertionError: 
	at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
	at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49)
(44 more lines...)
Collapse Failed AnnotationChooserTest testSelectType_hideForSelected History
< 1 sec 
Classname: java.lang.AssertionError
Message: null
Stacktrace:
java.lang.AssertionError: 
	at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
	at org.testng.AssertJUnit.assertTrue(AssertJUnit.java:24)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:41)
	at org.testng.AssertJUnit.assertFalse(AssertJUnit.java:49)
(44 more lines...)
Collapse Failed AnnotationLabelsTest2 testIdWidthChanges(./test/files/annotation_label_width/sample.a2m, false, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130) History
3 secs 
Classname: java.lang.AssertionError
Message: idWidth (154) is not narrower than70 expected [true] but found [false]
Stacktrace:
java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertTrue(Assert.java:42)
	at jalview.gui.AnnotationLabelsTest2.__CLR4_4_140rce13nnz(AnnotationLabelsTest2.java:113)
(43 more lines...)
Collapse Failed AnnotationLabelsTest2 testIdWidthChanges(./test/files/annotation_label_width/sample.a2m, true, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130) History
< 1 sec 
Classname: java.lang.AssertionError
Message: idWidth (154) is not narrower than70 expected [true] but found [false]
Stacktrace:
java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertTrue(Assert.java:42)
	at jalview.gui.AnnotationLabelsTest2.__CLR4_4_140rce13nnz(AnnotationLabelsTest2.java:113)
(43 more lines...)
Collapse Failed AnnotationLabelsTest2 testIdWidthNoChanges(./test/files/annotation_label_width/sample.a2m, false, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130) History
< 1 sec 
Classname: java.lang.AssertionError
Message: idWidth (154) is not narrower than70 expected [true] but found [false]
Stacktrace:
java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertTrue(Assert.java:42)
	at jalview.gui.AnnotationLabelsTest2.__CLR4_4_1roan143nos(AnnotationLabelsTest2.java:183)
(43 more lines...)
Collapse Failed AnnotationLabelsTest2 testIdWidthNoChanges(./test/files/annotation_label_width/sample.a2m, true, 50, 70, 100, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb, ./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json, true, pLDDT, , 115, 130) History
< 1 sec 
Classname: java.lang.AssertionError
Message: idWidth (154) is not narrower than70 expected [true] but found [false]
Stacktrace:
java.lang.AssertionError: idWidth (154) is not narrower than70 expected [true] but found [false]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertTrue(Assert.java:42)
	at jalview.gui.AnnotationLabelsTest2.__CLR4_4_1roan143nos(AnnotationLabelsTest2.java:183)
(43 more lines...)
Collapse Failed AnnotationRowFilterTest testGetAnnotationItems History
< 1 sec 
Classname: java.lang.AssertionError
Message: expected [[Conservation, Quality, Consensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]] but found [[Conservation, Quality, Consensus, SecondaryStructureConsensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]]
Stacktrace:
java.lang.AssertionError: expected [[Conservation, Quality, Consensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]] but found [[Conservation, Quality, Consensus, SecondaryStructureConsensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]]
	at org.testng.Assert.fail(Assert.java:94)
	at org.testng.Assert.failNotEquals(Assert.java:496)
	at org.testng.Assert.assertEquals(Assert.java:125)
	at org.testng.Assert.assertEquals(Assert.java:178)
(45 more lines...)
Collapse Failed StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, Default, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, , 15, 7, 0, ) History
< 1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of viewed annotations expected:<7> but was:<8>
Stacktrace:
java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8>
	at org.junit.Assert.fail(Assert.java:88)
	at org.junit.Assert.failNotEquals(Assert.java:834)
	at org.junit.Assert.assertEquals(Assert.java:645)
	at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340)
(43 more lines...)
Collapse Failed StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, Default, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, JMOL, 15, 7, 1, ) History
< 1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of viewed annotations expected:<7> but was:<8>
Stacktrace:
java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8>
	at org.junit.Assert.fail(Assert.java:88)
	at org.junit.Assert.failNotEquals(Assert.java:834)
	at org.junit.Assert.assertEquals(Assert.java:645)
	at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340)
(43 more lines...)
Collapse Failed StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, false, false, , 15, 4, 0, ) History
< 1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of viewed annotations expected:<4> but was:<5>
Stacktrace:
java.lang.AssertionError: Wrong number of viewed annotations expected:<4> but was:<5>
	at org.junit.Assert.fail(Assert.java:88)
	at org.junit.Assert.failNotEquals(Assert.java:834)
	at org.junit.Assert.assertEquals(Assert.java:645)
	at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340)
(43 more lines...)
Collapse Failed StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, false, false, JMOL, 15, 4, 1, ) History
1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of viewed annotations expected:<4> but was:<5>
Stacktrace:
java.lang.AssertionError: Wrong number of viewed annotations expected:<4> but was:<5>
	at org.junit.Assert.fail(Assert.java:88)
	at org.junit.Assert.failNotEquals(Assert.java:834)
	at org.junit.Assert.assertEquals(Assert.java:645)
	at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340)
(43 more lines...)
Collapse Failed StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, , 15, 7, 0, ) History
< 1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of viewed annotations expected:<7> but was:<8>
Stacktrace:
java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8>
	at org.junit.Assert.fail(Assert.java:88)
	at org.junit.Assert.failNotEquals(Assert.java:834)
	at org.junit.Assert.assertEquals(Assert.java:645)
	at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340)
(43 more lines...)
Collapse Failed StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, pLDDT, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, JMOL, 15, 7, 1, ) History
1 sec 
Classname: java.lang.AssertionError
Message: Wrong number of viewed annotations expected:<7> but was:<8>
Stacktrace:
java.lang.AssertionError: Wrong number of viewed annotations expected:<7> but was:<8>
	at org.junit.Assert.fail(Assert.java:88)
	at org.junit.Assert.failNotEquals(Assert.java:834)
	at org.junit.Assert.assertEquals(Assert.java:645)
	at jalview.gui.StructureChooserTest.__CLR4_4_1nqeoac3n52(StructureChooserTest.java:340)
(43 more lines...)

Error summary

The build generated some errors. See the full build log for more details.

WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB581-JOB1/build/clover/clover-instr/jalview/analysis/Finder.java:609: warning: non-varargs call of varargs method with inexact argument type for last parameter;
      __CLR4_4_130xm30xmlvf942dy.R.inc(141393);allFeatures = sf.getAllFeatures(null);
                                                                               ^
  cast to String for a varargs call
  cast to String[] for a non-varargs call and to suppress this warning
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 warning
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB581-JOB1/src/jalview/analysis/Finder.java:609: warning: non-varargs call of varargs method with inexact argument type for last parameter;
      allFeatures = sf.getAllFeatures(null);
                                      ^
  cast to String for a varargs call
  cast to String[] for a non-varargs call and to suppress this warning
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 warning
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB581-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

1628 tests completed, 13 failed
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB581-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

49 tests completed, 10 failed
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB581-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

25 tests completed, 4 failed

FAILURE: Build failed with an exception.

* Where:
Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB581-JOB1/build.gradle' line: 1924

* What went wrong:
Failed tests!

* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.

* Get more help at https://help.gradle.org

BUILD FAILED in 8m 11s