Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
StructureLine	6	17	11	0.51612951.6%	Show methods

Class StructureLine

Class StructureLine	Line # 6	Total Statements 17	Complexity 11	TOTAL Coverage 0.51612951.6%
StructureLine(String)   StructureLine(String)	2121	10.010	4.04	0.6875 0.687568.8%
getViewerid() : String   getViewerid() : String	3939	1.01	1.01	0.0 0.00%
setViewerid(String) : void   setViewerid(String) : void	4444	1.01	1.01	0.0 0.00%
isSuperpose() : boolean   isSuperpose() : boolean	4949	1.01	1.01	0.0 0.00%
getSource() : String   getSource() : String	5454	1.01	1.01	1.0 1.0100%
getSubvals() : SubVals   getSubvals() : SubVals	5959	1.01	1.01	0.0 0.00%
getSeqid() : String   getSeqid() : String	6464	1.01	1.01	1.0 1.0100%
toString() : String   toString() : String	6969	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.516129	jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest	1PASS
	0.516129	jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest	1PASS
	0.516129	jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest	1PASS

 

Source view

1		package jalview.bin.argparser;
2
3		import jalview.bin.Cache;
4		import jalview.gui.StructureChooser;
5
		51.6% Uncovered Elements: 15 (31) Complexity: 11 Complexity Density: 0.65
6		public class StructureLine
7		{
8		private String viewerid = null;
9
10		private boolean superpose = Cache
11		.getDefault(StructureChooser.AUTOSUPERIMPOSE, true);
12
13		private String source;
14
15		private SubVals subvals;
16
17		private String seqid;
18
19		private String line;
20
		68.8% Uncovered Elements: 5 (16) Complexity: 4 Complexity Density: 0.4
21	15	public StructureLine(String line)...
22		{
23	15	this.line = line;
24	15	String[] parts = line.split("\\s+", 2);
25	15	String seqid0 = parts[0];
26	15	subvals = new SubVals(parts[1]);
27	15	source = subvals.getContent();
28	15	seqid = seqid0.length() > 0 ? seqid0 : subvals.get(Arg.SEQID.getName());
29	15	if (subvals.get(Arg.SUPERPOSE.getName()) != null)
30		{
31	0	superpose = true;
32		}
33	15	else if (subvals.get(Arg.SUPERPOSE.getNegatedName()) != null)
34		{
35	0	superpose = false;
36		}
37		}
38
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
39	0	public String getViewerid()...
40		{
41	0	return viewerid;
42		}
43
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
44	0	public void setViewerid(String viewerid)...
45		{
46	0	this.viewerid = viewerid;
47		}
48
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
49	0	public boolean isSuperpose()...
50		{
51	0	return superpose;
52		}
53
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
54	15	public String getSource()...
55		{
56	15	return source;
57		}
58
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	public SubVals getSubvals()...
60		{
61	0	return subvals;
62		}
63
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
64	15	public String getSeqid()...
65		{
66	15	return seqid;
67		}
68
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
69	0	public String toString()...
70		{
71	0	return line;
72		}
73		}