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Coverage Report

  1. Project Clover database Wed Sep 17 2025 10:52:37 BST

Package jalview.gui

 

Code metrics

8,216
22,076
2,889
146
99
76,852
53,267
8,363
0.38
7.64
19.79
2.89
Package
jalview.gui jalview.gui 99.0 99 2.8947732 2.89 0.31008708
0.3100870831%
 
Class
AnnotationColourChooser AnnotationColourChooser 21.0 21 2.7142856 2.71 0.0
0.00%
AppVarna.VarnaHighlighter AppVarna.VarnaHighlighter 6.0 6 1.6666666 1.67 0.0
0.00%
AppVarnaBinding AppVarnaBinding 32.0 32 1.71875 1.72 0.0
0.00%
AppVarnaBinding.BackupHolder AppVarnaBinding.BackupHolder 4.0 4 1.75 1.75 0.0
0.00%
ChannelsRenderer ChannelsRenderer 1.0 1 2.0 2 0.0
0.00%
ChimeraViewFrame ChimeraViewFrame 22.0 22 2.3636363 2.36 0.0
0.00%
ChimeraXViewFrame ChimeraXViewFrame 6.0 6 1.0 1 0.0
0.00%
ComboBoxTooltipRenderer ComboBoxTooltipRenderer 2.0 2 2.5 2.5 0.0
0.00%
CutAndPasteHtmlTransfer CutAndPasteHtmlTransfer 15.0 15 1.5333333 1.53 0.0
0.00%
CutAndPasteTransfer CutAndPasteTransfer 16.0 16 2.5 2.5 0.0
0.00%
EditNameDialog EditNameDialog 4.0 4 1.75 1.75 0.0
0.00%
FeatureEditor FeatureEditor 25.0 25 2.08 2.08 0.0
0.00%
FeatureIcon FeatureIcon 4.0 4 1.75 1.75 0.0
0.00%
FeatureTypeSettings FeatureTypeSettings 51.0 51 2.9019608 2.9 0.0
0.00%
Finder Finder 14.0 14 3.0714285 3.07 0.0
0.00%
FontChooser FontChooser 16.0 16 3.0 3 0.0
0.00%
Help Help 3.0 3 2.0 2 0.0
0.00%
IdPanel.ScrollThread IdPanel.ScrollThread 4.0 4 2.25 2.25 0.0
0.00%
JAL1353bugdemo JAL1353bugdemo 5.0 5 1.6 1.6 0.0
0.00%
JDatabaseTree JDatabaseTree 23.0 23 2.6956522 2.7 0.0
0.00%
JDatabaseTree.DbTreeRenderer JDatabaseTree.DbTreeRenderer 3.0 3 3.0 3 0.0
0.00%
JalviewBooleanRadioButtons JalviewBooleanRadioButtons 14.0 14 1.0 1 0.0
0.00%
JalviewChimeraBindingModel JalviewChimeraBindingModel 4.0 4 1.0 1 0.0
0.00%
JalviewChimeraXBindingModel JalviewChimeraXBindingModel 9.0 9 1.0 1 0.0
0.00%
JalviewColourChooser JalviewColourChooser 3.0 3 1.3333334 1.33 0.0
0.00%
JalviewColourChooser.ColourChooserListener JalviewColourChooser.ColourChooserListener 1.0 1 1.0 1 0.0
0.00%
LineartOptions LineartOptions 8.0 8 1.375 1.38 0.0
0.00%
MenuChooser MenuChooser 2.0 2 2.0 2 0.0
0.00%
MouseEventDemo MouseEventDemo 14.0 14 1.0 1 0.0
0.00%
MouseEventDemo.BlankArea MouseEventDemo.BlankArea 3.0 3 1.0 1 0.0
0.00%
OOMWarning OOMWarning 3.0 3 1.6666666 1.67 0.0
0.00%
OptsAndParamsPage OptsAndParamsPage 13.0 13 1.7692307 1.77 0.0
0.00%
OptsAndParamsPage.OptionBox OptsAndParamsPage.OptionBox 11.0 11 3.090909 3.09 0.0
0.00%
OptsAndParamsPage.ParamBox OptsAndParamsPage.ParamBox 25.0 25 2.96 2.96 0.0
0.00%
PCAPanel.PCAPrinter PCAPanel.PCAPrinter 2.0 2 3.5 3.5 0.0
0.00%
PaSiMapPanel PaSiMapPanel 48.0 48 1.9583334 1.96 0.0
0.00%
PaSiMapPanel.PaSiMapPrinter PaSiMapPanel.PaSiMapPrinter 2.0 2 3.5 3.5 0.0
0.00%
Preferences.OptionsParam Preferences.OptionsParam 8.0 8 1.125 1.12 0.0
0.00%
Preferences.UrlListSelectionHandler Preferences.UrlListSelectionHandler 1.0 1 4.0 4 0.0
0.00%
PrintThread PrintThread 2.0 2 2.5 2.5 0.0
0.00%
PymolBindingModel PymolBindingModel 15.0 15 1.6 1.6 0.0
0.00%
PymolViewer PymolViewer 17.0 17 2.2941177 2.29 0.0
0.00%
RedundancyPanel RedundancyPanel 7.0 7 3.4285715 3.43 0.0
0.00%
RestInputParamEditDialog RestInputParamEditDialog 15.0 15 1.9333333 1.93 0.0
0.00%
RestServiceEditorPane RestServiceEditorPane 31.0 31 2.032258 2.03 0.0
0.00%
SeqPanel.ScrollThread SeqPanel.ScrollThread 5.0 5 2.6 2.6 0.0
0.00%
SequenceFetcher.StringPair SequenceFetcher.StringPair 6.0 6 1.0 1 0.0
0.00%
StructureChooser.CachedPDB StructureChooser.CachedPDB 4.0 4 1.25 1.25 0.0
0.00%
TextColourChooser TextColourChooser 12.0 12 1.9166666 1.92 0.0
0.00%
UserDefinedColours UserDefinedColours 20.0 20 4.25 4.25 0.0
0.00%
VamsasApplication VamsasApplication 33.0 33 4.3333335 4.33 0.0
0.00%
WebserviceInfo WebserviceInfo 40.0 40 2.3 2.3 0.0
0.00%
WebserviceInfo.AnimatedPanel WebserviceInfo.AnimatedPanel 4.0 4 4.0 4 0.0
0.00%
WsJobParameters WsJobParameters 57.0 57 2.9298246 2.93 0.0
0.00%
WsPreferences WsPreferences 27.0 27 2.851852 2.85 0.0
0.00%
WsPreferences.JabaWSStatusRenderer WsPreferences.JabaWSStatusRenderer 2.0 2 2.5 2.5 0.0
0.00%
WsPreferences.WsUrlTableModel WsPreferences.WsUrlTableModel 6.0 6 1.1666666 1.17 0.0
0.00%
Preferences Preferences 36.0 36 3.5277777 3.53 0.019858155
0.0198581552%
AlignExportOptions AlignExportOptions 12.0 12 1.25 1.25 0.02631579
0.026315792.6%
CalculationChooser CalculationChooser 29.0 29 3.3448277 3.34 0.034120735
0.0341207353.4%
SequenceFetcher SequenceFetcher 35.0 35 3.1142857 3.11 0.04255319
0.042553194.3%
WsParamSetManager WsParamSetManager 5.0 5 7.4 7.4 0.042944785
0.0429447854.3%
ViewSelectionMenu ViewSelectionMenu 11.0 11 2.4545455 2.45 0.05940594
0.059405945.9%
IdPanel IdPanel 19.0 19 3.4210527 3.42 0.06726457
0.067264576.7%
FeatureSettings.ColorEditor FeatureSettings.ColorEditor 7.0 7 1.7142857 1.71 0.071428575
0.0714285757.1%
AppVarna AppVarna 26.0 26 2.8846154 2.88 0.09059233
0.090592339.1%
FeatureSettings.FilterEditor FeatureSettings.FilterEditor 4.0 4 2.0 2 0.104166664
0.10416666410.4%
FeatureSettings.ColorRenderer FeatureSettings.ColorRenderer 2.0 2 3.0 3 0.13333334
0.1333333413.3%
FeatureSettings.FilterRenderer FeatureSettings.FilterRenderer 2.0 2 3.0 3 0.14285715
0.1428571514.3%
SeqPanel SeqPanel 57.0 57 7.245614 7.25 0.16260698
0.1626069816.3%
TreeCanvas TreeCanvas 53.0 53 5.1509433 5.15 0.1844946
0.184494618.4%
RotatableCanvas RotatableCanvas 44.0 44 2.25 2.25 0.18863049
0.1886304918.9%
Desktop.MyDesktopManager Desktop.MyDesktopManager 16.0 16 1.1875 1.19 0.2
0.220%
BlogReader.LaunchJvBrowserOnItem BlogReader.LaunchJvBrowserOnItem 3.0 3 2.3333333 2.33 0.20833333
0.2083333320.8%
StructureChooser.PDBEntryTableModel StructureChooser.PDBEntryTableModel 8.0 8 1.875 1.88 0.21052632
0.2105263221.1%
AnnotationPanel AnnotationPanel 41.0 41 6.097561 6.1 0.22058824
0.2205882422.1%
SeqPanel.MousePos SeqPanel.MousePos 5.0 5 1.4 1.4 0.22222222
0.2222222222.2%
JvOptionPane JvOptionPane 71.0 71 3.4366198 3.44 0.24839126
0.2483912624.8%
AnnotationColumnChooser.StructureFilterPanel AnnotationColumnChooser.StructureFilterPanel 11.0 11 1.5454545 1.55 0.28985506
0.2898550629%
FeatureSettings.FeatureTableModel FeatureSettings.FeatureTableModel 11.0 11 1.3636364 1.36 0.29411766
0.2941176629.4%
Desktop.MyDesktopPane Desktop.MyDesktopPane 5.0 5 2.6 2.6 0.30952382
0.3095238231%
AlignFrame AlignFrame 262.0 262 2.8740458 2.87 0.32734805
0.3273480532.7%
UserQuestionnaireCheck UserQuestionnaireCheck 3.0 3 8.333333 8.33 0.3493976
0.349397634.9%
IdwidthAdjuster IdwidthAdjuster 11.0 11 2.090909 2.09 0.35526314
0.3552631435.5%
AnnotationLabels AnnotationLabels 43.0 43 5.72093 5.72 0.35714287
0.3571428735.7%
SplitFrame SplitFrame 51.0 51 2.3921568 2.39 0.3576159
0.357615935.8%
StructureChooser StructureChooser 63.0 63 3.3492064 3.35 0.39842874
0.3984287439.8%
AnnotationRowFilter AnnotationRowFilter 42.0 42 1.6904762 1.69 0.40528634
0.4052863440.5%
PCAPanel PCAPanel 39.0 39 1.7179487 1.72 0.41732284
0.4173228441.7%
AppJmol.RenderPanel AppJmol.RenderPanel 1.0 1 10.0 10 0.43243244
0.4324324443.2%
APQHandlers APQHandlers 1.0 1 5.0 5 0.4347826
0.434782643.5%
PopupMenu PopupMenu 102.0 102 2.27451 2.27 0.43636364
0.4363636443.6%
Desktop Desktop 142.0 142 3.309859 3.31 0.44419134
0.4441913444.4%
JvSwingUtils JvSwingUtils 19.0 19 2.1578948 2.16 0.46938777
0.4693877746.9%
AnnotationColumnChooser.SearchPanel AnnotationColumnChooser.SearchPanel 10.0 10 1.4 1.4 0.47457626
0.4745762647.5%
FeatureSettings FeatureSettings 66.0 66 2.621212 2.62 0.49014777
0.4901477749%
TreePanel TreePanel 70.0 70 1.7857143 1.79 0.4990138
0.499013849.9%
ImageExporter ImageExporter 5.0 5 3.6 3.6 0.5
0.550%
PairwiseAlignPanel PairwiseAlignPanel 24.0 24 2.0833333 2.08 0.50510204
0.5051020450.5%
ProgressBar ProgressBar 14.0 14 2.4285715 2.43 0.5121951
0.512195151.2%
CrossRefAction CrossRefAction 9.0 9 6.111111 6.11 0.51363635
0.5136363551.4%
StructureViewerBase StructureViewerBase 83.0 83 2.3975904 2.4 0.52958155
0.5295815553%
Console Console 33.0 33 3.3333333 3.33 0.54357797
0.5435779754.4%
AnnotationExporter AnnotationExporter 19.0 19 1.8947369 1.89 0.5502958
0.550295855%
ColourMenuHelper ColourMenuHelper 9.0 9 3.5555556 3.56 0.5508475
0.550847555.1%
PromptUserConfig PromptUserConfig 5.0 5 4.6 4.6 0.5568182
0.556818255.7%
Slider Slider 6.0 6 1.1666666 1.17 0.5652174
0.565217456.5%
AnnotationColumnChooser AnnotationColumnChooser 25.0 25 2.16 2.16 0.5812274
0.581227458.1%
OverviewPanel OverviewPanel 23.0 23 2.0 2 0.58235294
0.5823529458.2%
StructureViewer StructureViewer 25.0 25 2.6 2.6 0.5855856
0.585585658.6%
AnnotationColumnChooser.FurtherActionPanel AnnotationColumnChooser.FurtherActionPanel 6.0 6 1.1666666 1.17 0.5862069
0.586206958.6%
PaintRefresher PaintRefresher 6.0 6 5.8333335 5.83 0.5915493
0.591549359.2%
SequenceRenderer SequenceRenderer 9.0 9 6.888889 6.89 0.6057692
0.605769260.6%
AppJmolBinding AppJmolBinding 18.0 18 2.2222223 2.22 0.60747665
0.6074766560.7%
JalviewDialog JalviewDialog 7.0 7 1.4285715 1.43 0.6097561
0.609756161%
BlogReader BlogReader 39.0 39 2.5384614 2.54 0.6160221
0.616022161.6%
SeqCanvas SeqCanvas 37.0 37 5.7027025 5.7 0.6292585
0.629258562.9%
SliderPanel SliderPanel 29.0 29 2.4827585 2.48 0.6356589
0.635658963.6%
AlignmentPanel AlignmentPanel 74.0 74 2.7027028 2.7 0.6442874
0.644287464.4%
AssociatePdbFileWithSeq AssociatePdbFileWithSeq 2.0 2 4.5 4.5 0.65
0.6565%
AlignViewport AlignViewport 52.0 52 2.3653846 2.37 0.6803653
0.680365368%
AppJmol AppJmol 23.0 23 2.7826087 2.78 0.68401486
0.6840148668.4%
ScalePanel ScalePanel 18.0 18 3.1666667 3.17 0.69921875
0.6992187569.9%
Help.HelpId Help.HelpId 3.0 3 1.0 1 0.71428573
0.7142857371.4%
QuitHandler QuitHandler 14.0 14 4.642857 4.64 0.732852
0.73285273.3%
JalviewChangeSupport JalviewChangeSupport 4.0 4 1.0 1 0.75
0.7575%
OverviewCanvas OverviewCanvas 10.0 10 2.8 2.8 0.7758621
0.775862177.6%
SplashScreen SplashScreen 8.0 8 4.125 4.12 0.8051948
0.805194880.5%
IdCanvas IdCanvas 16.0 16 4.5625 4.56 0.86315787
0.8631578786.3%
SplashScreen.SplashImage SplashScreen.SplashImage 3.0 3 1.6666666 1.67 0.88235295
0.8823529588.2%
ItemsRenderer ItemsRenderer 1.0 1 4.0 4 0.8888889
0.888888988.9%
AnnotationChooser AnnotationChooser 33.0 33 1.7878788 1.79 0.9066667
0.906666790.7%
TreePanel.TreeLoader TreePanel.TreeLoader 2.0 2 6.0 6 0.9148936
0.914893691.5%
StructureViewer.ViewerType StructureViewer.ViewerType 2.0 2 2.0 2 0.9285714
0.928571492.9%
ProgressPanel ProgressPanel 3.0 3 2.3333333 2.33 0.9756098
0.975609897.6%
FeatureRenderer FeatureRenderer 1.0 1 4.0 4 1.0
1.0100%
This package contains 10 empty classes or interfaces which are not listed.
  • Report generated by OpenClover v 4.4.1 on Wed Sep 17 2025 11:01:30 BST using coverage data from Wed Sep 17 2025 11:01:17 BST.
  • OpenClover is free and open-source software.