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Coverage Report

  1. Project Clover database Wed Nov 13 2024 16:21:17 GMT
  2. Package jalview.xml.binding.jalview

File Sequence.java

 

Coverage histogram

../../../../img/srcFileCovDistChart10.png
0% of files have more coverage

Code metrics

6
23
17
2
340
124
20
0.87
1.35
8.5
1.18

Classes

Class Line # Actions
Sequence 55 7 6
0.7142857371.4%
Sequence.DBRef 165 16 14
1.0100%
 

Contributing tests

This file is covered by 32 tests. .

Source view

1    //
2    // This file was generated by the Eclipse Implementation of JAXB, v2.3.3
3    // See https://eclipse-ee4j.github.io/jaxb-ri
4    // Any modifications to this file will be lost upon recompilation of the source schema.
5    // Generated on: 2023.11.01 at 07:03:09 PM GMT
6    //
7   
8    package jalview.xml.binding.jalview;
9   
10    import java.util.ArrayList;
11    import java.util.List;
12    import javax.xml.bind.annotation.XmlAccessType;
13    import javax.xml.bind.annotation.XmlAccessorType;
14    import javax.xml.bind.annotation.XmlAttribute;
15    import javax.xml.bind.annotation.XmlElement;
16    import javax.xml.bind.annotation.XmlRootElement;
17    import javax.xml.bind.annotation.XmlType;
18   
19    /**
20    * <p>Java class for anonymous complex type.
21    *
22    * <p>The following schema fragment specifies the expected content
23    * contained within this class.
24    *
25    * <pre> <complexType> <complexContent>
26    * <extension
27    * base="{www.vamsas.ac.uk/jalview/version2}SequenceType">
28    * <sequence> <element name="DBRef" maxOccurs="unbounded"
29    * minOccurs="0"> <complexType>
30    * <complexContent> <restriction
31    * base="{http://www.w3.org/2001/XMLSchema}anyType">
32    * <sequence> <element
33    * ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
34    * </sequence> <attribute name="source"
35    * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute
36    * name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
37    * <attribute name="accessionId"
38    * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute
39    * name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false"
40    * /> <attribute name="canonical"
41    * type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
42    * </restriction> </complexContent>
43    * </complexType> </element>
44    * </sequence> <attribute name="dsseqid"
45    * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute
46    * name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" />
47    * </extension> </complexContent>
48    * </complexType> </pre>
49    *
50    *
51    */
52    @XmlAccessorType(XmlAccessType.FIELD)
53    @XmlType(name = "", propOrder = { "dbRef" })
54    @XmlRootElement(name = "Sequence")
 
55    public class Sequence extends SequenceType
56    {
57   
58    @XmlElement(name = "DBRef")
59    protected List<Sequence.DBRef> dbRef;
60   
61    @XmlAttribute(name = "dsseqid")
62    protected String dsseqid;
63   
64    @XmlAttribute(name = "biotype")
65    protected String biotype;
66   
67    /**
68    * Gets the value of the dbRef property.
69    *
70    * &lt;p&gt; This accessor method returns a reference to the live list, not a
71    * snapshot. Therefore any modification you make to the returned list will be
72    * present inside the JAXB object. This is why there is not a
73    * &lt;CODE&gt;set&lt;/CODE&gt; method for the dbRef property.
74    *
75    * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
76    * getDBRef().add(newItem); &lt;/pre&gt;
77    *
78    *
79    * &lt;p&gt; Objects of the following type(s) are allowed in the list
80    * {@link Sequence.DBRef }
81    *
82    *
83    */
 
84  3509 toggle public List<Sequence.DBRef> getDBRef()
85    {
86  3509 if (dbRef == null)
87    {
88  808 dbRef = new ArrayList<Sequence.DBRef>();
89    }
90  3509 return this.dbRef;
91    }
92   
93    /**
94    * Gets the value of the dsseqid property.
95    *
96    * @return possible object is {@link String }
97    *
98    */
 
99  2158 toggle public String getDsseqid()
100    {
101  2158 return dsseqid;
102    }
103   
104    /**
105    * Sets the value of the dsseqid property.
106    *
107    * @param value
108    * allowed object is {@link String }
109    *
110    */
 
111  760 toggle public void setDsseqid(String value)
112    {
113  760 this.dsseqid = value;
114    }
115   
116    /**
117    * Gets the value of the biotype property.
118    *
119    * @return possible object is {@link String }
120    *
121    */
 
122  0 toggle public String getBiotype()
123    {
124  0 return biotype;
125    }
126   
127    /**
128    * Sets the value of the biotype property.
129    *
130    * @param value
131    * allowed object is {@link String }
132    *
133    */
 
134  0 toggle public void setBiotype(String value)
135    {
136  0 this.biotype = value;
137    }
138   
139    /**
140    * &lt;p&gt;Java class for anonymous complex type.
141    *
142    * &lt;p&gt;The following schema fragment specifies the expected content
143    * contained within this class.
144    *
145    * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
146    * &amp;lt;restriction
147    * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
148    * &amp;lt;sequence&amp;gt; &amp;lt;element
149    * ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/&amp;gt;
150    * &amp;lt;/sequence&amp;gt; &amp;lt;attribute name="source"
151    * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt; &amp;lt;attribute
152    * name="version" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
153    * &amp;lt;attribute name="accessionId"
154    * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt; &amp;lt;attribute
155    * name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean"
156    * default="false" /&amp;gt; &amp;lt;attribute name="canonical"
157    * type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
158    * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
159    * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
160    *
161    *
162    */
163    @XmlAccessorType(XmlAccessType.FIELD)
164    @XmlType(name = "", propOrder = { "mapping" })
 
165    public static class DBRef
166    {
167   
168    @XmlElement(name = "Mapping")
169    protected Mapping mapping;
170   
171    @XmlAttribute(name = "source")
172    protected String source;
173   
174    @XmlAttribute(name = "version")
175    protected String version;
176   
177    @XmlAttribute(name = "accessionId")
178    protected String accessionId;
179   
180    @XmlAttribute(name = "locus")
181    protected Boolean locus;
182   
183    @XmlAttribute(name = "canonical")
184    protected Boolean canonical;
185   
186    /**
187    * Gets the value of the mapping property.
188    *
189    * @return possible object is {@link Mapping }
190    *
191    */
 
192  1137 toggle public Mapping getMapping()
193    {
194  1137 return mapping;
195    }
196   
197    /**
198    * Sets the value of the mapping property.
199    *
200    * @param value
201    * allowed object is {@link Mapping }
202    *
203    */
 
204  2 toggle public void setMapping(Mapping value)
205    {
206  2 this.mapping = value;
207    }
208   
209    /**
210    * Gets the value of the source property.
211    *
212    * @return possible object is {@link String }
213    *
214    */
 
215  1091 toggle public String getSource()
216    {
217  1091 return source;
218    }
219   
220    /**
221    * Sets the value of the source property.
222    *
223    * @param value
224    * allowed object is {@link String }
225    *
226    */
 
227  234 toggle public void setSource(String value)
228    {
229  234 this.source = value;
230    }
231   
232    /**
233    * Gets the value of the version property.
234    *
235    * @return possible object is {@link String }
236    *
237    */
 
238  1091 toggle public String getVersion()
239    {
240  1091 return version;
241    }
242   
243    /**
244    * Sets the value of the version property.
245    *
246    * @param value
247    * allowed object is {@link String }
248    *
249    */
 
250  234 toggle public void setVersion(String value)
251    {
252  234 this.version = value;
253    }
254   
255    /**
256    * Gets the value of the accessionId property.
257    *
258    * @return possible object is {@link String }
259    *
260    */
 
261  1091 toggle public String getAccessionId()
262    {
263  1091 return accessionId;
264    }
265   
266    /**
267    * Sets the value of the accessionId property.
268    *
269    * @param value
270    * allowed object is {@link String }
271    *
272    */
 
273  234 toggle public void setAccessionId(String value)
274    {
275  234 this.accessionId = value;
276    }
277   
278    /**
279    * Gets the value of the locus property.
280    *
281    * @return possible object is {@link Boolean }
282    *
283    */
 
284  1091 toggle public boolean isLocus()
285    {
286  1091 if (locus == null)
287    {
288  1068 return false;
289    }
290    else
291    {
292  23 return locus;
293    }
294    }
295   
296    /**
297    * Sets the value of the locus property.
298    *
299    * @param value
300    * allowed object is {@link Boolean }
301    *
302    */
 
303  1 toggle public void setLocus(Boolean value)
304    {
305  1 this.locus = value;
306    }
307   
308    /**
309    * Gets the value of the canonical property.
310    *
311    * @return possible object is {@link Boolean }
312    *
313    */
 
314  1091 toggle public boolean isCanonical()
315    {
316  1091 if (canonical == null)
317    {
318  925 return false;
319    }
320    else
321    {
322  166 return canonical;
323    }
324    }
325   
326    /**
327    * Sets the value of the canonical property.
328    *
329    * @param value
330    * allowed object is {@link Boolean }
331    *
332    */
 
333  234 toggle public void setCanonical(Boolean value)
334    {
335  234 this.canonical = value;
336    }
337   
338    }
339   
340    }
  • Report generated by OpenClover v 4.4.1 on Wed Nov 13 2024 16:28:33 GMT using coverage data from Wed Nov 13 2024 16:28:18 GMT.
  • OpenClover is free and open-source software.