Clover icon

Coverage Report

  1. Project Clover database Wed Nov 13 2024 16:21:17 GMT
  2. Package jalview.datamodel.annotations

File AnnotationRowBuilder.java

 

Coverage histogram

../../../img/srcFileCovDistChart5.png
43% of files have more coverage

Code metrics

0
21
18
1
144
87
18
0.86
1.17
18
1

Classes

Class Line # Actions
AnnotationRowBuilder 26 21 18
0.4358974443.6%
 

Contributing tests

This file is covered by 55 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.datamodel.annotations;
22   
23    import jalview.datamodel.Annotation;
24    import jalview.structure.StructureImportSettings.TFType;
25   
 
26    public class AnnotationRowBuilder
27    {
28   
29    String name;
30   
31    boolean hasDescription = false;
32   
33    String description;
34   
35    boolean hasMinMax = false;
36   
37    /**
38    * the type of temperature factor plot (if it is one)
39    */
40    // private TFType tfType = TFType.DEFAULT;
41    private TFType tfType = null;
42   
 
43  34 toggle public void setTFType(TFType t)
44    {
45  34 tfType = t;
46    }
47   
 
48  203 toggle public TFType getTFType()
49    {
50  203 return tfType;
51    }
52   
 
53  406 toggle public String getName()
54    {
55  406 return name;
56    }
57   
 
58  0 toggle public void setName(String name)
59    {
60  0 this.name = name;
61    }
62   
 
63  203 toggle public boolean isHasDescription()
64    {
65  203 return hasDescription;
66    }
67   
 
68  0 toggle public void setHasDescription(boolean hasDescription)
69    {
70  0 this.hasDescription = hasDescription;
71    }
72   
 
73  0 toggle public String getDescription()
74    {
75  0 return description;
76    }
77   
 
78  0 toggle public void setDescription(String description)
79    {
80  0 this.description = description;
81    }
82   
 
83  203 toggle public boolean isHasMinMax()
84    {
85  203 return hasMinMax;
86    }
87   
 
88  0 toggle public void setHasMinMax(boolean hasMinMax)
89    {
90  0 this.hasMinMax = hasMinMax;
91    }
92   
 
93  27 toggle public float getMin()
94    {
95  27 return min;
96    }
97   
 
98  0 toggle public void setMin(float min)
99    {
100  0 this.min = min;
101    }
102   
 
103  27 toggle public float getMax()
104    {
105  27 return max;
106    }
107   
 
108  0 toggle public void setMax(float max)
109    {
110  0 this.max = max;
111    }
112   
113    float min, max;
114   
 
115  348 toggle public AnnotationRowBuilder(String string)
116    {
117  348 name = string;
118    }
119   
 
120  0 toggle public AnnotationRowBuilder(String name, float min, float max, TFType tft)
121    {
122  0 this(name, min, max);
123  0 setTFType(tft);
124    }
125   
 
126  0 toggle public AnnotationRowBuilder(String name, float min, float max)
127    {
128  0 this(name);
129  0 this.min = min;
130  0 this.max = max;
131  0 this.hasMinMax = true;
132    }
133   
134    /**
135    * override this to apply some form of transformation to the annotation - eg a
136    * colourscheme
137    *
138    * @param annotation
139    */
 
140  30599 toggle public void processAnnotation(Annotation annotation)
141    {
142   
143    }
144    }
  • Report generated by OpenClover v 4.4.1 on Wed Nov 13 2024 16:28:33 GMT using coverage data from Wed Nov 13 2024 16:28:18 GMT.
  • OpenClover is free and open-source software.