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package jalview.schemabinding.version2.descriptors; |
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import jalview.schemabinding.version2.Tree; |
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@version |
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| 74.7% |
Uncovered Elements: 123 (486) |
Complexity: 102 |
Complexity Density: 0.27 |
|
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public class TreeDescriptor extends |
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org.exolab.castor.xml.util.XMLClassDescriptorImpl |
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{ |
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private boolean _elementDefinition; |
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private java.lang.String _nsPrefix; |
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private java.lang.String _nsURI; |
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private java.lang.String _xmlName; |
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| 100% |
Uncovered Elements: 0 (191) |
Complexity: 1 |
Complexity Density: 0.01 |
|
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public TreeDescriptor()... |
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{ |
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super(); |
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_nsURI = "www.jalview.org"; |
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_xmlName = "tree"; |
58 |
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_elementDefinition = true; |
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60 |
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61 |
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setCompositorAsSequence(); |
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org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; |
63 |
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org.exolab.castor.mapping.FieldHandler handler = null; |
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org.exolab.castor.xml.FieldValidator fieldValidator = null; |
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desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
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java.lang.String.class, "_fontName", "fontName", |
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org.exolab.castor.xml.NodeType.Attribute); |
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desc.setImmutable(true); |
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handler = new org.exolab.castor.xml.XMLFieldHandler() |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
74 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
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throws IllegalStateException |
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{ |
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Tree target = (Tree) object; |
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return target.getFontName(); |
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} |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
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public void setValue(java.lang.Object object, java.lang.Object value)... |
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throws IllegalStateException, IllegalArgumentException |
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{ |
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try |
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{ |
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Tree target = (Tree) object; |
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target.setFontName((java.lang.String) value); |
88 |
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} catch (java.lang.Exception ex) |
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{ |
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throw new IllegalStateException(ex.toString()); |
91 |
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} |
92 |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public java.lang.Object newInstance(java.lang.Object parent)... |
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{ |
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return null; |
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} |
98 |
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}; |
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desc.setHandler(handler); |
100 |
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desc.setMultivalued(false); |
101 |
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addFieldDescriptor(desc); |
102 |
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103 |
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104 |
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fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
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{ |
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org.exolab.castor.xml.validators.StringValidator typeValidator; |
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typeValidator = new org.exolab.castor.xml.validators.StringValidator(); |
108 |
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fieldValidator.setValidator(typeValidator); |
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typeValidator.setWhiteSpace("preserve"); |
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} |
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desc.setValidator(fieldValidator); |
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desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
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java.lang.Integer.TYPE, "_fontSize", "fontSize", |
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org.exolab.castor.xml.NodeType.Attribute); |
116 |
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handler = new org.exolab.castor.xml.XMLFieldHandler() |
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{ |
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| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
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public java.lang.Object getValue(java.lang.Object object)... |
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throws IllegalStateException |
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{ |
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Tree target = (Tree) object; |
122 |
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if (!target.hasFontSize()) |
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{ |
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return null; |
125 |
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} |
126 |
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return new java.lang.Integer(target.getFontSize()); |
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} |
128 |
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| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
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12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
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throws IllegalStateException, IllegalArgumentException |
131 |
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{ |
132 |
12 |
try |
133 |
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{ |
134 |
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Tree target = (Tree) object; |
135 |
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136 |
12 |
if (value == null) |
137 |
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{ |
138 |
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target.deleteFontSize(); |
139 |
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return; |
140 |
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} |
141 |
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target.setFontSize(((java.lang.Integer) value).intValue()); |
142 |
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} catch (java.lang.Exception ex) |
143 |
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{ |
144 |
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throw new IllegalStateException(ex.toString()); |
145 |
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} |
146 |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public java.lang.Object newInstance(java.lang.Object parent)... |
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{ |
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return null; |
151 |
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} |
152 |
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}; |
153 |
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desc.setHandler(handler); |
154 |
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desc.setMultivalued(false); |
155 |
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addFieldDescriptor(desc); |
156 |
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|
157 |
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158 |
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fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
159 |
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{ |
160 |
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org.exolab.castor.xml.validators.IntValidator typeValidator; |
161 |
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typeValidator = new org.exolab.castor.xml.validators.IntValidator(); |
162 |
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fieldValidator.setValidator(typeValidator); |
163 |
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typeValidator.setMinInclusive(-2147483648); |
164 |
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typeValidator.setMaxInclusive(2147483647); |
165 |
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} |
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desc.setValidator(fieldValidator); |
167 |
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|
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desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
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java.lang.Integer.TYPE, "_fontStyle", "fontStyle", |
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org.exolab.castor.xml.NodeType.Attribute); |
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handler = new org.exolab.castor.xml.XMLFieldHandler() |
172 |
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{ |
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| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
173 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
174 |
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throws IllegalStateException |
175 |
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{ |
176 |
4 |
Tree target = (Tree) object; |
177 |
4 |
if (!target.hasFontStyle()) |
178 |
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{ |
179 |
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return null; |
180 |
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} |
181 |
4 |
return new java.lang.Integer(target.getFontStyle()); |
182 |
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} |
183 |
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| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
184 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
185 |
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throws IllegalStateException, IllegalArgumentException |
186 |
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{ |
187 |
12 |
try |
188 |
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{ |
189 |
12 |
Tree target = (Tree) object; |
190 |
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|
191 |
12 |
if (value == null) |
192 |
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{ |
193 |
0 |
target.deleteFontStyle(); |
194 |
0 |
return; |
195 |
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} |
196 |
12 |
target.setFontStyle(((java.lang.Integer) value).intValue()); |
197 |
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} catch (java.lang.Exception ex) |
198 |
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{ |
199 |
0 |
throw new IllegalStateException(ex.toString()); |
200 |
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} |
201 |
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} |
202 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
203 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
204 |
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{ |
205 |
0 |
return null; |
206 |
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} |
207 |
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}; |
208 |
16 |
desc.setHandler(handler); |
209 |
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desc.setMultivalued(false); |
210 |
16 |
addFieldDescriptor(desc); |
211 |
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212 |
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213 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
214 |
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{ |
215 |
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org.exolab.castor.xml.validators.IntValidator typeValidator; |
216 |
16 |
typeValidator = new org.exolab.castor.xml.validators.IntValidator(); |
217 |
16 |
fieldValidator.setValidator(typeValidator); |
218 |
16 |
typeValidator.setMinInclusive(-2147483648); |
219 |
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typeValidator.setMaxInclusive(2147483647); |
220 |
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} |
221 |
16 |
desc.setValidator(fieldValidator); |
222 |
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|
223 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
224 |
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java.lang.Float.TYPE, "_threshold", "threshold", |
225 |
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org.exolab.castor.xml.NodeType.Attribute); |
226 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
227 |
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{ |
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| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
228 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
229 |
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throws IllegalStateException |
230 |
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{ |
231 |
4 |
Tree target = (Tree) object; |
232 |
4 |
if (!target.hasThreshold()) |
233 |
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{ |
234 |
0 |
return null; |
235 |
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} |
236 |
4 |
return new java.lang.Float(target.getThreshold()); |
237 |
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} |
238 |
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| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
239 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
240 |
|
throws IllegalStateException, IllegalArgumentException |
241 |
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{ |
242 |
12 |
try |
243 |
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{ |
244 |
12 |
Tree target = (Tree) object; |
245 |
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|
246 |
12 |
if (value == null) |
247 |
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{ |
248 |
0 |
target.deleteThreshold(); |
249 |
0 |
return; |
250 |
|
} |
251 |
12 |
target.setThreshold(((java.lang.Float) value).floatValue()); |
252 |
|
} catch (java.lang.Exception ex) |
253 |
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{ |
254 |
0 |
throw new IllegalStateException(ex.toString()); |
255 |
|
} |
256 |
|
} |
257 |
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|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
258 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
259 |
|
{ |
260 |
0 |
return null; |
261 |
|
} |
262 |
|
}; |
263 |
16 |
desc.setHandler(handler); |
264 |
16 |
desc.setMultivalued(false); |
265 |
16 |
addFieldDescriptor(desc); |
266 |
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|
267 |
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|
268 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
269 |
|
{ |
270 |
16 |
org.exolab.castor.xml.validators.FloatValidator typeValidator; |
271 |
16 |
typeValidator = new org.exolab.castor.xml.validators.FloatValidator(); |
272 |
16 |
fieldValidator.setValidator(typeValidator); |
273 |
16 |
typeValidator.setMinInclusive((float) -3.4028235E38); |
274 |
16 |
typeValidator.setMaxInclusive((float) 3.4028235E38); |
275 |
|
} |
276 |
16 |
desc.setValidator(fieldValidator); |
277 |
|
|
278 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
279 |
|
java.lang.Boolean.TYPE, "_showBootstrap", "showBootstrap", |
280 |
|
org.exolab.castor.xml.NodeType.Attribute); |
281 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
282 |
|
{ |
|
|
| 62.5% |
Uncovered Elements: 3 (8) |
Complexity: 3 |
Complexity Density: 0.75 |
|
283 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
284 |
|
throws IllegalStateException |
285 |
|
{ |
286 |
4 |
Tree target = (Tree) object; |
287 |
4 |
if (!target.hasShowBootstrap()) |
288 |
|
{ |
289 |
0 |
return null; |
290 |
|
} |
291 |
4 |
return (target.getShowBootstrap() ? java.lang.Boolean.TRUE |
292 |
|
: java.lang.Boolean.FALSE); |
293 |
|
} |
294 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
295 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
296 |
|
throws IllegalStateException, IllegalArgumentException |
297 |
|
{ |
298 |
12 |
try |
299 |
|
{ |
300 |
12 |
Tree target = (Tree) object; |
301 |
|
|
302 |
12 |
if (value == null) |
303 |
|
{ |
304 |
0 |
target.deleteShowBootstrap(); |
305 |
0 |
return; |
306 |
|
} |
307 |
12 |
target.setShowBootstrap(((java.lang.Boolean) value) |
308 |
|
.booleanValue()); |
309 |
|
} catch (java.lang.Exception ex) |
310 |
|
{ |
311 |
0 |
throw new IllegalStateException(ex.toString()); |
312 |
|
} |
313 |
|
} |
314 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
315 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
316 |
|
{ |
317 |
0 |
return null; |
318 |
|
} |
319 |
|
}; |
320 |
16 |
desc.setHandler(handler); |
321 |
16 |
desc.setMultivalued(false); |
322 |
16 |
addFieldDescriptor(desc); |
323 |
|
|
324 |
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|
325 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
326 |
|
{ |
327 |
16 |
org.exolab.castor.xml.validators.BooleanValidator typeValidator; |
328 |
16 |
typeValidator = new org.exolab.castor.xml.validators.BooleanValidator(); |
329 |
16 |
fieldValidator.setValidator(typeValidator); |
330 |
|
} |
331 |
16 |
desc.setValidator(fieldValidator); |
332 |
|
|
333 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
334 |
|
java.lang.Boolean.TYPE, "_showDistances", "showDistances", |
335 |
|
org.exolab.castor.xml.NodeType.Attribute); |
336 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
337 |
|
{ |
|
|
| 62.5% |
Uncovered Elements: 3 (8) |
Complexity: 3 |
Complexity Density: 0.75 |
|
338 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
339 |
|
throws IllegalStateException |
340 |
|
{ |
341 |
4 |
Tree target = (Tree) object; |
342 |
4 |
if (!target.hasShowDistances()) |
343 |
|
{ |
344 |
0 |
return null; |
345 |
|
} |
346 |
4 |
return (target.getShowDistances() ? java.lang.Boolean.TRUE |
347 |
|
: java.lang.Boolean.FALSE); |
348 |
|
} |
349 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
350 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
351 |
|
throws IllegalStateException, IllegalArgumentException |
352 |
|
{ |
353 |
12 |
try |
354 |
|
{ |
355 |
12 |
Tree target = (Tree) object; |
356 |
|
|
357 |
12 |
if (value == null) |
358 |
|
{ |
359 |
0 |
target.deleteShowDistances(); |
360 |
0 |
return; |
361 |
|
} |
362 |
12 |
target.setShowDistances(((java.lang.Boolean) value) |
363 |
|
.booleanValue()); |
364 |
|
} catch (java.lang.Exception ex) |
365 |
|
{ |
366 |
0 |
throw new IllegalStateException(ex.toString()); |
367 |
|
} |
368 |
|
} |
369 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
370 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
371 |
|
{ |
372 |
0 |
return null; |
373 |
|
} |
374 |
|
}; |
375 |
16 |
desc.setHandler(handler); |
376 |
16 |
desc.setMultivalued(false); |
377 |
16 |
addFieldDescriptor(desc); |
378 |
|
|
379 |
|
|
380 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
381 |
|
{ |
382 |
16 |
org.exolab.castor.xml.validators.BooleanValidator typeValidator; |
383 |
16 |
typeValidator = new org.exolab.castor.xml.validators.BooleanValidator(); |
384 |
16 |
fieldValidator.setValidator(typeValidator); |
385 |
|
} |
386 |
16 |
desc.setValidator(fieldValidator); |
387 |
|
|
388 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
389 |
|
java.lang.Boolean.TYPE, "_markUnlinked", "markUnlinked", |
390 |
|
org.exolab.castor.xml.NodeType.Attribute); |
391 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
392 |
|
{ |
|
|
| 62.5% |
Uncovered Elements: 3 (8) |
Complexity: 3 |
Complexity Density: 0.75 |
|
393 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
394 |
|
throws IllegalStateException |
395 |
|
{ |
396 |
4 |
Tree target = (Tree) object; |
397 |
4 |
if (!target.hasMarkUnlinked()) |
398 |
|
{ |
399 |
0 |
return null; |
400 |
|
} |
401 |
4 |
return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE |
402 |
|
: java.lang.Boolean.FALSE); |
403 |
|
} |
404 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
405 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
406 |
|
throws IllegalStateException, IllegalArgumentException |
407 |
|
{ |
408 |
12 |
try |
409 |
|
{ |
410 |
12 |
Tree target = (Tree) object; |
411 |
|
|
412 |
12 |
if (value == null) |
413 |
|
{ |
414 |
0 |
target.deleteMarkUnlinked(); |
415 |
0 |
return; |
416 |
|
} |
417 |
12 |
target.setMarkUnlinked(((java.lang.Boolean) value).booleanValue()); |
418 |
|
} catch (java.lang.Exception ex) |
419 |
|
{ |
420 |
0 |
throw new IllegalStateException(ex.toString()); |
421 |
|
} |
422 |
|
} |
423 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
424 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
425 |
|
{ |
426 |
0 |
return null; |
427 |
|
} |
428 |
|
}; |
429 |
16 |
desc.setHandler(handler); |
430 |
16 |
desc.setMultivalued(false); |
431 |
16 |
addFieldDescriptor(desc); |
432 |
|
|
433 |
|
|
434 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
435 |
|
{ |
436 |
16 |
org.exolab.castor.xml.validators.BooleanValidator typeValidator; |
437 |
16 |
typeValidator = new org.exolab.castor.xml.validators.BooleanValidator(); |
438 |
16 |
fieldValidator.setValidator(typeValidator); |
439 |
|
} |
440 |
16 |
desc.setValidator(fieldValidator); |
441 |
|
|
442 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
443 |
|
java.lang.Boolean.TYPE, "_fitToWindow", "fitToWindow", |
444 |
|
org.exolab.castor.xml.NodeType.Attribute); |
445 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
446 |
|
{ |
|
|
| 62.5% |
Uncovered Elements: 3 (8) |
Complexity: 3 |
Complexity Density: 0.75 |
|
447 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
448 |
|
throws IllegalStateException |
449 |
|
{ |
450 |
4 |
Tree target = (Tree) object; |
451 |
4 |
if (!target.hasFitToWindow()) |
452 |
|
{ |
453 |
0 |
return null; |
454 |
|
} |
455 |
4 |
return (target.getFitToWindow() ? java.lang.Boolean.TRUE |
456 |
|
: java.lang.Boolean.FALSE); |
457 |
|
} |
458 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
459 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
460 |
|
throws IllegalStateException, IllegalArgumentException |
461 |
|
{ |
462 |
12 |
try |
463 |
|
{ |
464 |
12 |
Tree target = (Tree) object; |
465 |
|
|
466 |
12 |
if (value == null) |
467 |
|
{ |
468 |
0 |
target.deleteFitToWindow(); |
469 |
0 |
return; |
470 |
|
} |
471 |
12 |
target.setFitToWindow(((java.lang.Boolean) value).booleanValue()); |
472 |
|
} catch (java.lang.Exception ex) |
473 |
|
{ |
474 |
0 |
throw new IllegalStateException(ex.toString()); |
475 |
|
} |
476 |
|
} |
477 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
478 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
479 |
|
{ |
480 |
0 |
return null; |
481 |
|
} |
482 |
|
}; |
483 |
16 |
desc.setHandler(handler); |
484 |
16 |
desc.setMultivalued(false); |
485 |
16 |
addFieldDescriptor(desc); |
486 |
|
|
487 |
|
|
488 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
489 |
|
{ |
490 |
16 |
org.exolab.castor.xml.validators.BooleanValidator typeValidator; |
491 |
16 |
typeValidator = new org.exolab.castor.xml.validators.BooleanValidator(); |
492 |
16 |
fieldValidator.setValidator(typeValidator); |
493 |
|
} |
494 |
16 |
desc.setValidator(fieldValidator); |
495 |
|
|
496 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
497 |
|
java.lang.Boolean.TYPE, "_currentTree", "currentTree", |
498 |
|
org.exolab.castor.xml.NodeType.Attribute); |
499 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
500 |
|
{ |
|
|
| 62.5% |
Uncovered Elements: 3 (8) |
Complexity: 3 |
Complexity Density: 0.75 |
|
501 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
502 |
|
throws IllegalStateException |
503 |
|
{ |
504 |
4 |
Tree target = (Tree) object; |
505 |
4 |
if (!target.hasCurrentTree()) |
506 |
|
{ |
507 |
0 |
return null; |
508 |
|
} |
509 |
4 |
return (target.getCurrentTree() ? java.lang.Boolean.TRUE |
510 |
|
: java.lang.Boolean.FALSE); |
511 |
|
} |
512 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
513 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
514 |
|
throws IllegalStateException, IllegalArgumentException |
515 |
|
{ |
516 |
12 |
try |
517 |
|
{ |
518 |
12 |
Tree target = (Tree) object; |
519 |
|
|
520 |
12 |
if (value == null) |
521 |
|
{ |
522 |
0 |
target.deleteCurrentTree(); |
523 |
0 |
return; |
524 |
|
} |
525 |
12 |
target.setCurrentTree(((java.lang.Boolean) value).booleanValue()); |
526 |
|
} catch (java.lang.Exception ex) |
527 |
|
{ |
528 |
0 |
throw new IllegalStateException(ex.toString()); |
529 |
|
} |
530 |
|
} |
531 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
532 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
533 |
|
{ |
534 |
0 |
return null; |
535 |
|
} |
536 |
|
}; |
537 |
16 |
desc.setHandler(handler); |
538 |
16 |
desc.setMultivalued(false); |
539 |
16 |
addFieldDescriptor(desc); |
540 |
|
|
541 |
|
|
542 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
543 |
|
{ |
544 |
16 |
org.exolab.castor.xml.validators.BooleanValidator typeValidator; |
545 |
16 |
typeValidator = new org.exolab.castor.xml.validators.BooleanValidator(); |
546 |
16 |
fieldValidator.setValidator(typeValidator); |
547 |
|
} |
548 |
16 |
desc.setValidator(fieldValidator); |
549 |
|
|
550 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
551 |
|
java.lang.String.class, "_id", "id", |
552 |
|
org.exolab.castor.xml.NodeType.Attribute); |
553 |
16 |
super.setIdentity(desc); |
554 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
555 |
|
{ |
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
556 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
557 |
|
throws IllegalStateException |
558 |
|
{ |
559 |
4 |
Tree target = (Tree) object; |
560 |
4 |
return target.getId(); |
561 |
|
} |
562 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
563 |
0 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
564 |
|
throws IllegalStateException, IllegalArgumentException |
565 |
|
{ |
566 |
0 |
try |
567 |
|
{ |
568 |
0 |
Tree target = (Tree) object; |
569 |
0 |
target.setId((java.lang.String) value); |
570 |
|
} catch (java.lang.Exception ex) |
571 |
|
{ |
572 |
0 |
throw new IllegalStateException(ex.toString()); |
573 |
|
} |
574 |
|
} |
575 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
576 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
577 |
|
{ |
578 |
0 |
return new java.lang.String(); |
579 |
|
} |
580 |
|
}; |
581 |
16 |
desc.setHandler(handler); |
582 |
16 |
desc.setMultivalued(false); |
583 |
16 |
addFieldDescriptor(desc); |
584 |
|
|
585 |
|
|
586 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
587 |
|
{ |
588 |
16 |
org.exolab.castor.xml.validators.IdValidator typeValidator; |
589 |
16 |
typeValidator = new org.exolab.castor.xml.validators.IdValidator(); |
590 |
16 |
fieldValidator.setValidator(typeValidator); |
591 |
|
} |
592 |
16 |
desc.setValidator(fieldValidator); |
593 |
|
|
594 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
595 |
|
java.lang.Integer.TYPE, "_width", "width", |
596 |
|
org.exolab.castor.xml.NodeType.Attribute); |
597 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
598 |
|
{ |
|
|
| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
599 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
600 |
|
throws IllegalStateException |
601 |
|
{ |
602 |
4 |
Tree target = (Tree) object; |
603 |
4 |
if (!target.hasWidth()) |
604 |
|
{ |
605 |
0 |
return null; |
606 |
|
} |
607 |
4 |
return new java.lang.Integer(target.getWidth()); |
608 |
|
} |
609 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
610 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
611 |
|
throws IllegalStateException, IllegalArgumentException |
612 |
|
{ |
613 |
12 |
try |
614 |
|
{ |
615 |
12 |
Tree target = (Tree) object; |
616 |
|
|
617 |
12 |
if (value == null) |
618 |
|
{ |
619 |
0 |
target.deleteWidth(); |
620 |
0 |
return; |
621 |
|
} |
622 |
12 |
target.setWidth(((java.lang.Integer) value).intValue()); |
623 |
|
} catch (java.lang.Exception ex) |
624 |
|
{ |
625 |
0 |
throw new IllegalStateException(ex.toString()); |
626 |
|
} |
627 |
|
} |
628 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
629 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
630 |
|
{ |
631 |
0 |
return null; |
632 |
|
} |
633 |
|
}; |
634 |
16 |
desc.setHandler(handler); |
635 |
16 |
desc.setMultivalued(false); |
636 |
16 |
addFieldDescriptor(desc); |
637 |
|
|
638 |
|
|
639 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
640 |
|
{ |
641 |
16 |
org.exolab.castor.xml.validators.IntValidator typeValidator; |
642 |
16 |
typeValidator = new org.exolab.castor.xml.validators.IntValidator(); |
643 |
16 |
fieldValidator.setValidator(typeValidator); |
644 |
16 |
typeValidator.setMinInclusive(-2147483648); |
645 |
16 |
typeValidator.setMaxInclusive(2147483647); |
646 |
|
} |
647 |
16 |
desc.setValidator(fieldValidator); |
648 |
|
|
649 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
650 |
|
java.lang.Integer.TYPE, "_height", "height", |
651 |
|
org.exolab.castor.xml.NodeType.Attribute); |
652 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
653 |
|
{ |
|
|
| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
654 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
655 |
|
throws IllegalStateException |
656 |
|
{ |
657 |
4 |
Tree target = (Tree) object; |
658 |
4 |
if (!target.hasHeight()) |
659 |
|
{ |
660 |
0 |
return null; |
661 |
|
} |
662 |
4 |
return new java.lang.Integer(target.getHeight()); |
663 |
|
} |
664 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
665 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
666 |
|
throws IllegalStateException, IllegalArgumentException |
667 |
|
{ |
668 |
12 |
try |
669 |
|
{ |
670 |
12 |
Tree target = (Tree) object; |
671 |
|
|
672 |
12 |
if (value == null) |
673 |
|
{ |
674 |
0 |
target.deleteHeight(); |
675 |
0 |
return; |
676 |
|
} |
677 |
12 |
target.setHeight(((java.lang.Integer) value).intValue()); |
678 |
|
} catch (java.lang.Exception ex) |
679 |
|
{ |
680 |
0 |
throw new IllegalStateException(ex.toString()); |
681 |
|
} |
682 |
|
} |
683 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
684 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
685 |
|
{ |
686 |
0 |
return null; |
687 |
|
} |
688 |
|
}; |
689 |
16 |
desc.setHandler(handler); |
690 |
16 |
desc.setMultivalued(false); |
691 |
16 |
addFieldDescriptor(desc); |
692 |
|
|
693 |
|
|
694 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
695 |
|
{ |
696 |
16 |
org.exolab.castor.xml.validators.IntValidator typeValidator; |
697 |
16 |
typeValidator = new org.exolab.castor.xml.validators.IntValidator(); |
698 |
16 |
fieldValidator.setValidator(typeValidator); |
699 |
16 |
typeValidator.setMinInclusive(-2147483648); |
700 |
16 |
typeValidator.setMaxInclusive(2147483647); |
701 |
|
} |
702 |
16 |
desc.setValidator(fieldValidator); |
703 |
|
|
704 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
705 |
|
java.lang.Integer.TYPE, "_xpos", "xpos", |
706 |
|
org.exolab.castor.xml.NodeType.Attribute); |
707 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
708 |
|
{ |
|
|
| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
709 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
710 |
|
throws IllegalStateException |
711 |
|
{ |
712 |
4 |
Tree target = (Tree) object; |
713 |
4 |
if (!target.hasXpos()) |
714 |
|
{ |
715 |
0 |
return null; |
716 |
|
} |
717 |
4 |
return new java.lang.Integer(target.getXpos()); |
718 |
|
} |
719 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
720 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
721 |
|
throws IllegalStateException, IllegalArgumentException |
722 |
|
{ |
723 |
12 |
try |
724 |
|
{ |
725 |
12 |
Tree target = (Tree) object; |
726 |
|
|
727 |
12 |
if (value == null) |
728 |
|
{ |
729 |
0 |
target.deleteXpos(); |
730 |
0 |
return; |
731 |
|
} |
732 |
12 |
target.setXpos(((java.lang.Integer) value).intValue()); |
733 |
|
} catch (java.lang.Exception ex) |
734 |
|
{ |
735 |
0 |
throw new IllegalStateException(ex.toString()); |
736 |
|
} |
737 |
|
} |
738 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
739 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
740 |
|
{ |
741 |
0 |
return null; |
742 |
|
} |
743 |
|
}; |
744 |
16 |
desc.setHandler(handler); |
745 |
16 |
desc.setMultivalued(false); |
746 |
16 |
addFieldDescriptor(desc); |
747 |
|
|
748 |
|
|
749 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
750 |
|
{ |
751 |
16 |
org.exolab.castor.xml.validators.IntValidator typeValidator; |
752 |
16 |
typeValidator = new org.exolab.castor.xml.validators.IntValidator(); |
753 |
16 |
fieldValidator.setValidator(typeValidator); |
754 |
16 |
typeValidator.setMinInclusive(-2147483648); |
755 |
16 |
typeValidator.setMaxInclusive(2147483647); |
756 |
|
} |
757 |
16 |
desc.setValidator(fieldValidator); |
758 |
|
|
759 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
760 |
|
java.lang.Integer.TYPE, "_ypos", "ypos", |
761 |
|
org.exolab.castor.xml.NodeType.Attribute); |
762 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
763 |
|
{ |
|
|
| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
764 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
765 |
|
throws IllegalStateException |
766 |
|
{ |
767 |
4 |
Tree target = (Tree) object; |
768 |
4 |
if (!target.hasYpos()) |
769 |
|
{ |
770 |
0 |
return null; |
771 |
|
} |
772 |
4 |
return new java.lang.Integer(target.getYpos()); |
773 |
|
} |
774 |
|
|
|
|
| 55.6% |
Uncovered Elements: 4 (9) |
Complexity: 3 |
Complexity Density: 0.43 |
|
775 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
776 |
|
throws IllegalStateException, IllegalArgumentException |
777 |
|
{ |
778 |
12 |
try |
779 |
|
{ |
780 |
12 |
Tree target = (Tree) object; |
781 |
|
|
782 |
12 |
if (value == null) |
783 |
|
{ |
784 |
0 |
target.deleteYpos(); |
785 |
0 |
return; |
786 |
|
} |
787 |
12 |
target.setYpos(((java.lang.Integer) value).intValue()); |
788 |
|
} catch (java.lang.Exception ex) |
789 |
|
{ |
790 |
0 |
throw new IllegalStateException(ex.toString()); |
791 |
|
} |
792 |
|
} |
793 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
794 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
795 |
|
{ |
796 |
0 |
return null; |
797 |
|
} |
798 |
|
}; |
799 |
16 |
desc.setHandler(handler); |
800 |
16 |
desc.setMultivalued(false); |
801 |
16 |
addFieldDescriptor(desc); |
802 |
|
|
803 |
|
|
804 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
805 |
|
{ |
806 |
16 |
org.exolab.castor.xml.validators.IntValidator typeValidator; |
807 |
16 |
typeValidator = new org.exolab.castor.xml.validators.IntValidator(); |
808 |
16 |
fieldValidator.setValidator(typeValidator); |
809 |
16 |
typeValidator.setMinInclusive(-2147483648); |
810 |
16 |
typeValidator.setMaxInclusive(2147483647); |
811 |
|
} |
812 |
16 |
desc.setValidator(fieldValidator); |
813 |
|
|
814 |
|
|
815 |
|
|
816 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
817 |
|
java.lang.String.class, "_title", "title", |
818 |
|
org.exolab.castor.xml.NodeType.Element); |
819 |
16 |
desc.setImmutable(true); |
820 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
821 |
|
{ |
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
822 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
823 |
|
throws IllegalStateException |
824 |
|
{ |
825 |
4 |
Tree target = (Tree) object; |
826 |
4 |
return target.getTitle(); |
827 |
|
} |
828 |
|
|
|
|
| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
829 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
830 |
|
throws IllegalStateException, IllegalArgumentException |
831 |
|
{ |
832 |
12 |
try |
833 |
|
{ |
834 |
12 |
Tree target = (Tree) object; |
835 |
12 |
target.setTitle((java.lang.String) value); |
836 |
|
} catch (java.lang.Exception ex) |
837 |
|
{ |
838 |
0 |
throw new IllegalStateException(ex.toString()); |
839 |
|
} |
840 |
|
} |
841 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
842 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
843 |
|
{ |
844 |
0 |
return null; |
845 |
|
} |
846 |
|
}; |
847 |
16 |
desc.setHandler(handler); |
848 |
16 |
desc.setNameSpaceURI("www.jalview.org"); |
849 |
16 |
desc.setMultivalued(false); |
850 |
16 |
addFieldDescriptor(desc); |
851 |
|
|
852 |
|
|
853 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
854 |
|
{ |
855 |
16 |
org.exolab.castor.xml.validators.StringValidator typeValidator; |
856 |
16 |
typeValidator = new org.exolab.castor.xml.validators.StringValidator(); |
857 |
16 |
fieldValidator.setValidator(typeValidator); |
858 |
16 |
typeValidator.setWhiteSpace("preserve"); |
859 |
|
} |
860 |
16 |
desc.setValidator(fieldValidator); |
861 |
|
|
862 |
16 |
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( |
863 |
|
java.lang.String.class, "_newick", "newick", |
864 |
|
org.exolab.castor.xml.NodeType.Element); |
865 |
16 |
desc.setImmutable(true); |
866 |
16 |
handler = new org.exolab.castor.xml.XMLFieldHandler() |
867 |
|
{ |
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
868 |
4 |
public java.lang.Object getValue(java.lang.Object object)... |
869 |
|
throws IllegalStateException |
870 |
|
{ |
871 |
4 |
Tree target = (Tree) object; |
872 |
4 |
return target.getNewick(); |
873 |
|
} |
874 |
|
|
|
|
| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
875 |
12 |
public void setValue(java.lang.Object object, java.lang.Object value)... |
876 |
|
throws IllegalStateException, IllegalArgumentException |
877 |
|
{ |
878 |
12 |
try |
879 |
|
{ |
880 |
12 |
Tree target = (Tree) object; |
881 |
12 |
target.setNewick((java.lang.String) value); |
882 |
|
} catch (java.lang.Exception ex) |
883 |
|
{ |
884 |
0 |
throw new IllegalStateException(ex.toString()); |
885 |
|
} |
886 |
|
} |
887 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
888 |
0 |
public java.lang.Object newInstance(java.lang.Object parent)... |
889 |
|
{ |
890 |
0 |
return null; |
891 |
|
} |
892 |
|
}; |
893 |
16 |
desc.setHandler(handler); |
894 |
16 |
desc.setNameSpaceURI("www.jalview.org"); |
895 |
16 |
desc.setMultivalued(false); |
896 |
16 |
addFieldDescriptor(desc); |
897 |
|
|
898 |
|
|
899 |
16 |
fieldValidator = new org.exolab.castor.xml.FieldValidator(); |
900 |
|
{ |
901 |
16 |
org.exolab.castor.xml.validators.StringValidator typeValidator; |
902 |
16 |
typeValidator = new org.exolab.castor.xml.validators.StringValidator(); |
903 |
16 |
fieldValidator.setValidator(typeValidator); |
904 |
16 |
typeValidator.setWhiteSpace("preserve"); |
905 |
|
} |
906 |
16 |
desc.setValidator(fieldValidator); |
907 |
|
} |
908 |
|
|
909 |
|
|
910 |
|
|
911 |
|
|
912 |
|
|
913 |
|
|
914 |
|
|
915 |
|
|
916 |
|
@return |
917 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
918 |
0 |
public org.exolab.castor.mapping.AccessMode getAccessMode()... |
919 |
|
{ |
920 |
0 |
return null; |
921 |
|
} |
922 |
|
|
923 |
|
|
924 |
|
|
925 |
|
|
926 |
|
@return |
927 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
928 |
184 |
public org.exolab.castor.mapping.FieldDescriptor getIdentity()... |
929 |
|
{ |
930 |
184 |
return super.getIdentity(); |
931 |
|
} |
932 |
|
|
933 |
|
|
934 |
|
|
935 |
|
|
936 |
|
@return |
937 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
938 |
14 |
public java.lang.Class getJavaClass()... |
939 |
|
{ |
940 |
14 |
return jalview.schemabinding.version2.Tree.class; |
941 |
|
} |
942 |
|
|
943 |
|
|
944 |
|
|
945 |
|
|
946 |
|
@return |
947 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
948 |
2 |
public java.lang.String getNameSpacePrefix()... |
949 |
|
{ |
950 |
2 |
return _nsPrefix; |
951 |
|
} |
952 |
|
|
953 |
|
|
954 |
|
|
955 |
|
|
956 |
|
@return |
957 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
958 |
0 |
public java.lang.String getNameSpaceURI()... |
959 |
|
{ |
960 |
0 |
return _nsURI; |
961 |
|
} |
962 |
|
|
963 |
|
|
964 |
|
|
965 |
|
|
966 |
|
@return |
967 |
|
|
968 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
969 |
2 |
public org.exolab.castor.xml.TypeValidator getValidator()... |
970 |
|
{ |
971 |
2 |
return this; |
972 |
|
} |
973 |
|
|
974 |
|
|
975 |
|
|
976 |
|
|
977 |
|
@return |
978 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
979 |
32 |
public java.lang.String getXMLName()... |
980 |
|
{ |
981 |
32 |
return _xmlName; |
982 |
|
} |
983 |
|
|
984 |
|
|
985 |
|
|
986 |
|
|
987 |
|
@return |
988 |
|
|
989 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
990 |
0 |
public boolean isElementDefinition()... |
991 |
|
{ |
992 |
0 |
return _elementDefinition; |
993 |
|
} |
994 |
|
|
995 |
|
} |