Getdown DEVELOP Channel
Jalview Builds
Tests: Testless build
Duration: 1182 minutes
Changes: No changes
Code changes detected
Getdown DEVELOP Installers
Jalview Builds
Tests: Testless build
Duration: 2 minutes
Changes: Who: Ben Soares <b.soares@dundee.ac.uk>
Why: Merge branch "develop" into bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly

Who: Ben Soares <b.soares@dundee.ac.uk>
Why: JAL-4125 Move confirmation of closing external viewer windows into the quit handler, and allow all to close or not in closeViewer whilst quitting.

Who: Ben Soares <b.soares@dundee.ac.uk>
Why: Merge branch "improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf" into merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064

Who: Ben Soares <b.soares@dundee.ac.uk>
Why: JAL-3416 Added logoIcon to quit (and potentially other) dialogs

Who: Ben Soares <b.soares@dundee.ac.uk>
Why: JAL-4019 Clarification of position on "X" in help text

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Manual run by Ben Soares
Getdown Plan Channel
Jalview Builds
Tests: Testless build
Duration: 50 seconds
Changes: Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-3858 fix check annotation row and column positioning in case we have been called during an annotation height change operation

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-1556 JAL-4090 colour by annotation options on annotation label popup menu

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-3858 improved contactInterval computation and added detailed test coverage for ContactGeometry - contactInterval.cStart/cEnd and pStart/pEnd are now base-0 inclusive ranges, always less than contactHeight and graphHeight - change in mapFor behaviour so cStart/cEnd and pStart/pEnd are always just one mapped range, not as many as requested to cover mapFor(pFrom,pTo)

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-3858 javadoc and slightly revised green linear shading - still not a perfect match to EBI AlphaFold

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-4090 figures in paematrix doc

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Child of JB-GDB-563
Getdown TESTING Channel
Jalview Builds
Tests: Testless build
Duration: 3 minutes
Changes: Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-4196 structure view cli tests wait using new jalview.Desktop.instance.operationsAreInProgress() returns true if any desktop windows have a progress indicator still active

Who: Ben Soares <b.soares@dundee.ac.uk>
Why: JAL-4001 Added a genuine client_id (from gtag).  Added /debug/mp/collect with response content

Who: Ben Soares <b.soares@dundee.ac.uk>
Why: JAL-4513 now re-add the SwingUtilities.invokeAndWait() with minimal sleep

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-3855 auto select clusters and fix up colouring/propagation on calculation & tree display

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-3855 JAL-4124 test checks asymmetric matrices are stored and restored correctly

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Manual run by James Procter
Getdown TESTING Installers
Jalview Builds
Tests: Testless build
Duration: < 1 second
Changes: No changes
Manual run by James Procter
Gradle build with getdown and install4j
Jalview Builds
Tests: Testless build
Duration: < 1 second
Changes: Who: Mungo Carstairs
Why: JAL-3567 adjust layout of linked feature report, unit test

Who: Ben Soares
Why: JAL-3225 some fixes to build.gradle for working in Eclipse and not always changing doc/building.html

Who: Mungo Carstairs
Why: Merge branch "feature/JAL-3551Pymol" into feature/JAL-2422ChimeraX

Who: Mungo Carstairs
Why: JAL-3624 use temp file for SIFT download in JS, correct unmarshalling

Who: Mungo Carstairs
Why: JAL-3551 concatenate colour by sequence commands for all except PyMOL

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Manual run by Ben Soares
Gradle Develop Build
Jalview Builds
Tests: 1676 passed
Duration: 15 minutes
Changes: Who: James Procter <j.procter@dundee.ac.uk>
Why: Merge branch "bug/JAL-244_interactingpngexportnotwysiwig" into develop

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-244 JAL-4090 use current IdWidth when exporting unwrapped alignment image.

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command line example

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-629 JAL-4265 JAL-4286 report the filename for the exported structure image like we do for exported alignment images
Gradle getdown release
Jalview Builds
Tests: Testless build
Duration: 5 seconds
Changes: No changes
Manual run by Ben Soares
Gradle JalviewJS Build
Jalview Builds
Tests: Testless build
Duration: 9 minutes
Changes: Who: James Procter <j.procter@dundee.ac.uk>
Why: Merge branch "bug/JAL-244_interactingpngexportnotwysiwig" into develop

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-244 JAL-4090 use current IdWidth when exporting unwrapped alignment image.

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-629 JAL-4265 JAL-4286 report the filename for the exported structure image like we do for exported alignment images

Who: James Procter <j.procter@dundee.ac.uk>
Why: JAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command line example