Create easy access JVL files/links for launching in Jalview Develop
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JIRA Issues
This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.
| Type | Key | Summary | Status | Assignee | Fix versions | Related Builds | Last Built |
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JAL-4542 | Selection of Sequences in Sequence Panel should Highlight all Corresponding Nodes in Secondary Structure Similarity Tree and select annotations in annotation panel | Closed | Renia Correya | 2.11.5.0 | 6 related builds | Last built: 2 months ago |
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JAL-4548 | showing PDB IDs and other important metadata for annotations in the alignment and tree views | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4549 | trackpad scrolling on annotation panel when structure view is open causes massive slow down | Open | James Procter | 2.12.0 | 5 related builds | Last built: 2 months ago |
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JAL-4555 | Sort by a sequence's description | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4557 | New views for a CDS/Protein alignment have a 'cDNA PID' annotation row | Closed | James Procter | 2.11.5.0, 2.12.0 | 5 related builds | Last built: 2 months ago |
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JAL-4562 | CLI ignores additional annotation files specified via --annotations | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4563 | cannot import structure via URL on command line | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4564 | Can't specify URLs via --open= | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4566 | Jalview can fail to properly import and map a structure to a sequence via its N&W aligner | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4568 | Jalview freezes when trying to export PNG or EPS from Jmol via the File->Export menu | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4570 | PAE tree always shown above the alignment view | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4583 | Incorrect sequence count in source specific secondary structure consensus | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4589 | Empty row in annotation panel shown when alignment first imported | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4590 | String.isBlank() not available under Java 8 | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4591 | Web URLs that do not provide content or encoding headers are not readable | Closed | James Procter | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4594 | Secondary structure consensus appears to overlap with other annotation | Resolved | James Procter | 2.11.5.0, 2.12.0, 2.11.5.1 | 8 related builds | Last built: 2 months ago |
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JAL-4595 | option to show or hide all 'temperature factor' like annotation tracks | Open | James Procter | 5 related builds | Last built: 2 months ago | |
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JAL-623 | pdb structure imported from paste to alignment not loaded into new Jmol window | Open | James Procter | 5 related builds | Last built: 2 months ago | |
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JAL-629 | create sequence/structure associations and add associated data via command line | Closed | Ben Soares | 2.11.3.0, 2.11.3, 2.11.5.0 | 7 related builds | Last built: 2 months ago |