Create easy access JVL files/links for launching in Jalview Develop
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JIRA Issues
This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.
| Type | Key | Summary | Status | Assignee | Fix versions | Related Builds | Last Built |
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JAL-4477 | Jalview 2.11.4 installer doesn't work for usernames that include non-latin characters | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4482 | Gradle linkCheck task fails when whatsNew.html is not generated in non-CHANNEL builds | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4485 | Newer ChimeraX not found automatically on Windows or macOS desktops | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4486 | secondary structure annotation not mapped correctly to sequence for some structures | Open | Unassigned | 2.12, 2.11.5 | 5 related builds | Last built: 2 months ago |
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JAL-4487 | On Windows CLI, globbed input filenames with file separators might fail | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4491 | Could not obtain issue details from JIRA | Last built: 2 months ago | ||||
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JAL-4500 | Update flatlaf for more OS visual integration | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4503 | Location of structure viewer not faithfully saved and restored in project | Closed | James Procter | 2.11.5.0, 2.12.0 | 6 related builds | Last built: 2 months ago |
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JAL-4504 | Jalview does not update the screen leading to the app becoming completely unusable | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4505 | install4j installation wizard looks bad in dark mode | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4507 | Exported Consensus annotation then loads (Load Features/Annotations) as a Pfam file sequence onto the alignment | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4509 | Assign perceptually distinct colours for secondary structure providers | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4511 | Jalview 2.11.4.1 doesn't include full platform details in console output | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4513 | Consistent colours assigned to groups generated when subdividing tree | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4515 | Add Coloured Backgrounds for Grouped Nodes in Similarity Tree | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4516 | Resizing an alignment window from the top can completely obscure sequences and annotation divider | Open | Unassigned | 5 related builds | Last built: 2 months ago | |
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JAL-4517 | store and restore trees linked to annotation rows in Jalview projects | Closed | Renia Correya | 2.11.5.0 | 7 related builds | Last built: 2 months ago |
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JAL-4518 | sort and colour annotation rows in alignment view according to tree ordering | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4527 | Allow secondary structure rows with 'PROVIDER' metadata to be exported and imported as Jalview annotations file | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4528 | Allow calculation of annotation track based trees involving just one or two sequences | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4530 | Add an Applescript .app to the DMG to allow easy installation to ~/Applications folder and optionally add Jalview to the Dock | Closed | Ben Soares | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4531 | Release 2.11.5.0 | Open | James Procter | 2.11.5.0 | 6 related builds | Last built: 2 months ago |
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JAL-4537 | Tree node labels are grey when a tree is first created then black when redrawn | Closed | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 2 months ago |
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JAL-4539 | find causes stack overflow | Closed | Renia Correya | 2.11.5.1 | 5 related builds | Last built: 2 months ago |
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JAL-4541 | Slight increase in robustness of analytics from Jalview Desktop | Being tested | James Procter | 2.11.5.0, 2.11.5 | 5 related builds | Last built: 2 months ago |