None
Build files
Jalview Builds - Gradle Develop Build - bug-JAL-4603_export_svg_files_missing_part_of_sequence - Clover and Tests / build / reports / clover / jalview / io
| File | Size | Date | |
|---|---|---|---|
|
cache | 01 Dec 2025, 3:45:32 PM | |
|
|
exceptions | 01 Dec 2025, 3:45:16 PM | |
|
|
gff | 01 Dec 2025, 3:45:32 PM | |
|
|
packed | 01 Dec 2025, 3:45:51 PM | |
|
|
vamsas | 01 Dec 2025, 3:45:10 PM | |
|
|
vcf | 01 Dec 2025, 3:45:31 PM | |
| A3mFile.html | 58 kB | 01 Dec 2025, 3:45:12 PM | |
| A3mFile.js | 0.9 kB | 01 Dec 2025, 3:45:12 PM | |
| AMSAFile.html | 80 kB | 01 Dec 2025, 3:45:11 PM | |
| AMSAFile.js | 1 kB | 01 Dec 2025, 3:45:11 PM | |
| AlignFile.html | 706 kB | 01 Dec 2025, 3:45:12 PM | |
| AlignFile.js | 223 kB | 01 Dec 2025, 3:45:12 PM | |
| AlignmentFileReaderI.html | 36 kB | 01 Dec 2025, 3:45:11 PM | |
| AlignmentFileReaderI.js | 0.6 kB | 01 Dec 2025, 3:45:11 PM | |
| AlignmentFileWriterI.html | 34 kB | 01 Dec 2025, 3:45:12 PM | |
| AlignmentFileWriterI.js | 0.6 kB | 01 Dec 2025, 3:45:12 PM | |
| AlignmentProperties.html | 94 kB | 01 Dec 2025, 3:45:11 PM | |
| AlignmentProperties.js | 1 kB | 01 Dec 2025, 3:45:11 PM | |
| AnnotatedPDBFileInputTest.html | 166 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotatedPDBFileInputTest.js | 3 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotatedPDBFileInputTest_checkAnnotationWiring_oa.html | 25 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotatedPDBFileInputTest_checkNoDuplicates_fx.html | 14 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotatedPDBFileInputTest_checkPDBSequenceFeatures_mj.html | 24 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotatedPDBFileInputTest_testJalviewProjectRelocationAnnotation_72.html | 165 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotationExporterTest.html | 59 kB | 01 Dec 2025, 3:45:13 PM | |
| AnnotationExporterTest.js | 1 kB | 01 Dec 2025, 3:45:13 PM | |
| AnnotationExporterTest_testAnnotationExportAsCSV_19j.html | 114 kB | 01 Dec 2025, 3:45:13 PM | |
| AnnotationFile.html | 1.01 MB | 01 Dec 2025, 3:45:11 PM | |
| AnnotationFile.js | 60 kB | 01 Dec 2025, 3:45:11 PM | |
| AnnotationFileIOTest.html | 241 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotationFileIOTest.js | 5 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotationFileIOTest_exampleAnnotationFileIO_3w.html | 40 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotationFileIOTest_testAnnotateAlignmentView_6d.html | 106 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotationFileIOTest_testCalcIdRestore_91.html | 105 kB | 01 Dec 2025, 3:45:15 PM | |
| AnnotationFileIOTest_testProviderRestore_5z.html | 114 kB | 01 Dec 2025, 3:45:15 PM | |
| AppletFormatAdapter.html | 680 kB | 01 Dec 2025, 3:45:11 PM | |
| AppletFormatAdapter.js | 129 kB | 01 Dec 2025, 3:45:11 PM | |
| BLCFile.html | 153 kB | 01 Dec 2025, 3:45:12 PM | |
| BLCFile.js | 3 kB | 01 Dec 2025, 3:45:12 PM | |
| BackupFilenameFilter.html | 68 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFilenameFilter.js | 3 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFilenameParts.html | 129 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFilenameParts.js | 7 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFiles.html | 599 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFiles.js | 58 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFilesPresetEntry.html | 155 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFilesPresetEntry.js | 15 kB | 01 Dec 2025, 3:45:11 PM | |
| BackupFilesTest.html | 296 kB | 01 Dec 2025, 3:45:15 PM | |
| BackupFilesTest.js | 10 kB | 01 Dec 2025, 3:45:15 PM | |
| BackupFilesTest_backupsEnabledNoRollMaxTest_hm.html | 114 kB | 01 Dec 2025, 3:45:15 PM | |
| BackupFilesTest_backupsEnabledReverseRollMaxTest_1cd.html | 113 kB | 01 Dec 2025, 3:45:15 PM | |
| BackupFilesTest_backupsEnabledRollMaxTest_p9.html | 113 kB | 01 Dec 2025, 3:45:15 PM | |
| BackupFilesTest_backupsEnabledSingleFileBackupTest_148.html | 113 kB | 01 Dec 2025, 3:45:15 PM | |
| BackupFilesTest_noBackupsEnabledTest_1bh.html | 101 kB | 01 Dec 2025, 3:45:15 PM | |
| BioJsHTMLOutput.html | 278 kB | 01 Dec 2025, 3:45:12 PM | |
| BioJsHTMLOutput.js | 73 kB | 01 Dec 2025, 3:45:12 PM | |
| BioJsHTMLOutputTest.html | 107 kB | 01 Dec 2025, 3:45:13 PM | |
| BioJsHTMLOutputTest.js | 2 kB | 01 Dec 2025, 3:45:13 PM | |
| BioJsHTMLOutputTest_expectedNullPointerException_k3.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| BioJsHTMLOutputTest_getBioJsMSAVersions_ot.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| BioJsHTMLOutputTest_getJalviewAlignmentAsJsonString_cl.html | 23 kB | 01 Dec 2025, 3:45:13 PM | |
| ClustalFile.html | 158 kB | 01 Dec 2025, 3:45:12 PM | |
| ClustalFile.js | 6 kB | 01 Dec 2025, 3:45:12 PM | |
| ClustalFileTest.html | 65 kB | 01 Dec 2025, 3:45:15 PM | |
| ClustalFileTest.js | 1 kB | 01 Dec 2025, 3:45:15 PM | |
| ClustalFileTest_testParse_noNumbering_55.html | 14 kB | 01 Dec 2025, 3:45:15 PM | |
| ClustalFileTest_testParse_withNumbering_1d1.html | 14 kB | 01 Dec 2025, 3:45:15 PM | |
| CrossRef2xmlTests.html | 327 kB | 01 Dec 2025, 3:45:12 PM | |
| CrossRef2xmlTests.js | 4 kB | 01 Dec 2025, 3:45:12 PM | |
| CrossRef2xmlTests_openCrossrefsForEnsemblTwice_4x.html | 178 kB | 01 Dec 2025, 3:45:12 PM | |
| DBRefFile.html | 43 kB | 01 Dec 2025, 3:45:12 PM | |
| DBRefFile.js | 0.6 kB | 01 Dec 2025, 3:45:12 PM | |
| DataSourceType.html | 269 kB | 01 Dec 2025, 3:45:11 PM | |
| DataSourceType.js | 25 kB | 01 Dec 2025, 3:45:11 PM | |
| EMBLLikeFlatFile.html | 429 kB | 01 Dec 2025, 3:45:11 PM | |
| EMBLLikeFlatFile.js | 17 kB | 01 Dec 2025, 3:45:11 PM | |
| EmblFlatFile.html | 134 kB | 01 Dec 2025, 3:45:11 PM | |
| EmblFlatFile.js | 4 kB | 01 Dec 2025, 3:45:11 PM | |
| EmblFlatFileTest.html | 229 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest.js | 5 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest_testAdjustForProteinLength_1dt.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest_testParseToRNA_rm.html | 21 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest_testParse_199.html | 20 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest_testParse_codonStartNot1_8o.html | 7 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest_testParse_noUniprotXref_17y.html | 20 kB | 01 Dec 2025, 3:45:14 PM | |
| EmblFlatFileTest_testRemoveQuotes_120.html | 8 kB | 01 Dec 2025, 3:45:14 PM | |
| FastaFile.html | 428 kB | 01 Dec 2025, 3:45:12 PM | |
| FastaFile.js | 112 kB | 01 Dec 2025, 3:45:12 PM | |
| FeaturesFile.html | 765 kB | 01 Dec 2025, 3:45:11 PM | |
| FeaturesFile.js | 27 kB | 01 Dec 2025, 3:45:11 PM | |
| FeaturesFileTest.html | 522 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest.js | 13 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_readGff3File_by.html | 36 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_simpleGff3FileClass_98.html | 35 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_simpleGff3FileLoader_179.html | 125 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_simpleGff3RelaxedIdMatching_75.html | 35 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testOutputFeatureFilters_yf.html | 21 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testParseFilters_147.html | 14 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testParse_b6.html | 95 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testParse_jalviewFeaturesOnly_yz.html | 100 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testParse_mixedJalviewGff_l9.html | 115 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testParse_pureGff3_s6.html | 97 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testPrintGffFormat_6g.html | 110 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testPrintGffFormat_withFilters_89.html | 112 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testPrintJalviewFormat_lz.html | 109 kB | 01 Dec 2025, 3:45:14 PM | |
| FeaturesFileTest_testPrintJalviewFormat_withFilters_oo.html | 113 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormat.html | 819 kB | 01 Dec 2025, 3:45:11 PM | |
| FileFormat.js | 82 kB | 01 Dec 2025, 3:45:11 PM | |
| FileFormatException.html | 58 kB | 01 Dec 2025, 3:45:12 PM | |
| FileFormatException.js | 2 kB | 01 Dec 2025, 3:45:12 PM | |
| FileFormatI.html | 46 kB | 01 Dec 2025, 3:45:11 PM | |
| FileFormatI.js | 0.7 kB | 01 Dec 2025, 3:45:11 PM | |
| FileFormats.html | 469 kB | 01 Dec 2025, 3:45:11 PM | |
| FileFormats.js | 72 kB | 01 Dec 2025, 3:45:11 PM | |
| FileFormatsTest.html | 137 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest.js | 3 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testDeregisterFileFormat_t6.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testForName_18v.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testGetFormats_vv.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testGetReadableFormats_dv.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testGetWritableFormats_ks.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testIsIdentifiable_17.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileFormatsTest_testRegisterFileFormat_zm.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| FileIOTester.html | 130 kB | 01 Dec 2025, 3:45:14 PM | |
| FileIOTester.js | 3 kB | 01 Dec 2025, 3:45:14 PM | |
| FileIOTester_testGzipIo_104.html | 12 kB | 01 Dec 2025, 3:45:15 PM | |
| FileIOTester_testGziplocalFileIO_84.html | 11 kB | 01 Dec 2025, 3:45:15 PM | |
| FileIOTester_testIsGzipInputStream_1.html | 12 kB | 01 Dec 2025, 3:45:14 PM | |
| FileIOTester_testNonGzipURLIO_7g.html | 12 kB | 01 Dec 2025, 3:45:15 PM | |
| FileIOTester_testNonGziplocalFileIO_wl.html | 11 kB | 01 Dec 2025, 3:45:15 PM | |
| FileIOTester_testStarsInFasta1_14u.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| FileIOTester_testStarsInFasta2_uz.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| FileLoader.html | 601 kB | 01 Dec 2025, 3:45:12 PM | |
| FileLoader.js | 250 kB | 01 Dec 2025, 3:45:12 PM | |
| FileLoaderTest.html | 37 kB | 01 Dec 2025, 3:45:15 PM | |
| FileLoaderTest.js | 0.6 kB | 01 Dec 2025, 3:45:15 PM | |
| FileParse.html | 926 kB | 01 Dec 2025, 3:45:11 PM | |
| FileParse.js | 338 kB | 01 Dec 2025, 3:45:11 PM | |
| FormatAdapter.html | 458 kB | 01 Dec 2025, 3:45:11 PM | |
| FormatAdapter.js | 56 kB | 01 Dec 2025, 3:45:11 PM | |
| FormatAdapterTest.html | 112 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest.js | 5 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_11e.html | 22 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_11v.html | 21 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_12f.html | 23 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_14q.html | 23 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_183.html | 21 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_30.html | 21 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_8i.html | 22 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_g.html | 23 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_i4.html | 42 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_lp.html | 32 kB | 01 Dec 2025, 3:45:13 PM | |
| FormatAdapterTest_testRoundTrip_s3.html | 22 kB | 01 Dec 2025, 3:45:13 PM | |
| GenBankFile.html | 121 kB | 01 Dec 2025, 3:45:11 PM | |
| GenBankFile.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| GenBankFileTest.html | 132 kB | 01 Dec 2025, 3:45:13 PM | |
| GenBankFileTest.js | 3 kB | 01 Dec 2025, 3:45:13 PM | |
| GenBankFileTest_testParse_ad.html | 20 kB | 01 Dec 2025, 3:45:13 PM | |
| HTMLOutput.html | 197 kB | 01 Dec 2025, 3:45:12 PM | |
| HTMLOutput.js | 2 kB | 01 Dec 2025, 3:45:12 PM | |
| HtmlFile.html | 132 kB | 01 Dec 2025, 3:45:11 PM | |
| HtmlFile.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| HtmlFileTest.html | 39 kB | 01 Dec 2025, 3:45:14 PM | |
| HtmlFileTest.js | 0.6 kB | 01 Dec 2025, 3:45:14 PM | |
| HtmlSvgOutput.html | 173 kB | 01 Dec 2025, 3:45:11 PM | |
| HtmlSvgOutput.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| IdentifyFile.html | 590 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFile.js | 237 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest.html | 149 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest.js | 5 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_10d.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_10q.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_11f.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_13.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_16u.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_17u.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_19d.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_1a3.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_1dg.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_1dl.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_1e.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_1q.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_2r.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_5j.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_7f.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_9z.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_aq.html | 12 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_cy.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_featureFile_pl.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_i2.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_q0.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testIdentify_qb.html | 11 kB | 01 Dec 2025, 3:45:12 PM | |
| IdentifyFileTest_testLooksLikeFeatureData_oi.html | 8 kB | 01 Dec 2025, 3:45:12 PM | |
| InputStreamParser.html | 44 kB | 01 Dec 2025, 3:45:12 PM | |
| InputStreamParser.js | 0.6 kB | 01 Dec 2025, 3:45:12 PM | |
| IntKeyStringValueEntry.html | 44 kB | 01 Dec 2025, 3:45:12 PM | |
| IntKeyStringValueEntry.js | 0.7 kB | 01 Dec 2025, 3:45:12 PM | |
| JPredFile.html | 220 kB | 01 Dec 2025, 3:45:12 PM | |
| JPredFile.js | 2 kB | 01 Dec 2025, 3:45:12 PM | |
| JSONFile.html | 508 kB | 01 Dec 2025, 3:45:11 PM | |
| JSONFile.js | 14 kB | 01 Dec 2025, 3:45:11 PM | |
| JSONFileTest.html | 364 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest.js | 6 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_colorSchemeTest_58.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_hiddenColsTest_cd.html | 10 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_hiddenSeqsTest_10u.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_isShowSeqFeaturesSet_v.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_roundTripTest_r3.html | 7 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_testAnnotationParsed_dt.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_testBioJSONRoundTripWithColourSchemeNone_kr.html | 118 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_testGrpParsed_1c2.html | 10 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_testGrpParsed_colourNone_ox.html | 110 kB | 01 Dec 2025, 3:45:13 PM | |
| JSONFileTest_testSeqParsed_181.html | 11 kB | 01 Dec 2025, 3:45:13 PM | |
| Jalview2xmlBase.html | 78 kB | 01 Dec 2025, 3:45:13 PM | |
| Jalview2xmlBase.js | 1 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewExportPropertiesTests.html | 71 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewExportPropertiesTests.js | 1 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewExportPropertiesTests_testImportExportPeriodGaps_p0.html | 120 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewFileChooser.html | 646 kB | 01 Dec 2025, 3:45:11 PM | |
| JalviewFileChooser.js | 141 kB | 01 Dec 2025, 3:45:11 PM | |
| JalviewFileChooserTest.html | 111 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest.js | 7 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_123.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_12a.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_144.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1b7.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_1cv.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_42.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_5t.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_8s.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_ak.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_bu.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_c0.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_c3.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_iy.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_j9.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_lu.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_n9.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_rw.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_so.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_tf.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_up.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_vx.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_yn.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileChooserTest_checkDefaultSaveFormat_z8.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| JalviewFileFilter.html | 246 kB | 01 Dec 2025, 3:45:12 PM | |
| JalviewFileFilter.js | 65 kB | 01 Dec 2025, 3:45:12 PM | |
| JalviewFileView.html | 115 kB | 01 Dec 2025, 3:45:11 PM | |
| JalviewFileView.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| JalviewFileViewTest.html | 90 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewFileViewTest.js | 2 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewFileViewTest_testGetExtension_p7.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewFileViewTest_testGetImageIcon_14e.html | 9 kB | 01 Dec 2025, 3:45:13 PM | |
| JalviewFileViewTest_testGetTypeDescription_19n.html | 10 kB | 01 Dec 2025, 3:45:13 PM | |
| JnetAnnotationMaker.html | 126 kB | 01 Dec 2025, 3:45:11 PM | |
| JnetAnnotationMaker.js | 1 kB | 01 Dec 2025, 3:45:11 PM | |
| MSFfile.html | 212 kB | 01 Dec 2025, 3:45:12 PM | |
| MSFfile.js | 5 kB | 01 Dec 2025, 3:45:12 PM | |
| ModellerDescription.html | 236 kB | 01 Dec 2025, 3:45:11 PM | |
| ModellerDescription.js | 3 kB | 01 Dec 2025, 3:45:11 PM | |
| NewickFile.html | 529 kB | 01 Dec 2025, 3:45:11 PM | |
| NewickFile.js | 39 kB | 01 Dec 2025, 3:45:11 PM | |
| NewickFileTests.html | 121 kB | 01 Dec 2025, 3:45:13 PM | |
| NewickFileTests.js | 3 kB | 01 Dec 2025, 3:45:13 PM | |
| NewickFileTests_testTreeIO_6e.html | 33 kB | 01 Dec 2025, 3:45:13 PM | |
| NewickFileTests_testTreeIO_dl.html | 35 kB | 01 Dec 2025, 3:45:13 PM | |
| NewickFileTests_testTreeIO_dz.html | 34 kB | 01 Dec 2025, 3:45:13 PM | |
| PContactPredictionFile.html | 101 kB | 01 Dec 2025, 3:45:11 PM | |
| PContactPredictionFile.js | 1 kB | 01 Dec 2025, 3:45:11 PM | |
| PDBFeatureSettings.html | 121 kB | 01 Dec 2025, 3:45:11 PM | |
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| PIRFile.html | 120 kB | 01 Dec 2025, 3:45:11 PM | |
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| PfamFile.html | 131 kB | 01 Dec 2025, 3:45:11 PM | |
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| PfamFormatInputTest.html | 56 kB | 01 Dec 2025, 3:45:15 PM | |
| PfamFormatInputTest.js | 1.0 kB | 01 Dec 2025, 3:45:15 PM | |
| PfamFormatInputTest_testPfamFormatNoLimits_45.html | 19 kB | 01 Dec 2025, 3:45:15 PM | |
| PfamFormatInputTest_testPfamFormatValidLimits_o4.html | 19 kB | 01 Dec 2025, 3:45:15 PM | |
| PhylipFile.html | 176 kB | 01 Dec 2025, 3:45:11 PM | |
| PhylipFile.js | 6 kB | 01 Dec 2025, 3:45:11 PM | |
| PhylipFileTests.html | 128 kB | 01 Dec 2025, 3:45:13 PM | |
| PhylipFileTests.js | 3 kB | 01 Dec 2025, 3:45:13 PM | |
| PhylipFileTests_testInterleavedDataExtraction_1aw.html | 50 kB | 01 Dec 2025, 3:45:13 PM | |
| PhylipFileTests_testInterleavedIO_ds.html | 35 kB | 01 Dec 2025, 3:45:13 PM | |
| PhylipFileTests_testSequentialDataExtraction_2y.html | 31 kB | 01 Dec 2025, 3:45:13 PM | |
| PhylipFileTests_testSequentialIO_zw.html | 53 kB | 01 Dec 2025, 3:45:13 PM | |
| PileUpfile.html | 112 kB | 01 Dec 2025, 3:45:11 PM | |
| PileUpfile.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| RNAMLfileTest.html | 66 kB | 01 Dec 2025, 3:45:15 PM | |
| RNAMLfileTest.js | 1 kB | 01 Dec 2025, 3:45:15 PM | |
| RNAMLfileTest_testRnamlSeqImport_1as.html | 51 kB | 01 Dec 2025, 3:45:15 PM | |
| RNAMLfileTest_testRnamlToStockholmIO_ct.html | 62 kB | 01 Dec 2025, 3:45:15 PM | |
| RnamlFile.html | 145 kB | 01 Dec 2025, 3:45:11 PM | |
| RnamlFile.js | 3 kB | 01 Dec 2025, 3:45:11 PM | |
| ScoreMatrixFile.html | 266 kB | 01 Dec 2025, 3:45:12 PM | |
| ScoreMatrixFile.js | 25 kB | 01 Dec 2025, 3:45:12 PM | |
| ScoreMatrixFileTest.html | 334 kB | 01 Dec 2025, 3:45:13 PM | |
| ScoreMatrixFileTest.js | 7 kB | 01 Dec 2025, 3:45:13 PM | |
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| ScoreMatrixFileTest_testParseMatrix_aaindexFormat_67.html | 11 kB | 01 Dec 2025, 3:45:13 PM | |
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| ScoreMatrixFileTest_testParseMatrix_aaindex_mMissing_jz.html | 11 kB | 01 Dec 2025, 3:45:13 PM | |
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| ScoreMatrixFileTest_testParseMatrix_headerMissing_we.html | 11 kB | 01 Dec 2025, 3:45:13 PM | |
| ScoreMatrixFileTest_testParseMatrix_ncbiBadDelimiter_4h.html | 11 kB | 01 Dec 2025, 3:45:13 PM | |
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| ScoreMatrixFileTest_testParse_ncbiFormat_wt.html | 15 kB | 01 Dec 2025, 3:45:13 PM | |
| SequenceAnnotationReport.html | 631 kB | 01 Dec 2025, 3:45:11 PM | |
| SequenceAnnotationReport.js | 41 kB | 01 Dec 2025, 3:45:11 PM | |
| SequenceAnnotationReportTest.html | 309 kB | 01 Dec 2025, 3:45:13 PM | |
| SequenceAnnotationReportTest.js | 7 kB | 01 Dec 2025, 3:45:13 PM | |
| SequenceAnnotationReportTest_testAppendFeature_DescEqualsType_145.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_disulfideBond_pu.html | 9 kB | 01 Dec 2025, 3:45:14 PM | |
| SequenceAnnotationReportTest_testAppendFeature_noScore_ei.html | 10 kB | 01 Dec 2025, 3:45:14 PM | |
| SequenceAnnotationReportTest_testAppendFeature_status_sx.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
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| SequenceAnnotationReportTest_testAppendFeature_withScore_pb.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
| SequenceAnnotationReportTest_testAppendFeatures_longText_hz.html | 11 kB | 01 Dec 2025, 3:45:14 PM | |
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| SequenceAnnotationReportTest_testCreateSequenceAnnotationReport_withEllipsis_12z.html | 14 kB | 01 Dec 2025, 3:45:14 PM | |
| SimpleBlastFile.html | 152 kB | 01 Dec 2025, 3:45:11 PM | |
| SimpleBlastFile.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| StockholmFile.html | 675 kB | 01 Dec 2025, 3:45:11 PM | |
| StockholmFile.js | 60 kB | 01 Dec 2025, 3:45:11 PM | |
| StockholmFileTest.html | 515 kB | 01 Dec 2025, 3:45:12 PM | |
| StockholmFileTest.js | 20 kB | 01 Dec 2025, 3:45:12 PM | |
| StockholmFileTest_curlyWUSSsecondaryStructureForRNASequence_y2.html | 66 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_dbrefOutput_qw.html | 43 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_descriptionLineOutput_13d.html | 39 kB | 01 Dec 2025, 3:45:12 PM | |
| StockholmFileTest_detectWussBrackets_9m.html | 8 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_fullWUSSsecondaryStructureForRNASequence_11c.html | 49 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_pfamFileDataExtraction_1cu.html | 56 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_pfamFileIO_j2.html | 50 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_rfamFileIO_8z.html | 52 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_secondaryStructureForRNASequence_25.html | 50 kB | 01 Dec 2025, 3:45:13 PM | |
| StockholmFileTest_stockholmFileRnaSSAlphaChars_v3.html | 46 kB | 01 Dec 2025, 3:45:13 PM | |
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| StockholmFileTest_testAnnotationEquivalence_o9.html | 12 kB | 01 Dec 2025, 3:45:13 PM | |
| StructureFile.html | 446 kB | 01 Dec 2025, 3:45:11 PM | |
| StructureFile.js | 97 kB | 01 Dec 2025, 3:45:11 PM | |
| TCoffeeScoreFile.html | 362 kB | 01 Dec 2025, 3:45:11 PM | |
| TCoffeeScoreFile.js | 15 kB | 01 Dec 2025, 3:45:11 PM | |
| TCoffeeScoreFileTest.html | 171 kB | 01 Dec 2025, 3:45:15 PM | |
| TCoffeeScoreFileTest.js | 4 kB | 01 Dec 2025, 3:45:15 PM | |
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| TCoffeeScoreFileTest_testGetAsList_qi.html | 11 kB | 01 Dec 2025, 3:45:15 PM | |
| TCoffeeScoreFileTest_testHeightAndWidthWithResidueNumbers_se.html | 11 kB | 01 Dec 2025, 3:45:15 PM | |
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| TCoffeeScoreFileTest_testParse_u0.html | 11 kB | 01 Dec 2025, 3:45:15 PM | |
| TCoffeeScoreFileTest_testReadBlock_vp.html | 10 kB | 01 Dec 2025, 3:45:15 PM | |
| TCoffeeScoreFileTest_testReadHeader_rt.html | 12 kB | 01 Dec 2025, 3:45:15 PM | |
| TCoffeeScoreFileTest_testWrongFile_gj.html | 10 kB | 01 Dec 2025, 3:45:15 PM | |
| VamsasAppDatastore.html | 1.26 MB | 01 Dec 2025, 3:45:11 PM | |
| VamsasAppDatastore.js | 13 kB | 01 Dec 2025, 3:45:11 PM | |
| WSWUBlastClient.html | 177 kB | 01 Dec 2025, 3:45:11 PM | |
| WSWUBlastClient.js | 2 kB | 01 Dec 2025, 3:45:11 PM | |
| WindowsFileLoadAndSaveTest.html | 66 kB | 01 Dec 2025, 3:45:15 PM | |
| WindowsFileLoadAndSaveTest.js | 1 kB | 01 Dec 2025, 3:45:15 PM | |
| WindowsFileLoadAndSaveTest_loadAndSaveAlignment_160.html | 106 kB | 01 Dec 2025, 3:45:15 PM | |
| pkg-summary.html | 86 kB | 01 Dec 2025, 3:45:15 PM | |
| quick-wins.html | 32 kB | 01 Dec 2025, 3:45:15 PM | |
| test-AnnotatedPDBFileInputTest.html | 10 kB | 01 Dec 2025, 3:44:58 PM | |
| test-AnnotationExporterTest.html | 9 kB | 01 Dec 2025, 3:44:58 PM | |
| test-AnnotationFileIOTest.html | 10 kB | 01 Dec 2025, 3:44:58 PM | |
| test-BackupFilesTest.html | 11 kB | 01 Dec 2025, 3:44:58 PM | |
| test-BioJsHTMLOutputTest.html | 10 kB | 01 Dec 2025, 3:44:58 PM | |
| test-ClustalFileTest.html | 9 kB | 01 Dec 2025, 3:44:58 PM | |
| test-CrossRef2xmlTests.html | 9 kB | 01 Dec 2025, 3:44:58 PM | |
| test-EmblFlatFileTest.html | 11 kB | 01 Dec 2025, 3:44:58 PM | |
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| test-GenBankFileTest.html | 9 kB | 01 Dec 2025, 3:44:58 PM | |
| test-HtmlFileTest.html | 8 kB | 01 Dec 2025, 3:44:58 PM | |
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| test-JSONFileTest.html | 13 kB | 01 Dec 2025, 3:44:58 PM | |
| test-JalviewExportPropertiesTests.html | 9 kB | 01 Dec 2025, 3:44:58 PM | |
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| test-JalviewFileViewTest.html | 10 kB | 01 Dec 2025, 3:44:58 PM | |
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| top-risks.html | 33 kB | 01 Dec 2025, 3:45:15 PM |