Build #63

Build and run tests under Java 11

Build: #63 was successful

Job: Clover and Tests was successful

Stages & jobs

  1. Default Stage

Test results

  • 1,448 tests in total
  • 2 minutes taken in total.

The following 1,448 tests have passed:

All successful tests
Status Test Duration
Successful AAFrequencyTest testCalculate_noProfile History
< 1 sec
Successful AAFrequencyTest testCalculate_withProfile History
< 1 sec
Successful AAFrequencyTest testCompleteConsensus_ignoreGaps_noLogo History
< 1 sec
Successful AAFrequencyTest testCompleteConsensus_includeGaps_showLogo History
< 1 sec
Successful AAFrequencyTest testExtractCdnaProfile History
< 1 sec
Successful AAFrequencyTest testExtractCdnaProfile_countGaps History
< 1 sec
Successful AAFrequencyTest testExtractProfile History
< 1 sec
Successful AAFrequencyTest testExtractProfile_countGaps History
< 1 sec
Successful AlignSeqTest testExtractGaps History
< 1 sec
Successful AlignSeqTest testIndexEncode_nucleotide History
< 1 sec
Successful AlignSeqTest testIndexEncode_peptide History
< 1 sec
Successful AlignmentAnnotationUtilsTest testAsList History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetShownHiddenTypes_forSelectionGroup History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetShownHiddenTypes_noSequenceSelected History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetShownHiddenTypes_withGraphGroups History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetVisibleGraphGroups History
< 1 sec
Successful AlignmentSorterTest testSortByFeature_density History
< 1 sec
Successful AlignmentSorterTest testSortByFeature_score History
< 1 sec
Successful AlignmentUtilsTests testAddMappedPositions History
< 1 sec
Successful AlignmentUtilsTests testAddMappedPositions_withStopCodon History
< 1 sec
Successful AlignmentUtilsTests testAlignAsSameSequences History
< 1 sec
Successful AlignmentUtilsTests testAlignAsSameSequencesMultipleSubSeq History
< 1 sec
Successful AlignmentUtilsTests testAlignAs_alternateTranscriptsUngapped History
< 1 sec
Successful AlignmentUtilsTests testAlignProteinAsDna History
< 1 sec
Successful AlignmentUtilsTests testAlignProteinAsDna_incompleteStartCodon History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_keepIntronGapsOnly History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_mappedProteinProtein History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withMapping_noIntrons History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withMapping_withIntrons History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withMapping_withUnmappedProtein History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withTrailingPeptide History
< 1 sec
Successful AlignmentUtilsTests testExpandContext History
< 1 sec
Successful AlignmentUtilsTests testExpandContext_annotation History
< 1 sec
Successful AlignmentUtilsTests testFindCdsPositions History
< 1 sec
Successful AlignmentUtilsTests testFindCdsPositions_fivePrimeIncomplete History
< 1 sec
Successful AlignmentUtilsTests testGetSequencesByName History
< 1 sec
Successful AlignmentUtilsTests testHasCrossRef History
< 1 sec
Successful AlignmentUtilsTests testHaveCrossRef History
< 1 sec
Successful AlignmentUtilsTests testIsMappable History
< 1 sec
Successful AlignmentUtilsTests testMakeCdsAlignment History
< 1 sec
Successful AlignmentUtilsTests testMakeCdsAlignment_alternativeTranscripts History
< 1 sec
Successful AlignmentUtilsTests testMakeCdsAlignment_filterProducts History
< 1 sec
Successful AlignmentUtilsTests testMakeCdsAlignment_multipleProteins History
< 1 sec
Successful AlignmentUtilsTests testMapCdnaToProtein_forSubsequence History
< 1 sec
Successful AlignmentUtilsTests testMapCdsToProtein History
< 1 sec
Successful AlignmentUtilsTests testMapProteinAlignmentToCdna_noXrefs History
< 1 sec
Successful AlignmentUtilsTests testMapProteinAlignmentToCdna_prioritiseXrefs History
< 1 sec
Successful AlignmentUtilsTests testMapProteinAlignmentToCdna_withStartAndStopCodons History
< 1 sec
Successful AlignmentUtilsTests testMapProteinAlignmentToCdna_withXrefs History
< 1 sec
Successful AlignmentUtilsTests testShowOrHideSequenceAnnotations History
< 1 sec
Successful AlignmentUtilsTests testTransferFeatures History
< 1 sec
Successful AlignmentUtilsTests testTransferFeatures_withOmit History
< 1 sec
Successful AlignmentUtilsTests testTransferFeatures_withSelect History
< 1 sec
Successful AlignmentUtilsTests testTransferGeneLoci History
< 1 sec
Successful AlignmentUtilsTests testTranslatesAs History
< 1 sec
Successful AnnotationSorterTest testNoSort_autocalcFirst History
< 1 sec
Successful AnnotationSorterTest testSortBySequenceAndType_autocalcFirst History
< 1 sec
Successful AnnotationSorterTest testSortBySequenceAndType_autocalcLast History
< 1 sec
Successful AnnotationSorterTest testSortByTypeAndSequence_autocalcFirst History
< 1 sec
Successful AnnotationSorterTest testSortByTypeAndSequence_autocalcLast History
< 1 sec
Successful AnnotationSorterTest testSort_timingPresorted History
< 1 sec
Successful AnnotationSorterTest testSort_timingSemisorted History
1 sec
Successful AnnotationSorterTest testSort_timingUnsorted History
< 1 sec
Successful CodingUtilsTest testDecodeCodon History
< 1 sec
Successful CodingUtilsTest testDecodeNucleotide History
< 1 sec
Successful CodingUtilsTest testEncodeCodon History
< 1 sec
Successful ConservationTest testCalculate_noThreshold History
< 1 sec
Successful ConservationTest testCalculate_threshold History
< 1 sec
Successful ConservationTest testCountConservationAndGaps History
< 1 sec
Successful ConservationTest testRecordConservation History
< 1 sec
Successful ConservationTest testVerdict History
< 1 sec
Successful CrossRefTest testFindXDbRefs History
< 1 sec
Successful CrossRefTest testFindXrefSequences_fromDbRefMap History
< 1 sec
Successful CrossRefTest testFindXrefSequences_indirectDbrefToNucleotide History
< 1 sec
Successful CrossRefTest testFindXrefSequences_indirectDbrefToProtein History
< 1 sec
Successful CrossRefTest testFindXrefSequences_noDbrefs History
< 1 sec
Successful CrossRefTest testFindXrefSourcesForSequence_proteinToDna History
< 1 sec
Successful CrossRefTest testSameSequence History
< 1 sec
Successful CrossRefTest testSearchDataset History
< 1 sec
Successful DnaTest testCompareCodonPos History
< 1 sec
Successful DnaTest testCompareCodonPos_isSymmetric History
< 1 sec
Successful DnaTest testCompareCodonPos_oneOnly History
< 1 sec
Successful DnaTest testConvertCodon History
< 1 sec
Successful DnaTest testGetComplement History
< 1 sec
Successful DnaTest testReverseCdna History
< 1 sec
Successful DnaTest testReverseSequence History
< 1 sec
Successful DnaTest testTranslateCdna_hiddenColumns History
< 1 sec
Successful DnaTest testTranslateCdna_sequenceOrderIndependent History
< 1 sec
Successful DnaTest testTranslateCdna_simple History
< 1 sec
Successful DnaTest testTranslateCdna_withUntranslatableCodons History
< 1 sec
Successful DnaTest testTranslateCdna_withUntranslatableCodonsAndHiddenColumns History
< 1 sec
Successful FinderTest testFindAll History
< 1 sec
Successful FinderTest testFindAll_caseSensitive History
< 1 sec
Successful FinderTest testFindAll_inSelection History
< 1 sec
Successful FinderTest testFindAll_maximalResultOnly History
< 1 sec
Successful FinderTest testFindAll_sequenceIds History
< 1 sec
Successful FinderTest testFindNext History
< 1 sec
Successful FinderTest testFindNext_inSelection History
< 1 sec
Successful FinderTest testFind_findAll History
< 1 sec
Successful FinderTest testFind_findAllInSelectionWithShortSequence History
< 1 sec
Successful FinderTest testFind_findNext History
< 1 sec
Successful FinderTest testFind_ignoreHiddenColumns History
< 1 sec
Successful FinderTest testFind_inDescription History
< 1 sec
Successful FinderTest testFind_regex History
< 1 sec
Successful FinderTest testFind_residueNumber History
< 1 sec
Successful FinderTest testFind_withHiddenColumns History
< 1 sec
Successful FinderTest testFind_withHiddenColumnsAndSelection History
< 1 sec
Successful GeneticCodesTest testGetCodeTable History
< 1 sec
Successful GeneticCodesTest testGetCodeTables History
< 1 sec
Successful GeneticCodesTest testTranslate History
< 1 sec
Successful GeneticCodesTest testTranslateCanonical History
< 1 sec
Successful GeneticCodesTest testTranslate_nonStandardTableAmbiguityCodes History
< 1 sec
Successful GeneticCodesTest testTranslate_standardTable History
< 1 sec
Successful GeneticCodesTest testTranslate_standardTableAmbiguityCodes History
< 1 sec
Successful GroupingTest testMakeGroupsWithBoth History
< 1 sec
Successful ParsePropertiesTest testGetScoresFromDescription History
< 1 sec
Successful ParsePropertiesTest testGetScoresFromDescription_twoScores History
< 1 sec
Successful ParsePropertiesTest testGetScoresFromDescription_wordBoundaries History
< 1 sec
Successful RnaTest testGetHelixMap_oneHelix History
< 1 sec
Successful RnaTest testGetHelixMap_twoHelices History
< 1 sec
Successful RnaTest testGetMatchingOpeningParenthesis History
< 1 sec
Successful RnaTest testGetRNASecStrucState History
< 1 sec
Successful RnaTest testGetSimpleBPs History
< 1 sec
Successful RnaTest testGetSimpleBPs_unmatchedCloser History
< 1 sec
Successful RnaTest testGetSimpleBPs_unmatchedOpener History
< 1 sec
Successful RnaTest testIsCanonicalOrWobblePair History
< 1 sec
Successful RnaTest testIsCanonicalPair History
< 1 sec
Successful RnaTest testIsClosingParenthesis History
< 1 sec
Successful RnaTest testIsOpeningParenthesis History
< 1 sec
Successful RnaTest testIsRnaSecondaryStructureSymbol History
< 1 sec
Successful SeqsetUtilsTest testSeqFeatureAddition History
< 1 sec
Successful SequenceIdMatcherTest test_seqIdNameEquals History
< 1 sec
Successful TestAlignSeq testExtractGaps History
< 1 sec
Successful TestAlignSeq testGetMappingForS1 History
< 1 sec
Successful TestAlignSeq testPrintAlignment History
< 1 sec
Successful FeatureDistanceModelTest testFeatureScoreModel History
< 1 sec
Successful FeatureDistanceModelTest testFeatureScoreModel_HiddenColumns History
< 1 sec
Successful FeatureDistanceModelTest testFeatureScoreModel_hiddenFirstColumn History
< 1 sec
Successful FeatureDistanceModelTest testFindDistances History
< 1 sec
Successful FeatureDistanceModelTest testFindDistances_withParams History
< 1 sec
Successful FeatureDistanceModelTest testFindFeatureAt_PointFeature History
< 1 sec
Successful PIDModelTest testComputePID_matchLongestSequence History
< 1 sec
Successful PIDModelTest testComputePID_matchShortestSequence History
< 1 sec
Successful PIDModelTest testComputePID_matchesComparisonPID History
< 1 sec
Successful PIDModelTest testGetPairwiseScore History
< 1 sec
Successful ScoreMatrixTest testBlosum62_values History
< 1 sec
Successful ScoreMatrixTest testBuildSymbolIndex History
< 1 sec
Successful ScoreMatrixTest testBuildSymbolIndex_nonAscii History
< 1 sec
Successful ScoreMatrixTest testComputePairwiseScores History
< 1 sec
Successful ScoreMatrixTest testConstructor History
< 1 sec
Successful ScoreMatrixTest testConstructor_gapDash History
< 1 sec
Successful ScoreMatrixTest testConstructor_matrixNotSquare History
< 1 sec
Successful ScoreMatrixTest testConstructor_matrixTooBig History
< 1 sec
Successful ScoreMatrixTest testConstructor_matrixTooSmall History
< 1 sec
Successful ScoreMatrixTest testEqualsAndHashCode History
< 1 sec
Successful ScoreMatrixTest testGetMatrix History
< 1 sec
Successful ScoreMatrixTest testGetMatrixIndex History
< 1 sec
Successful ScoreMatrixTest testGetMaximumScore History
< 1 sec
Successful ScoreMatrixTest testGetMinimumScore History
< 1 sec
Successful ScoreMatrixTest testGetPairwiseScore History
< 1 sec
Successful ScoreMatrixTest testGetSize History
< 1 sec
Successful ScoreMatrixTest testIsSymmetric History
< 1 sec
Successful ScoreMatrixTest testOutputMatrix_html History
< 1 sec
Successful ScoreMatrixTest testOutputMatrix_roundTrip History
< 1 sec
Successful ScoreMatrixTest testSymmetric History
< 1 sec
Successful ScoreMatrixTest testcomputeSimilarity_matchLongestSequence History
< 1 sec
Successful ScoreMatrixTest testcomputeSimilarity_matchShortestSequence History
< 1 sec
Successful ScoreModelsTest testConstructor History
< 1 sec
Successful ArgsParserTest testContains History
< 1 sec
Successful ArgsParserTest testGetValue History
< 1 sec
Successful ArgsParserTest testGetValue_decoded History
< 1 sec
Successful ArgsParserTest testNextValue History
< 1 sec
Successful CacheTest testSetDateProperty History
< 1 sec
Successful CacheTest testVersionChecker History
10 secs
Successful CommandLineOperations reportCurrentWorkingDirectory History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-annotations examples/testdata/plantfdx.annotations] executed successfully!, Failed command : -annotations examples/testdata/plantfdx.annotations) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-color zappo] executed successfully!, Failed command : -color zappo) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-features examples/testdata/plantfdx.features] executed successfully!, Failed command : -features examples/testdata/plantfdx.features) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-jabaws http://www.compbio.dundee.ac.uk/jabaws] executed successfully!, Failed command : -jabaws http://www.compbio.dundee.ac.uk/jabaws) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-noquestionnaire] executed successfully!, Failed command : -noquestionnaire) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-nosortbytree] executed successfully!, Failed command : -nosortbytree) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-nousagestats] executed successfully!, Failed command : -nousagestats) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-open examples/uniref50.fa] executed successfully!, Failed command : -open examples/uniref50.fa) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-props test/jalview/bin/testProps.jvprops] executed successfully!, Failed command : -props File) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-sortbytree] executed successfully!, Failed command : -sortbytree) History
< 1 sec
Successful CommandLineOperations testAllInputOperations(CMD [-tree examples/testdata/uniref50_test_tree] executed successfully!, Failed command : -tree examples/testdata/uniref50_test_tree) History
< 1 sec
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -blc, test/jalview/bin/test_uniref50_out.blc, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -clustal, test/jalview/bin/test_uniref50_out.aln, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -fasta, test/jalview/bin/test_uniref50_out.mfa, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -html, test/jalview/bin/test_uniref50_out.html, true, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -jalview, test/jalview/bin/test_uniref50_out.jvp, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -msf, test/jalview/bin/test_uniref50_out.msf, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -pfam, test/jalview/bin/test_uniref50_out.pfam, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -pileup, test/jalview/bin/test_uniref50_out.aln, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -pir, test/jalview/bin/test_uniref50_out.pir, true, 2096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -png, test/jalview/bin/test_uniref50_out.png, true, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -svg, test/jalview/bin/test_uniref50_out.svg, false, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(nodisplay -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, false, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(nodisplay -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(nogui -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, false, 4096, 13000) History
2 secs
Successful CommandLineOperations testHeadlessModeOutputOperations(nogui -open examples/uniref50.fa, -eps, test/jalview/bin/test_uniref50_out.eps, true, 4096, 13000) History
2 secs
Successful HiDPISettingTest1 testHiDPISettingInit History
< 1 sec
Successful HiDPISettingTest2 testHiDPISettings(1) History
1 sec
Successful HiDPISettingTest2 testHiDPISettings(10) History
1 sec
Successful HiDPISettingTest2 testHiDPISettings(2) History
1 sec
Successful HiDPISettingTest2 testHiDPISettings(4) History
1 sec
Successful JalviewLiteTest testSeparatorListToArray History
< 1 sec
Successful MemorySettingTest testGetMemorySetting History
< 1 sec
Successful EditCommandTest testAddEdit_groupInsertGaps History
< 1 sec
Successful EditCommandTest testAddEdit_multipleDeleteGap History
< 1 sec
Successful EditCommandTest testAddEdit_multipleInsertGap History
< 1 sec
Successful EditCommandTest testAddEdit_removeAllGaps History
< 1 sec
Successful EditCommandTest testAppendEdit_deleteGap History
< 1 sec
Successful EditCommandTest testAppendEdit_insertGap History
< 1 sec
Successful EditCommandTest testCut History
< 1 sec
Successful EditCommandTest testCut_withFeatures History
< 1 sec
Successful EditCommandTest testCut_withFeatures5prime History
< 1 sec
Successful EditCommandTest testCut_withFeatures_exhaustive History
< 1 sec
Successful EditCommandTest testPriorState_multipleInserts History
< 1 sec
Successful EditCommandTest testPriorState_removeAllGaps History
< 1 sec
Successful EditCommandTest testPriorState_removeGappedCols History
< 1 sec
Successful EditCommandTest testPriorState_removeGapsMultipleSeqs History
< 1 sec
Successful EditCommandTest testPriorState_singleDelete History
< 1 sec
Successful EditCommandTest testPriorState_singleInsert History
< 1 sec
Successful EditCommandTest testPriorState_singleInsertWithOffset History
< 1 sec
Successful EditCommandTest testReplace History
< 1 sec
Successful EditCommandTest testReplaceFirstResiduesWithGaps History
< 1 sec
Successful EditCommandTest testReplace_withGaps History
< 1 sec
Successful EditCommandTest testUndo_cut History
< 1 sec
Successful EditCommandTest testUndo_deleteGap History
< 1 sec
Successful EditCommandTest testUndo_insertGap History
< 1 sec
Successful EditCommandTest testUndo_multipleCommands History
< 1 sec
Successful EditCommandTest testUndo_multipleInsertGaps History
< 1 sec
Successful TrimRegionCommandTest testTrimLeft_noColumns History
< 1 sec
Successful TrimRegionCommandTest testTrimLeft_oneColumn History
< 1 sec
Successful TrimRegionCommandTest testTrimLeft_withUndoAndRedo History
< 1 sec
Successful TrimRegionCommandTest testTrimRight_noColumns History
< 1 sec
Successful TrimRegionCommandTest testTrimRight_oneColumn History
< 1 sec
Successful TrimRegionCommandTest testTrimRight_withUndoAndRedo History
< 1 sec
Successful AlignViewControllerTest testFindColumnsWithFeature History
< 1 sec
Successful AlignViewControllerTest testSelectColumnsWithHighlight History
< 1 sec
Successful AlignedCodonFrameTest testAddMap History
< 1 sec
Successful AlignedCodonFrameTest testCouldReplaceSequence History
< 1 sec
Successful AlignedCodonFrameTest testFindAlignedSequence History
< 1 sec
Successful AlignedCodonFrameTest testGetCoveringCodonMapping History
< 1 sec
Successful AlignedCodonFrameTest testGetCoveringMapping History
< 1 sec
Successful AlignedCodonFrameTest testGetMappedCodons History
< 1 sec
Successful AlignedCodonFrameTest testGetMappedCodons_dnaVariants History
< 1 sec
Successful AlignedCodonFrameTest testGetMappedCodons_forSubSequences History
< 1 sec
Successful AlignedCodonFrameTest testGetMappedRegion History
< 1 sec
Successful AlignedCodonFrameTest testGetMappedRegion_eitherWay History
< 1 sec
Successful AlignedCodonFrameTest testIsRealisableWith History
< 1 sec
Successful AlignedCodonFrameTest testMarkMappedRegion History
< 1 sec
Successful AlignedCodonFrameTest testRealiseWith History
< 1 sec
Successful AlignedCodonIteratorTest testAnother History
< 1 sec
Successful AlignedCodonIteratorTest testNext History
< 1 sec
Successful AlignedCodonIteratorTest testNext_incompleteCodon History
< 1 sec
Successful AlignedCodonIteratorTest testNext_unmappedPeptide History
< 1 sec
Successful AlignedCodonIteratorTest testNext_withOffset History
< 1 sec
Successful AlignedCodonTest testEquals History
< 1 sec
Successful AlignedCodonTest testToString History
< 1 sec
Successful AlignmentAnnotationTests testAdjustForAlignment History
< 1 sec
Successful AlignmentAnnotationTests testCopyConstructor History
< 1 sec
Successful AlignmentAnnotationTests testGetDefaultRnaHelixSymbol History
< 1 sec
Successful AlignmentAnnotationTests testIsQuantitative History
< 1 sec
Successful AlignmentAnnotationTests testLiftOver History
< 1 sec
Successful AlignmentAnnotationTests testMakeVisibleAnnotation History
< 1 sec
Successful AlignmentTest testAddCodonFrame History
< 1 sec
Successful AlignmentTest testAddSequencePreserveDatasetIntegrity History
< 1 sec
Successful AlignmentTest testAlignAs_cdnaAsProtein History
< 1 sec
Successful AlignmentTest testAlignAs_cdnaAsProtein_singleSequence History
< 1 sec
Successful AlignmentTest testAlignAs_dnaAsDna History
< 1 sec
Successful AlignmentTest testAlignAs_proteinAsCdna History
< 1 sec
Successful AlignmentTest testAppend History
< 1 sec
Successful AlignmentTest testAssertDatasetIsNormalised History
< 1 sec
Successful AlignmentTest testCopyConstructor History
< 1 sec
Successful AlignmentTest testCreateDatasetAlignment History
< 1 sec
Successful AlignmentTest testCreateDatasetAlignmentWithMappedToSeqs History
< 1 sec
Successful AlignmentTest testCreateDataset_updateDbrefMappings History
< 1 sec
Successful AlignmentTest testDeleteAllAnnotations_excludingAutocalculated History
< 1 sec
Successful AlignmentTest testDeleteAllAnnotations_includingAutocalculated History
< 1 sec
Successful AlignmentTest testDeleteHiddenSequence History
< 1 sec
Successful AlignmentTest testDeleteSequenceByIndex History
< 1 sec
Successful AlignmentTest testDeleteSequenceBySeq History
< 1 sec
Successful AlignmentTest testFindAnnotation_byCalcId History
< 1 sec
Successful AlignmentTest testFindAnnotations_bySeqLabelandorCalcId History
< 1 sec
Successful AlignmentTest testFindGroup History
< 1 sec
Successful AlignmentTest testFindOrCreateForNullCalcId History
< 1 sec
Successful AlignmentTest testGetVisibleWidth History
< 1 sec
Successful AlignmentTest testGetWidth History
< 1 sec
Successful AlignmentTest testPadGaps History
< 1 sec
Successful AlignmentTest testPropagateInsertions History
< 1 sec
Successful AlignmentTest testPropagateInsertionsOverlap History
< 1 sec
Successful AlignmentTest testSetDataset_selfReference History
< 1 sec
Successful AlignmentTest testSetHiddenColumns History
< 1 sec
Successful AlignmentTest testVerifyAlignmentDatasetRefs History
< 1 sec
Successful AlignmentViewTest testGetVisibleAlignmentGapChar History
< 1 sec
Successful AlignmentViewTest testGetVisibleContigs History
< 1 sec
Successful AllColsIteratorTest testHasNextAndNext History
< 1 sec
Successful AllColsIteratorTest testLastNext History
< 1 sec
Successful AllColsIteratorTest testOneElement History
< 1 sec
Successful AllColsIteratorTest testRemove History
< 1 sec
Successful AllRowsIteratorTest testHasNextAndNext History
< 1 sec
Successful AllRowsIteratorTest testLastNext History
< 1 sec
Successful AllRowsIteratorTest testOneElement History
< 1 sec
Successful AllRowsIteratorTest testRemove History
< 1 sec
Successful CigarArrayTest testConstructor History
< 1 sec
Successful ColumnSelectionTest testAddElement History
< 1 sec
Successful ColumnSelectionTest testCopyConstructor History
< 1 sec
Successful ColumnSelectionTest testEquals History
< 1 sec
Successful ColumnSelectionTest testFilterAnnotations History
< 1 sec
Successful ColumnSelectionTest testGetSelected History
< 1 sec
Successful ColumnSelectionTest testGetSelectedRanges History
< 1 sec
Successful ColumnSelectionTest testGetSelected_concurrentModification History
< 1 sec
Successful ColumnSelectionTest testGetSelected_isReadOnly History
< 1 sec
Successful ColumnSelectionTest testHideColumns_withSelection History
< 1 sec
Successful ColumnSelectionTest testHideSelectedColumns History
< 1 sec
Successful ColumnSelectionTest testInvertColumnSelection History
< 1 sec
Successful ColumnSelectionTest testMarkColumns History
< 1 sec
Successful ColumnSelectionTest testMarkColumns_extend History
< 1 sec
Successful ColumnSelectionTest testMarkColumns_invert History
< 1 sec
Successful ColumnSelectionTest testMarkColumns_toggle History
< 1 sec
Successful ColumnSelectionTest testMaxColumnSelection History
< 1 sec
Successful ColumnSelectionTest testMinColumnSelection History
< 1 sec
Successful ColumnSelectionTest testRemoveElement History
< 1 sec
Successful ColumnSelectionTest testSetElementsFrom History
< 1 sec
Successful ColumnSelectionTest testStretchGroup_expand History
< 1 sec
Successful ColumnSelectionTest testStretchGroup_shrink History
< 1 sec
Successful DBRefEntryTest testEqualRef History
< 1 sec
Successful DBRefEntryTest testIsPrimaryCandidate History
< 1 sec
Successful DBRefEntryTest testUpdateFrom History
< 1 sec
Successful HiddenColumnsCursorTest testConstructor History
< 1 sec
Successful HiddenColumnsCursorTest testFindRegionForColumn History
< 1 sec
Successful HiddenColumnsCursorTest testFindRegionForColumn_Visible History
< 1 sec
Successful HiddenColumnsTest testAdjustForHiddenColumns History
< 1 sec
Successful HiddenColumnsTest testBoundedIterator History
< 1 sec
Successful HiddenColumnsTest testBoundedStartIterator History
< 1 sec
Successful HiddenColumnsTest testCopyConstructor History
< 1 sec
Successful HiddenColumnsTest testCopyConstructor2 History
< 1 sec
Successful HiddenColumnsTest testEquals History
< 1 sec
Successful HiddenColumnsTest testFindColumnPosition History
< 1 sec
Successful HiddenColumnsTest testGetNextHiddenBoundary_Left History
< 1 sec
Successful HiddenColumnsTest testGetNextHiddenBoundary_Right History
< 1 sec
Successful HiddenColumnsTest testGetRegionWithEdgeAtRes History
< 1 sec
Successful HiddenColumnsTest testGetSize History
< 1 sec
Successful HiddenColumnsTest testGetVisibleColsIterator History
< 1 sec
Successful HiddenColumnsTest testGetVisibleStartAndEndIndex History
< 1 sec
Successful HiddenColumnsTest testHasHiddenColumns History
< 1 sec
Successful HiddenColumnsTest testHasManyHiddenColumns History
< 1 sec
Successful HiddenColumnsTest testHashCode History
< 1 sec
Successful HiddenColumnsTest testHideColumns History
< 1 sec
Successful HiddenColumnsTest testHideColumns_BitSet History
< 1 sec
Successful HiddenColumnsTest testHideColumns_BitSet_range History
< 1 sec
Successful HiddenColumnsTest testHideColumns_subsumingHidden History
< 1 sec
Successful HiddenColumnsTest testHideInsertionsFor History
< 1 sec
Successful HiddenColumnsTest testIsVisible History
< 1 sec
Successful HiddenColumnsTest testIterator History
< 1 sec
Successful HiddenColumnsTest testOffsetByVisibleColumns History
< 1 sec
Successful HiddenColumnsTest testRegionsToString History
< 1 sec
Successful HiddenColumnsTest testRevealAllHiddenColumns History
< 1 sec
Successful HiddenColumnsTest testRevealHiddenColumns History
< 1 sec
Successful HiddenColumnsTest testVisibleBlocksVisBoundsIterator History
< 1 sec
Successful HiddenColumnsTest testVisibleContigsIterator History
< 1 sec
Successful HiddenSequencesTest testAdjustForHiddenSeqs History
< 1 sec
Successful HiddenSequencesTest testAdjustHeightSequenceAdded History
< 1 sec
Successful HiddenSequencesTest testAdjustHeightSequenceDeleted History
< 1 sec
Successful HiddenSequencesTest testFindIndexNFromRow History
< 1 sec
Successful HiddenSequencesTest testFindIndexWithoutHiddenSeqs History
< 1 sec
Successful HiddenSequencesTest testGetFullAlignment History
< 1 sec
Successful HiddenSequencesTest testGetHiddenSequence History
< 1 sec
Successful HiddenSequencesTest testGetSize History
< 1 sec
Successful HiddenSequencesTest testGetWidth History
< 1 sec
Successful HiddenSequencesTest testHideShowLastSequences History
< 1 sec
Successful HiddenSequencesTest testHideShowSequence History
< 1 sec
Successful HiddenSequencesTest testHideShowSequence_withHiddenRepSequence History
< 1 sec
Successful HiddenSequencesTest testIsHidden History
< 1 sec
Successful MappedFeaturesTest testFindProteinVariants History
< 1 sec
Successful MappingTest testCopyConstructor History
< 1 sec
Successful MappingTest testIntersectVisContigs History
< 1 sec
Successful MappingTest testToString History
< 1 sec
Successful MappingTypeTest testGetFromRatio History
< 1 sec
Successful MappingTypeTest testGetInverse History
< 1 sec
Successful MappingTypeTest testGetToRatio History
< 1 sec
Successful MatchTest testEquals History
< 1 sec
Successful MatchTest testToString History
< 1 sec
Successful PDBEntryTest testConstructor_fromDbref History
< 1 sec
Successful PDBEntryTest testEquals History
< 1 sec
Successful PDBEntryTest testGetType History
< 1 sec
Successful PDBEntryTest testSetChainCode History
< 1 sec
Successful PDBEntryTest testTypeMatches History
< 1 sec
Successful PDBEntryTest testUpdateFrom History
< 1 sec
Successful RangeElementsIteratorTest testHasNextAndNextEndHidden History
< 1 sec
Successful RangeElementsIteratorTest testHasNextAndNextNoHidden History
< 1 sec
Successful RangeElementsIteratorTest testHasNextAndNextStartHidden History
< 1 sec
Successful RangeElementsIteratorTest testHasNextAndNextWithHidden History
< 1 sec
Successful RangeElementsIteratorTest testLastNextEndHidden History
< 1 sec
Successful RangeElementsIteratorTest testLastNextNoHidden History
< 1 sec
Successful RangeElementsIteratorTest testLastNextStartHidden History
< 1 sec
Successful RangeElementsIteratorTest testLastNextWithHidden History
< 1 sec
Successful RangeElementsIteratorTest testRemove History
< 1 sec
Successful ResidueCountTest testAddGap History
< 1 sec
Successful ResidueCountTest testGetModalCount History
< 1 sec
Successful ResidueCountTest testGetResiduesForCount History
< 1 sec
Successful ResidueCountTest testGetSymbolCounts_nucleotide History
< 1 sec
Successful ResidueCountTest testGetSymbolCounts_peptide History
< 1 sec
Successful ResidueCountTest testGetTooltip History
< 1 sec
Successful ResidueCountTest testOverflow History
< 1 sec
Successful ResidueCountTest testPut History
< 1 sec
Successful ResidueCountTest testToString History
< 1 sec
Successful ResidueCountTest test_countNucleotide History
< 1 sec
Successful ResidueCountTest test_countPeptide History
< 1 sec
Successful ResidueCountTest test_unexpectedNucleotide History
< 1 sec
Successful ResidueCountTest test_unexpectedPeptide History
< 1 sec
Successful SearchResultsTest testAddResult History
< 1 sec
Successful SearchResultsTest testEquals History
< 1 sec
Successful SearchResultsTest testEquals_distinctSequences History
< 1 sec
Successful SearchResultsTest testEquals_orderDiffers History
< 1 sec
Successful SearchResultsTest testHashcode History
< 1 sec
Successful SearchResultsTest testInvolvesSequence History
< 1 sec
Successful SearchResultsTest testMarkColumns History
< 1 sec
Successful SearchResultsTest testMatchConstructor History
< 1 sec
Successful SearchResultsTest testMatchContains History
< 1 sec
Successful SearchResultsTest testToString History
< 1 sec
Successful SeqCigarTest testFindPosition History
< 1 sec
Successful SeqCigarTest testSomething History
< 1 sec
Successful SequenceDummyTest testBecome History
< 1 sec
Successful SequenceFeatureTest testCopyConstructors History
< 1 sec
Successful SequenceFeatureTest testEqualsAndHashCode History
< 1 sec
Successful SequenceFeatureTest testGetDetailsReport History
< 1 sec
Successful SequenceFeatureTest testGetDetailsReport_virtualFeature History
< 1 sec
Successful SequenceFeatureTest testGetStrand History
< 1 sec
Successful SequenceFeatureTest testGetValue History
< 1 sec
Successful SequenceFeatureTest testIsContactFeature History
< 1 sec
Successful SequenceGroupTest testAddOrRemove History
< 1 sec
Successful SequenceGroupTest testAddSequence History
< 1 sec
Successful SequenceGroupTest testConstructor_list History
< 1 sec
Successful SequenceGroupTest testContains History
< 1 sec
Successful SequenceGroupTest testCopyConstructor History
< 1 sec
Successful SequenceGroupTest testGetColourScheme History
< 1 sec
Successful SequenceGroupTest testSetContext History
< 1 sec
Successful SequenceTest testAddAlignmentAnnotation History
< 1 sec
Successful SequenceTest testAddDBRef History
< 1 sec
Successful SequenceTest testAddPDBId History
< 1 sec
Successful SequenceTest testAddSequenceFeatures History
< 1 sec
Successful SequenceTest testCheckValidRange History
< 1 sec
Successful SequenceTest testCopyConstructor_noDataset History
< 1 sec
Successful SequenceTest testCopyConstructor_withDataset History
< 1 sec
Successful SequenceTest testCreateDatasetSequence History
< 1 sec
Successful SequenceTest testDeleteChars History
< 1 sec
Successful SequenceTest testDeleteChars_withDbRefsAndFeatures History
< 1 sec
Successful SequenceTest testDeleteChars_withGaps History
< 1 sec
Successful SequenceTest testDeriveSequence_existingDataset History
< 1 sec
Successful SequenceTest testDeriveSequence_noDatasetGapped History
< 1 sec
Successful SequenceTest testDeriveSequence_noDatasetUngapped History
< 1 sec
Successful SequenceTest testFindFeatures History
< 1 sec
Successful SequenceTest testFindIndex History
< 1 sec
Successful SequenceTest testFindIndex_withCursor History
< 1 sec
Successful SequenceTest testFindPosition History
< 1 sec
Successful SequenceTest testFindPositionMap History
< 1 sec
Successful SequenceTest testFindPosition_withCursor History
< 1 sec
Successful SequenceTest testFindPosition_withCursorAndEdits History
< 1 sec
Successful SequenceTest testFindPositions History
< 1 sec
Successful SequenceTest testGapBitset History
< 1 sec
Successful SequenceTest testGapMap History
< 1 sec
Successful SequenceTest testGetAlignmentAnnotations_forCalcIdAndLabel History
< 1 sec
Successful SequenceTest testGetAlignmentAnnotations_forCalcIdLabelAndDescription History
< 1 sec
Successful SequenceTest testGetAnnotation History
< 1 sec
Successful SequenceTest testGetAnnotation_forLabel History
< 1 sec
Successful SequenceTest testGetCharAt History
< 1 sec
Successful SequenceTest testGetPrimaryDBRefs_nucleotide History
< 1 sec
Successful SequenceTest testGetPrimaryDBRefs_peptide History
< 1 sec
Successful SequenceTest testGetSequence History
< 1 sec
Successful SequenceTest testGetSequenceFeatures History
< 1 sec
Successful SequenceTest testGetStartGetEnd History
< 1 sec
Successful SequenceTest testGetSubsequence History
< 1 sec
Successful SequenceTest testInsertCharAt History
< 1 sec
Successful SequenceTest testInsertGapsAndGapmaps History
< 1 sec
Successful SequenceTest testIsProtein History
< 1 sec
Successful SequenceTest testIsProteinWithXorNAmbiguityCodes History
< 1 sec
Successful SequenceTest testLocateVisibleStartofSequence History
< 1 sec
Successful SequenceTest testReplace History
< 1 sec
Successful SequenceTest testSetDatasetSequence_cascading History
< 1 sec
Successful SequenceTest testSetDatasetSequence_toSelf History
< 1 sec
Successful SequenceTest testSetName History
< 1 sec
Successful SequenceTest testTransferAnnotation History
< 1 sec
Successful SequenceTest testUpdatePDBIds History
< 1 sec
Successful StartRegionIteratorTest testBasicBoundsIterator History
< 1 sec
Successful StartRegionIteratorTest testBoundsIteratorUsingCursor History
< 1 sec
Successful StartRegionIteratorTest testBoundsIteratorUsingNullCursor History
< 1 sec
Successful VisibleContigsIteratorTest testMultipleVisibleRegions History
< 1 sec
Successful VisibleContigsIteratorTest testSimpleVisibleRegions History
< 1 sec
Successful VisibleContigsIteratorTest testVisibleRegionsAtHiddenEdges History
< 1 sec
Successful VisibleRowsIteratorTest testHasNextAndNextEndHidden History
< 1 sec
Successful VisibleRowsIteratorTest testHasNextAndNextNoHidden History
< 1 sec
Successful VisibleRowsIteratorTest testHasNextAndNextStartHidden History
< 1 sec
Successful VisibleRowsIteratorTest testHasNextAndNextWithHidden History
< 1 sec
Successful VisibleRowsIteratorTest testLastNextEndHidden History
< 1 sec
Successful VisibleRowsIteratorTest testLastNextNoHidden History
< 1 sec
Successful VisibleRowsIteratorTest testLastNextStartHidden History
< 1 sec
Successful VisibleRowsIteratorTest testLastNextWithHidden History
< 1 sec
Successful VisibleRowsIteratorTest testRemove History
< 1 sec
Successful FeatureAttributesTest testAttributeNameComparator History
< 1 sec
Successful FeatureAttributesTest testDatatype History
< 1 sec
Successful FeatureAttributesTest testGetDescription History
< 1 sec
Successful FeatureAttributesTest testGetMinMax History
< 1 sec
Successful FeatureMatcherSetTest testAnd History
< 1 sec
Successful FeatureMatcherSetTest testFromString History
< 1 sec
Successful FeatureMatcherSetTest testGetMatchers History
< 1 sec
Successful FeatureMatcherSetTest testIsEmpty History
< 1 sec
Successful FeatureMatcherSetTest testMatches_byAttribute History
< 1 sec
Successful FeatureMatcherSetTest testMatches_compoundKey History
< 1 sec
Successful FeatureMatcherSetTest testOr History
< 1 sec
Successful FeatureMatcherSetTest testToStableString History
< 1 sec
Successful FeatureMatcherSetTest testToString History
< 1 sec
Successful FeatureMatcherTest testFromString History
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Successful FeatureMatcherTest testGetAttribute History
< 1 sec
Successful FeatureMatcherTest testGetMatcher History
< 1 sec
Successful FeatureMatcherTest testIsByAttribute History
< 1 sec
Successful FeatureMatcherTest testIsByLabel History
< 1 sec
Successful FeatureMatcherTest testIsByScore History
< 1 sec
Successful FeatureMatcherTest testMatches_byAttribute History
< 1 sec
Successful FeatureMatcherTest testMatches_byLabel History
< 1 sec
Successful FeatureMatcherTest testMatches_byScore History
< 1 sec
Successful FeatureMatcherTest testToStableString History
< 1 sec
Successful FeatureMatcherTest testToString History
< 1 sec
Successful FeatureStoreTest testAddFeature History
< 1 sec
Successful FeatureStoreTest testContains History
< 1 sec
Successful FeatureStoreTest testDelete History
< 1 sec
Successful FeatureStoreTest testDelete_readd History
< 1 sec
Successful FeatureStoreTest testFindFeatures_contactFeatures History
< 1 sec
Successful FeatureStoreTest testFindFeatures_mixed History
< 1 sec
Successful FeatureStoreTest testFindFeatures_nested History
< 1 sec
Successful FeatureStoreTest testFindFeatures_nonNested History
< 1 sec
Successful FeatureStoreTest testGetFeatureGroups History
< 1 sec
Successful FeatureStoreTest testGetFeatureLength History
< 1 sec
Successful FeatureStoreTest testGetFeaturesForGroup History
< 1 sec
Successful FeatureStoreTest testGetMinimumScore_getMaximumScore History
< 1 sec
Successful FeatureStoreTest testGetPositionalFeatures History
< 1 sec
Successful FeatureStoreTest testGetTotalFeatureLength History
< 1 sec
Successful FeatureStoreTest testIsEmpty History
< 1 sec
Successful FeatureStoreTest testListContains History
< 1 sec
Successful FeatureStoreTest testMax History
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Successful FeatureStoreTest testMin History
< 1 sec
Successful FeatureStoreTest testShiftFeatures History
< 1 sec
Successful SequenceFeaturesTest testConstructor History
< 1 sec
Successful SequenceFeaturesTest testDelete History
< 1 sec
Successful SequenceFeaturesTest testDeleteAll History
< 1 sec
Successful SequenceFeaturesTest testFindFeatures History
< 1 sec
Successful SequenceFeaturesTest testGetAllFeatures History
< 1 sec
Successful SequenceFeaturesTest testGetContactFeatures History
< 1 sec
Successful SequenceFeaturesTest testGetFeatureCount History
< 1 sec
Successful SequenceFeaturesTest testGetFeatureGroups History
< 1 sec
Successful SequenceFeaturesTest testGetFeatureTypes History
< 1 sec
Successful SequenceFeaturesTest testGetFeatureTypesForGroups History
< 1 sec
Successful SequenceFeaturesTest testGetFeatureTypes_byOntology History
< 1 sec
Successful SequenceFeaturesTest testGetFeaturesByOntology History
< 1 sec
Successful SequenceFeaturesTest testGetFeaturesForGroup History
< 1 sec
Successful SequenceFeaturesTest testGetMinimumScore_getMaximumScore History
< 1 sec
Successful SequenceFeaturesTest testGetNonPositionalFeatures History
< 1 sec
Successful SequenceFeaturesTest testGetPositionalFeatures History
< 1 sec
Successful SequenceFeaturesTest testGetTotalFeatureLength History
< 1 sec
Successful SequenceFeaturesTest testHasFeatures History
< 1 sec
Successful SequenceFeaturesTest testIsOntologyTerm History
< 1 sec
Successful SequenceFeaturesTest testShiftFeatures History
< 1 sec
Successful SequenceFeaturesTest testSortFeatures History
< 1 sec
Successful SequenceFeaturesTest testVarargsToTypes History
< 1 sec
Successful SparseIntArrayTest testAdd History
< 1 sec
Successful SparseIntArrayTest testCheckOverflow History
< 1 sec
Successful SparseIntArrayTest testPut History
< 1 sec
Successful SparseShortArrayTest testAdd History
< 1 sec
Successful SparseShortArrayTest testPut History
< 1 sec
Successful EnsemblCdnaTest testGetGenomicRangesFromFeatures History
< 1 sec
Successful EnsemblCdnaTest testGetGenomicRangesFromFeatures_mixedStrand History
< 1 sec
Successful EnsemblCdnaTest testGetGenomicRangesFromFeatures_reverseStrand History
< 1 sec
Successful EnsemblCdnaTest testGetIdentifyingFeatures History
< 1 sec
Successful EnsemblCdnaTest testIsValidReference History
< 1 sec
Successful EnsemblCdnaTest testRetainFeature History
< 1 sec
Successful EnsemblCdsTest testGetGenomicRangesFromFeatures History
< 1 sec
Successful EnsemblCdsTest testGetIdentifyingFeatures History
< 1 sec
Successful EnsemblCdsTest testIsValidReference History
< 1 sec
Successful EnsemblCdsTest testRetainFeature History
< 1 sec
Successful EnsemblGeneTest testGetFeatureColourScheme History
< 1 sec
Successful EnsemblGeneTest testGetGenomicRangesFromFeatures History
< 1 sec
Successful EnsemblGeneTest testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrand History
< 1 sec
Successful EnsemblGeneTest testGetIdentifyingFeatures History
< 1 sec
Successful EnsemblGeneTest testGetTranscriptFeatures History
< 1 sec
Successful EnsemblGeneTest testRetainFeature History
< 1 sec
Successful EnsemblGenomeTest testGetGenomicRangesFromFeatures History
< 1 sec
Successful EnsemblGenomeTest testGetIdentifyingFeatures History
< 1 sec
Successful EnsemblGenomeTest testRetainFeature History
< 1 sec
Successful EnsemblProteinTest testGetAccesionIdFromQuery History
< 1 sec
Successful EnsemblProteinTest testIsValidReference History
< 1 sec
Successful EnsemblSeqProxyTest getGenomicRangesFromFeatures History
< 1 sec
Successful EnsemblSeqProxyTest testReverseComplementAllele History
< 1 sec
Successful EnsemblSeqProxyTest testReverseComplementAlleles History
< 1 sec
Successful EnsemblXrefTest testGetCrossReferences History
< 1 sec
Successful TestHtsContigDb testCreateFastaSequenceIndex History
< 1 sec
Successful TestHtsContigDb testGetSequenceProxy History
< 1 sec
Successful TestHtsContigDb testGetSequenceProxy_indexed History
< 1 sec
Successful VCFReaderTest testQuery_plain History
< 1 sec
Successful VCFReaderTest testReadVcf_plain History
< 1 sec
Successful JmolCommandsTest testColourByChain History
< 1 sec
Successful JmolCommandsTest testColourByCharge History
< 1 sec
Successful JmolCommandsTest testColourBySequence History
< 1 sec
Successful JmolCommandsTest testFocusView History
< 1 sec
Successful JmolCommandsTest testGetAtomSpec History
< 1 sec
Successful JmolCommandsTest testGetColourBySequenceCommands_hiddenColumns History
< 1 sec
Successful JmolCommandsTest testGetModelStartNo History
< 1 sec
Successful JmolCommandsTest testLoadFile History
< 1 sec
Successful JmolCommandsTest testOpenSession History
< 1 sec
Successful JmolCommandsTest testSaveSession History
< 1 sec
Successful JmolCommandsTest testSetBackgroundColour History
< 1 sec
Successful JmolCommandsTest testShowBackbone History
< 1 sec
Successful JmolCommandsTest testSuperposeStructures History
< 1 sec
Successful JmolParserTest testAlignmentLoader History
1 sec
Successful JmolParserTest testFileParser History
< 1 sec
Successful JmolParserTest testLocalPDBId History
< 1 sec
Successful JmolParserTest testParse_alternativeResidues History
< 1 sec
Successful JmolParserTest testParse_missingResidues History
< 1 sec
Successful JmolParserTest testSetSecondaryStructure History
< 1 sec
Successful JmolViewerTest testAddStrToSingleSeqViewJMol History
2 secs
Successful JmolViewerTest testSingleSeqViewJMol History
< 1 sec
Successful PymolCommandsTest testCloseViewer History
< 1 sec
Successful PymolCommandsTest testColourByChain History
< 1 sec
Successful PymolCommandsTest testColourByCharge History
< 1 sec
Successful PymolCommandsTest testColourBySequence History
< 1 sec
Successful PymolCommandsTest testColourResidues History
< 1 sec
Successful PymolCommandsTest testGetAtomSpec History
< 1 sec
Successful PymolCommandsTest testGetAtomSpec_alphaOnly History
< 1 sec
Successful PymolCommandsTest testGetModelStartNo History
< 1 sec
Successful PymolCommandsTest testGetResidueSpec History
< 1 sec
Successful PymolCommandsTest testLoadFile History
< 1 sec
Successful PymolCommandsTest testOpenCommandFile History
< 1 sec
Successful PymolCommandsTest testOpenSession History
< 1 sec
Successful PymolCommandsTest testSaveSession History
< 1 sec
Successful PymolCommandsTest testSetAttribute History
< 1 sec
Successful PymolCommandsTest testSetAttributes History
< 1 sec
Successful PymolCommandsTest testSetBackgroundColour History
< 1 sec
Successful PymolCommandsTest testShowBackbone History
< 1 sec
Successful PymolCommandsTest testSuperposeStructures History
< 1 sec
Successful PymolManagerTest testGetPostRequest History
< 1 sec
Successful PymolManagerTest testGetPymolPaths History
< 1 sec
Successful ChimeraCommandsTest testCloseViewer History
< 1 sec
Successful ChimeraCommandsTest testColourByChain History
< 1 sec
Successful ChimeraCommandsTest testColourByCharge History
< 1 sec
Successful ChimeraCommandsTest testColourBySequence History
< 1 sec
Successful ChimeraCommandsTest testFocusView History
< 1 sec
Successful ChimeraCommandsTest testGetAtomSpec History
< 1 sec
Successful ChimeraCommandsTest testGetAtomSpec_alphaOnly History
< 1 sec
Successful ChimeraCommandsTest testGetColourCommand History
< 1 sec
Successful ChimeraCommandsTest testGetModelStartNo History
< 1 sec
Successful ChimeraCommandsTest testGetResidueAttributes History
< 1 sec
Successful ChimeraCommandsTest testGetResidueSpec History
< 1 sec
Successful ChimeraCommandsTest testGetSelectedResidues History
< 1 sec
Successful ChimeraCommandsTest testListResidueAttributes History
< 1 sec
Successful ChimeraCommandsTest testLoadFile History
< 1 sec
Successful ChimeraCommandsTest testMakeAttributeName History
< 1 sec
Successful ChimeraCommandsTest testOpenCommandFile History
< 1 sec
Successful ChimeraCommandsTest testOpenSession History
< 1 sec
Successful ChimeraCommandsTest testSaveSession History
< 1 sec
Successful ChimeraCommandsTest testSetAttribute History
< 1 sec
Successful ChimeraCommandsTest testSetAttributes History
< 1 sec
Successful ChimeraCommandsTest testSetBackgroundColour History
< 1 sec
Successful ChimeraCommandsTest testShowBackbone History
< 1 sec
Successful ChimeraCommandsTest testStartNotifications History
< 1 sec
Successful ChimeraCommandsTest testStopNotifications History
< 1 sec
Successful ChimeraCommandsTest testSuperposeStructures History
< 1 sec
Successful ChimeraXCommandsTest testCloseViewer History
< 1 sec
Successful ChimeraXCommandsTest testColourByChain History
< 1 sec
Successful ChimeraXCommandsTest testColourByCharge History
< 1 sec
Successful ChimeraXCommandsTest testColourBySequence History
< 1 sec
Successful ChimeraXCommandsTest testFocusView History
< 1 sec
Successful ChimeraXCommandsTest testGetAtomSpec History
< 1 sec
Successful ChimeraXCommandsTest testGetAtomSpec_alphaOnly History
< 1 sec
Successful ChimeraXCommandsTest testGetColourCommand History
< 1 sec
Successful ChimeraXCommandsTest testGetModelStartNo History
< 1 sec
Successful ChimeraXCommandsTest testGetResidueSpec History
< 1 sec
Successful ChimeraXCommandsTest testGetSelectedResidues History
< 1 sec
Successful ChimeraXCommandsTest testListResidueAttributes History
< 1 sec
Successful ChimeraXCommandsTest testOpenCommandFile History
< 1 sec
Successful ChimeraXCommandsTest testOpenSession History
< 1 sec
Successful ChimeraXCommandsTest testSaveSession History
< 1 sec
Successful ChimeraXCommandsTest testSetAttribute History
< 1 sec
Successful ChimeraXCommandsTest testSetAttributes History
< 1 sec
Successful ChimeraXCommandsTest testSetBackgroundColour History
< 1 sec
Successful ChimeraXCommandsTest testShowBackbone History
< 1 sec
Successful ChimeraXCommandsTest testStartNotifications History
< 1 sec
Successful ChimeraXCommandsTest testStopNotifications History
< 1 sec
Successful ChimeraXCommandsTest testSuperposeStructures History
< 1 sec
Successful SequenceOntologyTest testIsA History
< 1 sec
Successful SequenceOntologyTest testIsCDS History
< 1 sec
Successful SequenceOntologyTest testIsSequenceVariant History
< 1 sec
Successful FTSRestClientTest coverageForEqualsAndHashFunction History
< 1 sec
Successful FTSRestClientTest coverageForExceptionBranches History
< 1 sec
Successful FTSRestClientTest coverageForMiscellaneousBranches History
< 1 sec
Successful FTSRestClientTest getAllDefaulDisplayedDataColumns History
< 1 sec
Successful FTSRestClientTest getAllFTSDataColumns History
< 1 sec
Successful FTSRestClientTest getColumnClassTest History
< 1 sec
Successful FTSRestClientTest getColumnMaxWidthTest History
< 1 sec
Successful FTSRestClientTest getColumnMinWidthTest History
< 1 sec
Successful FTSRestClientTest getColumnPreferredWidthTest History
< 1 sec
Successful FTSRestClientTest getDataColumnByNameOrCode History
< 1 sec
Successful FTSRestClientTest getDataColumnGroupById History
< 1 sec
Successful FTSRestClientTest getDataColumnsFieldsAsCommaDelimitedString History
< 1 sec
Successful FTSRestClientTest getDefaultResponsePageSize History
< 1 sec
Successful FTSRestClientTest getPrimaryKeyColumIndexTest History
< 1 sec
Successful FTSRestClientTest getPrimaryKeyColumn History
< 1 sec
Successful FTSRestClientTest getSearchableDataColumns History
< 1 sec
Successful PDBFTSPanelTest populateCmbSearchTargetOptionsTest History
< 1 sec
Successful PDBFTSPanelTest testDecodeSearchTerm History
< 1 sec
Successful PDBFTSPanelTest testgetPDBIdwithSpecifiedChain History
< 1 sec
Successful PDBFTSRestClientTest getPDBDocFieldsAsCommaDelimitedStringTest History
< 1 sec
Successful PDBFTSRestClientTest getPDBIdColumIndexTest History
< 1 sec
Successful TDBeaconsFTSRestClientTest coverageForEqualsAndHashFunction History
< 1 sec
Successful TDBeaconsFTSRestClientTest getAllFTSDataColumns History
< 1 sec
Successful TDBeaconsFTSRestClientTest getColumnClassTest History
< 1 sec
Successful TDBeaconsFTSRestClientTest getColumnMinWidthTest History
< 1 sec
Successful TDBeaconsFTSRestClientTest getDataColumnByNameOrCode History
< 1 sec
Successful TDBeaconsFTSRestClientTest getDataColumnGroupById History
< 1 sec
Successful TDBeaconsFTSRestClientTest getDataColumnsFieldsAsCommaDelimitedString History
< 1 sec
Successful TDBeaconsFTSRestClientTest getDefaultResponsePageSize History
< 1 sec
Successful TDBeaconsFTSRestClientTest getPrimaryKeyColumIndexTest History
< 1 sec
Successful TDBeaconsFTSRestClientTest getPrimaryKeyColumn History
< 1 sec
Successful TDBeaconsFTSRestClientTest getSearchableDataColumns History
< 1 sec
Successful TDBeaconsFTSRestClientTest getTDBIdColumIndexTest History
< 1 sec
Successful TDBeaconsFTSRestClientTest testMockTDBRequest History
< 1 sec
Successful TDBeaconsPanelTest populateCmbSearchTargetOptionsTest History
< 1 sec
Successful AlignFrameTest testChangeColour_background_groupsAndThresholds History
< 1 sec
Successful AlignFrameTest testColourThresholdActions History
< 1 sec
Successful AlignFrameTest testHideFeatureColumns History
< 1 sec
Successful AlignFrameTest testNewView_colourThresholds History
< 1 sec
Successful AlignFrameTest testNewView_dsRefPreserved History
< 1 sec
Successful AlignViewportTest testDeregisterMapping_onCloseView History
< 1 sec
Successful AlignViewportTest testDeregisterMapping_withNoReference History
< 1 sec
Successful AlignViewportTest testDeregisterMapping_withReference History
< 1 sec
Successful AlignViewportTest testGetConsensusSeq History
< 1 sec
Successful AlignViewportTest testHideRevealSequences History
< 1 sec
Successful AlignViewportTest testSetGetHasSearchResults History
< 1 sec
Successful AlignViewportTest testSetGlobalColourScheme History
< 1 sec
Successful AlignViewportTest testSetSelectionGroup History
< 1 sec
Successful AlignViewportTest testShowOrDontShowOccupancy History
< 1 sec
Successful AlignViewportTest testUpdateConservation_qualityOnly History
< 1 sec
Successful AlignmentPanelTest testCalculateIdWidth_noArgs History
< 1 sec
Successful AlignmentPanelTest testCalculateIdWidth_withMaxWidth History
< 1 sec
Successful AlignmentPanelTest testSetScrollValues History
< 1 sec
Successful AlignmentPanelTest testUpdateLayout_endRes History
< 1 sec
Successful AnnotationChooserTest testBuildActionButtonsPanel History
< 1 sec
Successful AnnotationChooserTest testBuildApplyToOptionsPanel_noSelectionGroup History
< 1 sec
Successful AnnotationChooserTest testBuildApplyToOptionsPanel_withSelectionGroup History
< 1 sec
Successful AnnotationChooserTest testBuildShowHideOptionsPanel History
< 1 sec
Successful AnnotationChooserTest testBuildShowHidePanel History
< 1 sec
Successful AnnotationChooserTest testDeselectType_hideForAll History
< 1 sec
Successful AnnotationChooserTest testDeselectType_hideForSelected History
< 1 sec
Successful AnnotationChooserTest testDeselectType_showForAll History
< 1 sec
Successful AnnotationChooserTest testDeselectType_showForSelected History
< 1 sec
Successful AnnotationChooserTest testGetAnnotationTypes History
< 1 sec
Successful AnnotationChooserTest testIsInActionScope_selectedScope History
< 1 sec
Successful AnnotationChooserTest testIsInActionScope_unselectedScope History
< 1 sec
Successful AnnotationChooserTest testResetOriginalState History
< 1 sec
Successful AnnotationChooserTest testSelectType_hideForAll History
< 1 sec
Successful AnnotationChooserTest testSelectType_hideForSelected History
< 1 sec
Successful AnnotationChooserTest testSelectType_showForAll History
< 1 sec
Successful AnnotationChooserTest testSelectType_showForSelected History
< 1 sec
Successful AnnotationColumnChooserTest testReset History
< 1 sec
Successful AnnotationLabelsTest testGetStatusMessage History
< 1 sec
Successful AnnotationLabelsTest testGetTooltip History
< 1 sec
Successful AnnotationPanelTest testGetRowIndex History
< 1 sec
Successful AnnotationRowFilterTest testGetAnnotationItems History
< 1 sec
Successful AppVarnaTest testReplaceOddGaps History
< 1 sec
Successful CalculationChooserTest testGetApplicableScoreModels History
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Successful ColourMenuHelperTest testAddMenuItems_forAlignFrame History
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Successful ColourMenuHelperTest testAddMenuItems_nucleotide History
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Successful ColourMenuHelperTest testAddMenuItems_peptide History
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Successful ColourMenuHelperTest testAddMenuItems_simpleOnly History
< 1 sec
Successful FeatureSettingsTest testGetColorTooltip History
< 1 sec
Successful FeatureSettingsTest testSaveLoad History
< 1 sec
Successful HelpTest checkHelpTargets History
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Successful JvOptionPaneTest showConfirmDialogFamilyTest History
< 1 sec
Successful JvOptionPaneTest showInputDialogFamilyTest History
< 1 sec
Successful JvOptionPaneTest showInternalConfirmDialogFamilyTest History
< 1 sec
Successful JvOptionPaneTest showInternalMessageDialogFamilyTest History
< 1 sec
Successful JvOptionPaneTest showMessageDialogFamilyTest History
< 1 sec
Successful JvSwingUtilsTest testGetScrollBarProportion History
< 1 sec
Successful JvSwingUtilsTest testGetScrollValueForProportion History
< 1 sec
Successful JvSwingUtilsTest testWrapTooltip_longText History
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Successful JvSwingUtilsTest testWrapTooltip_multilineShortText History
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Successful JvSwingUtilsTest testWrapTooltip_shortText History
< 1 sec
Successful PaintRefresherTest testGetAssociatedPanels History
< 1 sec
Successful PaintRefresherTest testRegister History
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Successful PaintRefresherTest testRemoveComponent History
< 1 sec
Successful PairwiseAlignmentPanelTest testConstructor_noSelectionGroup History
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Successful PairwiseAlignmentPanelTest testConstructor_withSelectionGroup History
< 1 sec
Successful PopupMenuTest testAddFeatureDetails History
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Successful PopupMenuTest testAddFeatureDetails_linkedFeatures History
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Successful PopupMenuTest testBuildAnnotationTypesMenus History
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Successful PopupMenuTest testBuildAnnotationTypesMenus_hideDisabled History
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Successful PopupMenuTest testBuildAnnotationTypesMenus_showDisabled History
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Successful PopupMenuTest testBuildLinkMenu History
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Successful PopupMenuTest testConfigureReferenceAnnotationsMenu History
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Successful PopupMenuTest testConfigureReferenceAnnotationsMenu_alreadyAdded History
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Successful PopupMenuTest testConfigureReferenceAnnotationsMenu_noReferenceAnnotations History
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Successful PopupMenuTest testConfigureReferenceAnnotationsMenu_noSequenceSelected History
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Successful PopupMenuTest testConfigureReferenceAnnotationsMenu_notOnAlignment History
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Successful PopupMenuTest testConfigureReferenceAnnotationsMenu_twoViews History
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Successful PopupMenuTest testHideInsertions History
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Successful ProgressBarTest testConstructor_prematureInstantiation History
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Successful ProgressBarTest testConstructor_wrongLayout History
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Successful ProgressBarTest testSetProgressBar History
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Successful ScalePanelTest testBuildPopupMenu History
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Successful ScalePanelTest testPreventNegativeStartColumn History
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Successful ScalePanelTest testSelectColumns_withHidden History
< 1 sec
Successful SeqCanvasTest testCalculateWrappedGeometry_noAnnotations History
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Successful SeqCanvasTest testCalculateWrappedGeometry_withAnnotations History
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Successful SeqCanvasTest testClear_HighlightAndSelection History
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Successful SeqPanelTest testAmbiguousAminoAcidGetsStatusMessage History
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Successful SeqPanelTest testFindColumn_unwrapped History
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Successful SeqPanelTest testFindColumn_wrapped History
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Successful SeqPanelTest testFindMousePosition_wrapped_annotations History
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Successful SeqPanelTest testFindMousePosition_wrapped_noAnnotations History
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Successful SeqPanelTest testFindMousePosition_wrapped_scaleAbove History
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Successful SeqPanelTest testFindMousePosition_wrapped_scales_longSequence History
< 1 sec
Successful SeqPanelTest testGetEditStatusMessage History
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Successful SeqPanelTest testGetEditStatusMessage_lockedEditing History
< 1 sec
Successful SeqPanelTest testSetStatusReturnsNearestResiduePosition History
< 1 sec
Successful SequenceRendererTest testGetResidueColour_WithGroup History
< 1 sec
Successful StructureChooserTest displayTDBQueryTest History
< 1 sec
Successful StructureChooserTest fetchStructuresInfoMockedTest History
< 1 sec
Successful StructureChooserTest populateFilterComboBoxTest History
< 1 sec
Successful StructureChooserTest sanitizeSeqNameTest History
< 1 sec
Successful StructureViewerTest testGetSequencesForPdbs History
< 1 sec
Successful StructureChooserQuerySourceTest buildPDBQueryTest History
< 1 sec
Successful StructureChooserQuerySourceTest buildThreeDBQueryTest History
< 1 sec
Successful StructureChooserQuerySourceTest cascadingThreeDBandPDBQuerys(FER1_MAIZE) History
< 1 sec
Successful StructureChooserQuerySourceTest cascadingThreeDBandPDBQuerys(INS_HUMAN) History
< 1 sec
Successful StructureChooserQuerySourceTest cascadingThreeDBandPDBQuerys(P38398) History
< 1 sec
Successful StructureChooserQuerySourceTest cascadingThreeDBandPDBQuerys(R1AB_SARS2) History
2 secs
Successful StructureChooserQuerySourceTest sanitizeSeqNameTest History
< 1 sec
Successful AnnotatedPDBFileInputTest checkAnnotationWiring History
< 1 sec
Successful AnnotatedPDBFileInputTest checkNoDuplicates History
< 1 sec
Successful AnnotatedPDBFileInputTest checkPDBSequenceFeatures History
< 1 sec
Successful AnnotatedPDBFileInputTest testJalviewProjectRelocationAnnotation History
< 1 sec
Successful AnnotationFileIOTest exampleAnnotationFileIO History
< 1 sec
Successful AnnotationFileIOTest testAnnotateAlignmentView History
< 1 sec
Successful BackupFilesTest backupsEnabledNoRollMaxTest History
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Successful BackupFilesTest backupsEnabledReverseRollMaxTest History
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Successful BackupFilesTest backupsEnabledRollMaxTest History
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Successful BackupFilesTest backupsEnabledSingleFileBackupTest History
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Successful BackupFilesTest noBackupsEnabledTest History
< 1 sec
Successful BioJsHTMLOutputTest expectedNullPointerException History
< 1 sec
Successful BioJsHTMLOutputTest getBioJsMSAVersions History
< 1 sec
Successful BioJsHTMLOutputTest getJalviewAlignmentAsJsonString History
3 secs
Successful ClustalFileTest testParse_noNumbering History
< 1 sec
Successful ClustalFileTest testParse_withNumbering History
< 1 sec
Successful CrossRef2xmlTests openCrossrefsForEnsemblTwice History
11 secs
Successful EmblFlatFileTest testAdjustForProteinLength History
< 1 sec
Successful EmblFlatFileTest testParse History
< 1 sec
Successful EmblFlatFileTest testParseToRNA History
< 1 sec
Successful EmblFlatFileTest testParse_codonStartNot1 History
< 1 sec
Successful EmblFlatFileTest testParse_noUniprotXref History
< 1 sec
Successful EmblFlatFileTest testRemoveQuotes History
< 1 sec
Successful FeaturesFileTest readGff3File History
< 1 sec
Successful FeaturesFileTest simpleGff3FileClass History
< 1 sec
Successful FeaturesFileTest simpleGff3FileLoader History
< 1 sec
Successful FeaturesFileTest simpleGff3RelaxedIdMatching History
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Successful FeaturesFileTest testOutputFeatureFilters History
< 1 sec
Successful FeaturesFileTest testParse History
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Successful FeaturesFileTest testParseFilters History
< 1 sec
Successful FeaturesFileTest testParse_jalviewFeaturesOnly History
< 1 sec
Successful FeaturesFileTest testParse_mixedJalviewGff History
< 1 sec
Successful FeaturesFileTest testParse_pureGff3 History
< 1 sec
Successful FeaturesFileTest testPrintGffFormat History
< 1 sec
Successful FeaturesFileTest testPrintGffFormat_withFilters History
< 1 sec
Successful FeaturesFileTest testPrintJalviewFormat History
< 1 sec
Successful FeaturesFileTest testPrintJalviewFormat_withFilters History
< 1 sec
Successful FileFormatsTest testDeregisterFileFormat History
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Successful FileFormatsTest testForName History
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Successful FileFormatsTest testGetFormats History
< 1 sec
Successful FileFormatsTest testGetReadableFormats History
< 1 sec
Successful FileFormatsTest testGetWritableFormats History
< 1 sec
Successful FileFormatsTest testIsIdentifiable History
< 1 sec
Successful FileFormatsTest testRegisterFileFormat History
< 1 sec
Successful FileIOTester testGzipIo History
< 1 sec
Successful FileIOTester testGziplocalFileIO History
< 1 sec
Successful FileIOTester testIsGzipInputStream History
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Successful FileIOTester testNonGzipURLIO History
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Successful FileIOTester testNonGziplocalFileIO History
< 1 sec
Successful FileIOTester testStarsInFasta1 History
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Successful FileIOTester testStarsInFasta2 History
< 1 sec
Successful FormatAdapterTest testRoundTrip(AMSA) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(BLC) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Clustal) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Fasta) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Json) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(MSF) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(PIR) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Pfam) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Phylip) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Pileup) History
< 1 sec
Successful FormatAdapterTest testRoundTrip(Stockholm) History
< 1 sec
Successful GenBankFileTest testParse History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/2GIS.pdb, PDB) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/RF00031_folded.stk, Stockholm) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/dna_interleaved.phy, Phylip) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/example.json, Json) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/exampleFeatures.txt, Features) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/plantfdx.fa, Fasta) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316, Fasta) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/simpleGff3.gff, Features) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.aln, Clustal) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.blc, BLC) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.cif, MMCif) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.html, Html) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.jvp, Jalview) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.msf, MSF) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.pfam, Pfam) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.pileup, Pileup) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.pir, PIR) History
< 1 sec
Successful IdentifyFileTest testIdentify(examples/testdata/test.rnaml, Rnaml) History
< 1 sec
Successful IdentifyFileTest testIdentify(resources/scoreModel/blosum80.scm, ScoreMatrix) History
< 1 sec
Successful IdentifyFileTest testIdentify(resources/scoreModel/pam250.scm, ScoreMatrix) History
< 1 sec
Successful IdentifyFileTest testIdentify(test/jalview/io/J03321.embl.txt, Embl) History
< 1 sec
Successful IdentifyFileTest testIdentify(test/jalview/io/J03321.gb, GenBank) History
< 1 sec
Successful IdentifyFileTest testIdentify_featureFile History
< 1 sec
Successful IdentifyFileTest testLooksLikeFeatureData History
< 1 sec
Successful JSONFileTest colorSchemeTest History
< 1 sec
Successful JSONFileTest hiddenColsTest History
< 1 sec
Successful JSONFileTest hiddenSeqsTest History
< 1 sec
Successful JSONFileTest isShowSeqFeaturesSet History
< 1 sec
Successful JSONFileTest roundTripTest History
< 1 sec
Successful JSONFileTest testAnnotationParsed History
< 1 sec
Successful JSONFileTest testBioJSONRoundTripWithColourSchemeNone History
< 1 sec
Successful JSONFileTest testGrpParsed History
< 1 sec
Successful JSONFileTest testGrpParsed_colourNone History
< 1 sec
Successful JSONFileTest testSeqParsed History
< 1 sec
Successful JalviewExportPropertiesTests testImportExportPeriodGaps History
< 1 sec
Successful JalviewFileViewTest testGetExtension History
< 1 sec
Successful JalviewFileViewTest testGetImageIcon History
< 1 sec
Successful JalviewFileViewTest testGetTypeDescription History
< 1 sec
Successful NewickFileTests testTreeIO History
< 1 sec
Successful PfamFormatInputTest testPfamFormatNoLimits History
< 1 sec
Successful PfamFormatInputTest testPfamFormatValidLimits History
< 1 sec
Successful PhylipFileTests testInterleavedDataExtraction History
< 1 sec
Successful PhylipFileTests testInterleavedIO History
< 1 sec
Successful PhylipFileTests testSequentialDataExtraction History
< 1 sec
Successful PhylipFileTests testSequentialIO History
< 1 sec
Successful RNAMLfileTest testRnamlToStockholmIO History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaIndexBlosum80 History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaindexFormat History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaindex_extraDataLines History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaindex_mMissing History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaindex_rowColMismatch History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaindex_tooFewColumns History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_aaindex_tooManyRows History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_headerMissing History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiBadDelimiter History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiBadFloat History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiBadGuideCharacter History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiFormat History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiHeaderRepeated History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiMixedDelimiters History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiNameMissing History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiNotEnoughColumns History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiNotEnoughRows History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiTooManyColumns History
< 1 sec
Successful ScoreMatrixFileTest testParseMatrix_ncbiTooManyRows History
< 1 sec
Successful ScoreMatrixFileTest testParse_ncbiFormat History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_DescEqualsType History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_colouredByAttribute History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_disulfideBond History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_noScore History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_status History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_stripHtml History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_virtualFeature History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_withScore History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeature_withScoreStatusAttribute History
< 1 sec
Successful SequenceAnnotationReportTest testAppendFeatures_longText History
< 1 sec
Successful SequenceAnnotationReportTest testCreateSequenceAnnotationReport History
< 1 sec
Successful SequenceAnnotationReportTest testCreateSequenceAnnotationReport_withEllipsis History
< 1 sec
Successful StockholmFileTest curlyWUSSsecondaryStructureForRNASequence History
< 1 sec
Successful StockholmFileTest dbrefOutput History
< 1 sec
Successful StockholmFileTest detectWussBrackets History
< 1 sec
Successful StockholmFileTest fullWUSSsecondaryStructureForRNASequence History
< 1 sec
Successful StockholmFileTest pfamFileDataExtraction History
< 1 sec
Successful StockholmFileTest pfamFileIO History
< 1 sec
Successful StockholmFileTest rfamFileIO History
< 1 sec
Successful StockholmFileTest secondaryStructureForRNASequence History
< 1 sec
Successful StockholmFileTest stockholmFileRnaSSAlphaChars History
< 1 sec
Successful StockholmFileTest stockholmFileRnaSSSpaceChars History
< 1 sec
Successful StockholmFileTest testAnnotationEquivalence History
< 1 sec
Successful TCoffeeScoreFileTest testGetAsArray History
< 1 sec
Successful TCoffeeScoreFileTest testGetAsList History
< 1 sec
Successful TCoffeeScoreFileTest testHeightAndWidth History
< 1 sec
Successful TCoffeeScoreFileTest testHeightAndWidthWithResidueNumbers History
< 1 sec
Successful TCoffeeScoreFileTest testParse History
< 1 sec
Successful TCoffeeScoreFileTest testReadBlock History
< 1 sec
Successful TCoffeeScoreFileTest testReadHeader History
< 1 sec
Successful TCoffeeScoreFileTest testWrongFile History
< 1 sec
Successful WindowsFileLoadAndSaveTest loadAndSaveAlignment History
< 1 sec
Successful AppCacheTest appCacheLimitTest History
< 1 sec
Successful AppCacheTest appCacheTest History
< 1 sec
Successful JvCacheableInputBoxTest getUserInputTest History
< 1 sec
Successful JvCacheableInputBoxTest updateCacheTest History
< 1 sec
Successful ExonerateHelperTest testAddExonerateGffToAlignment History
< 1 sec
Successful ExonerateHelperTest testGetMappingType History
< 1 sec
Successful ExonerateHelperTest testProcessGffSimilarity_protein2dna_forward_querygff History
< 1 sec
Successful ExonerateHelperTest testProcessGffSimilarity_protein2dna_forward_targetgff History
< 1 sec
Successful ExonerateHelperTest testProcessGffSimilarity_protein2dna_reverse_querygff History
< 1 sec
Successful ExonerateHelperTest testProcessGffSimilarity_protein2dna_reverse_targetgff History
< 1 sec
Successful Gff3HelperTest testGetDescription History
< 1 sec
Successful Gff3HelperTest testProcessCdnaMatch_forwardToForward History
< 1 sec
Successful Gff3HelperTest testProcessCdnaMatch_forwardToReverse History
< 1 sec
Successful Gff3HelperTest testProcessCdnaMatch_reverseToForward History
< 1 sec
Successful Gff3HelperTest testProcessCdnaMatch_spliced History
< 1 sec
Successful GffHelperBaseTest testParseAttributeMap History
< 1 sec
Successful GffHelperBaseTest testParseNameValuePairs History
< 1 sec
Successful GffHelperBaseTest testTrimMapping History
< 1 sec
Successful GffHelperFactoryTest testGetHelper History
< 1 sec
Successful GffTests testResolveExonerateGff History
< 1 sec
Successful InterProScanHelperTest testProcessProteinMatch History
< 1 sec
Successful SequenceOntologyLiteTest testIsA_sequenceVariant History
< 1 sec
Successful VCFLoaderTest testDoLoad History
< 1 sec
Successful VCFLoaderTest testDoLoad_reverseStrand History
< 1 sec
Successful VCFLoaderTest testDoLoad_vepCsq History
< 1 sec
Successful VCFLoaderTest testLoadVCFContig History
< 1 sec
Successful MatrixTest testConstructor History
< 1 sec
Successful MatrixTest testCopy History
< 1 sec
Successful MatrixTest testEquals History
< 1 sec
Successful MatrixTest testFindMinMax History
< 1 sec
Successful MatrixTest testFindMinMax_timing History
< 1 sec
Successful MatrixTest testMultiply History
< 1 sec
Successful MatrixTest testPostMultiply History
< 1 sec
Successful MatrixTest testPreMultiply History
< 1 sec
Successful MatrixTest testPreMultiply_tooFewColumns History
< 1 sec
Successful MatrixTest testPreMultiply_tooManyColumns History
< 1 sec
Successful MatrixTest testReverseRange_maxToZero History
< 1 sec
Successful MatrixTest testReverseRange_swapMinMax History
< 1 sec
Successful MatrixTest testTred_reproducible History
< 1 sec
Successful RotatableMatrixTest testGetRotation History
< 1 sec
Successful RotatableMatrixTest testPreMultiply History
< 1 sec
Successful RotatableMatrixTest testPrint History
< 1 sec
Successful RotatableMatrixTest testVectorMultiply History
< 1 sec
Successful SparseMatrixTest testConstructor History
< 1 sec
Successful SparseMatrixTest testFillRatio History
< 1 sec
Successful SparseMatrixTest testPostMultiply History
< 1 sec
Successful SparseMatrixTest testPreMultiply History
< 1 sec
Successful SparseMatrixTest testPreMultiply_sparseProduct History
< 1 sec
Successful SparseMatrixTest testPreMultiply_tooFewColumns History
< 1 sec
Successful SparseMatrixTest testPreMultiply_tooManyColumns History
< 1 sec
Successful SparseMatrixTest testTqli_matchesMatrix History
< 1 sec
Successful SparseMatrixTest testTranspose History
< 1 sec
Successful SparseMatrixTest testTred_matchesMatrix History
< 1 sec
Successful SparseMatrixTest testTred_reproducible History
< 1 sec
Successful Jalview2xmlTests gatherViewsHere History
3 secs
Successful Jalview2xmlTests noDuplicatePdbMappingsMade History
2 secs
Successful Jalview2xmlTests testColourByAnnotScores History
< 1 sec
Successful Jalview2xmlTests testCopyViewSettings History
2 secs
Successful Jalview2xmlTests testIsVersionStringLaterThan History
< 1 sec
Successful Jalview2xmlTests testMergeDatasetsforManyViews History
< 1 sec
Successful Jalview2xmlTests testMergeDatasetsforViews History
< 1 sec
Successful Jalview2xmlTests testPcaViewAssociation History
< 1 sec
Successful Jalview2xmlTests testRNAStructureRecovery History
< 1 sec
Successful Jalview2xmlTests testSaveLoadFeatureColoursAndFilters History
< 1 sec
Successful Jalview2xmlTests testStoreAndRecoverColourThresholds History
< 1 sec
Successful Jalview2xmlTests testStoreAndRecoverExpandedviews History
6 secs
Successful Jalview2xmlTests testStoreAndRecoverGeneLocus History
< 1 sec
Successful Jalview2xmlTests testStoreAndRecoverGroupRepSeqs History
< 1 sec
Successful Jalview2xmlTests testStoreAndRecoverPDBEntry History
< 1 sec
Successful Jalview2xmlTests testStoreAndRecoverReferenceSeqSettings History
6 secs
Successful Jalview2xmlTests testTCoffeeScores History
< 1 sec
Successful Jalview2xmlTests viewRefPdbAnnotation History
2 secs
Successful OverviewResColourFinderTest testGetResidueBoxColour_none History
< 1 sec
Successful OverviewResColourFinderTest testGetResidueBoxColour_userdef History
< 1 sec
Successful OverviewResColourFinderTest testGetResidueBoxColour_zappo History
< 1 sec
Successful ResidueColourFinderTest testGetResidueColour_none History
< 1 sec
Successful ResidueColourFinderTest testGetResidueColour_userdef History
< 1 sec
Successful ResidueColourFinderTest testGetResidueColour_zappo History
< 1 sec
Successful ResidueShaderTest testAboveThreshold History
< 1 sec
Successful ResidueShaderTest testApplyConservation History
< 1 sec
Successful ResidueShaderTest testFindColour_gapColour History
< 1 sec
Successful ScaleRendererTest testCalculateMarks History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureAtEnd History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_contactFeature History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_featureGroupNotDisplayed History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_featureTypeNotDisplayed History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_gapPosition History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_graduatedFeatureColour History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_graduatedWithThreshold History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_multipleFeaturesAtPositionNoTransparency History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_nestedFeatures History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_noFeatures History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_noFeaturesShown History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_singleFeatureAtPosition History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_singleFeatureNotAtPosition History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_transparencySingleFeature History
< 1 sec
Successful FeatureColourFinderTest testFindFeatureColour_transparencyTwoFeatures History
< 1 sec
Successful FeatureColourFinderTest testNoFeaturesDisplayed History
< 1 sec
Successful FeatureRendererTest testFilterFeaturesForDisplay History
< 1 sec
Successful FeatureRendererTest testFindAllFeatures History
< 1 sec
Successful FeatureRendererTest testFindComplementFeaturesAtResidue History
< 1 sec
Successful FeatureRendererTest testFindFeaturesAtColumn History
< 1 sec
Successful FeatureRendererTest testGetColour History
< 1 sec
Successful FeatureRendererTest testIsVisible History
< 1 sec
Successful AnnotationColourGradientTest testFindColour_aboveThreshold History
< 1 sec
Successful AnnotationColourGradientTest testFindColour_belowThreshold History
< 1 sec
Successful AnnotationColourGradientTest testFindColour_noThreshold History
< 1 sec
Successful AnnotationColourGradientTest testFindColour_originalColours History
< 1 sec
Successful AnnotationColourGradientTest testShadeCalculation_aboveThreshold History
< 1 sec
Successful AnnotationColourGradientTest testShadeCalculation_belowThreshold History
< 1 sec
Successful AnnotationColourGradientTest testShadeCalculation_noThreshold History
< 1 sec
Successful Blosum62ColourSchemeTest testFindColour History
< 1 sec
Successful BuriedColourSchemeTest testFindColour History
< 1 sec
Successful ClustalxColourSchemeTest testFindColour History
< 1 sec
Successful ClustalxColourSchemeTest testFindColour_ignoreGaps History
< 1 sec
Successful ColourSchemePropertyTest testGetColourName History
< 1 sec
Successful ColourSchemePropertyTest testGetColourScheme History
< 1 sec
Successful ColourSchemesTest testGetColourScheme History
< 1 sec
Successful ColourSchemesTest testGetColourSchemes History
< 1 sec
Successful ColourSchemesTest testNameExists History
< 1 sec
Successful ColourSchemesTest testRegisterColourScheme History
< 1 sec
Successful FeatureColourTest testConstructors History
< 1 sec
Successful FeatureColourTest testCopyConstructor History
< 1 sec
Successful FeatureColourTest testGetColor_Graduated History
< 1 sec
Successful FeatureColourTest testGetColor_GraduatedByAttributeValue History
< 1 sec
Successful FeatureColourTest testGetColor_aboveBelowThreshold History
< 1 sec
Successful FeatureColourTest testGetColor_colourByAttributeText History
< 1 sec
Successful FeatureColourTest testGetColor_colourByLabel History
< 1 sec
Successful FeatureColourTest testGetColor_simpleColour History
< 1 sec
Successful FeatureColourTest testGetDescription History
< 1 sec
Successful FeatureColourTest testIsOutwithThreshold History
< 1 sec
Successful FeatureColourTest testParseJalviewFeatureColour History
< 1 sec
Successful FeatureColourTest testToJalviewFormat History
< 1 sec
Successful HelixColourSchemeTest testFindColour History
< 1 sec
Successful HydrophobicColourSchemeTest testFindColour History
< 1 sec
Successful JalviewColourSchemeTest testGetSchemeClass History
< 1 sec
Successful JalviewColourSchemeTest testToString History
< 1 sec
Successful PIDColourSchemeTest testFindColour History
< 1 sec
Successful PIDColourSchemeTest testFindColour_ignoreGaps History
< 1 sec
Successful ResidueColourSchemeTest testGetName History
< 1 sec
Successful ResidueColourSchemeTest testIsApplicableTo History
< 1 sec
Successful ResidueColourSchemeTest testIsApplicableTo_dynamicColourScheme History
< 1 sec
Successful ResiduePropertiesTest testCodonTranslate History
< 1 sec
Successful ResiduePropertiesTest testCodonTranslate_ambiguityCodes History
< 1 sec
Successful ResiduePropertiesTest testGetCanonicalAminoAcid History
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Successful ResiduePropertiesTest testGetDssp3State History
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Successful ResiduePropertiesTest testGetResidues_nucleotide History
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Successful ResiduePropertiesTest testGetResidues_peptide History
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Successful ResiduePropertiesTest testGetSingleCharacterCode History
< 1 sec
Successful ResiduePropertiesTest testPhysicoChemicalProperties History
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Successful StrandColourSchemeTest testFindColour History
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Successful TurnColourSchemeTest testFindColour History
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Successful UserColourSchemeTest testConstructor_coloursArray History
< 1 sec
Successful UserColourSchemeTest testParseAppletParameter History
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Successful UserColourSchemeTest testToAppletParameter History
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Successful AtomSpecModelTest testGetRanges History
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Successful Mapping compareTransferredToRefPDBAnnot History
1 sec
Successful Mapping mapFer1From3W5V History
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Successful StructureCommandTest testEquals History
< 1 sec
Successful StructureMappingTest testEquals History
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Successful StructureMappingTest testGetPDBResNumRanges History
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Successful StructureSelectionManagerTest testRegisterMapping History
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Successful StructureSelectionManagerTest testRegisterMappings History
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Successful StructureSelectionManagerTest testSetMapping_seqFeatures History
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Successful AAStructureBindingModelTest testBuildColoursMap History
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Successful AAStructureBindingModelTest testFindSuperposableResidues History
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Successful AAStructureBindingModelTest testFindSuperposableResidues_hiddenColumn History
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Successful AAStructureBindingModelTest testImportPDBPreservesChainMappings History
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Successful AppletUrlProviderFactoryTest testCreateUrlProvider History
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Successful CustomUrlProviderTest testDefaultUrl History
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Successful CustomUrlProviderTest testUrlLinks History
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Successful DesktopUrlProviderFactoryTest testCreateUrlProvider History
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Successful IdentifiersUrlProviderTest testDefaultUrl History
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Successful IdentifiersUrlProviderTest testUrlLinks History
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Successful UrlLinkDisplayTest getValue History
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Successful UrlLinkDisplayTest testDescription History
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Successful UrlLinkDisplayTest testDisplayColumnNames History
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Successful UrlLinkDisplayTest testGetSetValue History
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Successful UrlLinkDisplayTest testIsEditable History
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Successful UrlLinkDisplayTest testName History
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Successful UrlLinkDisplayTest testUrl History
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Successful UrlLinkTableModelTest testColumns History
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Successful UrlLinkTableModelTest testCounts History
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Successful UrlLinkTableModelTest testDeletable History
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Successful UrlLinkTableModelTest testEditable History
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Successful UrlLinkTableModelTest testInitialisation History
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Successful UrlLinkTableModelTest testRowDelete History
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Successful UrlLinkTableModelTest testRowEditable History
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Successful UrlLinkTableModelTest testRowInsert History
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Successful UrlLinkTableModelTest testValues History
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Successful UrlProviderTest testInitUrlProvider History
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Successful UrlProviderTest testSetDefaultUrl History
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Successful UrlProviderTest testSetDefaultUrlWrongly History
< 1 sec
Successful ArrayUtilsTest testReverseIntArray History
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Successful CaseInsensitiveStringTest testEquals History
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Successful CaseInsensitiveStringTest testHashcode History
< 1 sec
Successful ColorUtilsTest testBleachColour History
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Successful ColorUtilsTest testBrighterThan History
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Successful ColorUtilsTest testCreateColourFromName History
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Successful ColorUtilsTest testDarkerThan History
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Successful ColorUtilsTest testGetAWTColorFromName History
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Successful ColorUtilsTest testGetGraduatedColour History
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Successful ColorUtilsTest testParseColourString History
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Successful ColorUtilsTest testToTkCode History
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Successful ComparisonTest testIsGap History
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Successful ComparisonTest testIsNucleotide History
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Successful ComparisonTest testIsNucleotideSequence History
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Successful ComparisonTest testIsNucleotide_sequences History
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Successful ComparisonTest testIsSameResidue History
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Successful ComparisonTest testPID_includingGaps History
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Successful ComparisonTest testPID_ungappedOnly History
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Successful DBRefUtilsTest testGetCanonicalName History
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Successful DBRefUtilsTest testParseToDbRef History
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Successful DBRefUtilsTest testParseToDbRef_PDB History
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Successful DBRefUtilsTest testSearchRefs_accessionid History
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Successful DBRefUtilsTest testSearchRefs_noMapping History
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Successful DBRefUtilsTest testSearchRefs_wildcardAccessionid History
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Successful DBRefUtilsTest testSearchRefs_withMapping History
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Successful DBRefUtilsTest testSelectRefs History
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Successful DnaUtilsTest testParseLocation History
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Successful FormatTest testAppendPercentage History
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Successful FormatTest testForm_float History
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Successful FormatTest testFormat_scientific History
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Successful FormatTest testFormat_scientific_overflow History
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Successful FormatTest testRepeat History
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Successful JSONUtilsTest testArrayToList History
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Successful Log4jTest testLog4j History
1 sec
Successful MapListTest testAddMapList History
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Successful MapListTest testAddMapList_contiguous History
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Successful MapListTest testAddMapList_sameMap History
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Successful MapListTest testAddOffsetPositions History
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Successful MapListTest testAddRange History
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Successful MapListTest testCoalesceRanges History
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Successful MapListTest testConstructor History
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Successful MapListTest testConstructor_mergeRanges History
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Successful MapListTest testConstructor_withLists History
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Successful MapListTest testCountPositions History
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Successful MapListTest testEquals History
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Successful MapListTest testGetInverse History
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Successful MapListTest testGetMappedOffsetsForPositions History
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Successful MapListTest testGetOverlapsInFrom_withIntrons History
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Successful MapListTest testGetOverlapsInTo_withIntrons History
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Successful MapListTest testGetPositionsForOffsets History
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Successful MapListTest testGetRanges History
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Successful MapListTest testIsFromForwardStrand History
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Successful MapListTest testIsToForwardsStrand History
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Successful MapListTest testLocateInFrom_noIntrons History
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Successful MapListTest testLocateInFrom_reverseStrand History
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Successful MapListTest testLocateInFrom_withIntrons History
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Successful MapListTest testLocateInFrom_withOverlap History
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Successful MapListTest testLocateInTo_noIntrons History
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Successful MapListTest testLocateInTo_withIntrons History
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Successful MapListTest testLocateInTo_withOverlap History
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Successful MapListTest testToString History
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Successful MapListTest testTraverse History
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Successful MapListTest testTraverseToPosition History
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Successful MappingUtilsTest testBuildSearchResults History
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Successful MappingUtilsTest testBuildSearchResults_withIntron History
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Successful MappingUtilsTest testContains History
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Successful MappingUtilsTest testFindMappingsForSequence History
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Successful MappingUtilsTest testFindMappingsForSequenceAndOthers History
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Successful MappingUtilsTest testFindOverlap History
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Successful MappingUtilsTest testFlattenRanges History
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Successful MappingUtilsTest testFlattenRanges_reverseStrand History
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Successful MappingUtilsTest testGetLength History
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Successful MappingUtilsTest testMapColumnSelection_dnaToProtein History
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Successful MappingUtilsTest testMapColumnSelection_hiddenColumns History
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Successful MappingUtilsTest testMapColumnSelection_null History
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Successful MappingUtilsTest testMapColumnSelection_proteinToDna History
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Successful MappingUtilsTest testMapEditCommand History
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Successful MappingUtilsTest testMapSequenceGroup_columns History
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Successful MappingUtilsTest testMapSequenceGroup_region History
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Successful MappingUtilsTest testMapSequenceGroup_sequences History
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Successful MappingUtilsTest testMapSequenceGroup_sharedDataset History
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Successful MappingUtilsTest testRangeContains History
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Successful MappingUtilsTest testRemoveEndPositions History
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Successful MappingUtilsTest testRemoveStartPositions History
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Successful MappingUtilsTest testRemoveStartPositions_reverseStrand History
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Successful MathUtilsTest testGcd History
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Successful MessageManagerTest testFormatMessage_invalid History
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Successful MessageManagerTest testGetStringOrReturn History
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Successful MessageManagerTest testGetString_invalid History
< 1 sec
Successful ParseHtmlBodyAndLinksTest testParseHtml_noLinks History
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Successful ParseHtmlBodyAndLinksTest testParseHtml_withLinks History
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Successful ParseHtmlBodyAndLinksTest testParseHtml_withLinksWithEncoding History
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Successful ParseHtmlBodyAndLinksTest testParseHtml_withLinksWithParameters History
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Successful PlatformTest testEscapeBackslashes History
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Successful PlatformTest testIsControlDown_mac History
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Successful PlatformTest testIsControlDown_notMac History
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Successful PlatformTest testPathEquals History
< 1 sec
Successful QuickSortTest testCharSortByFloat History
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Successful QuickSortTest testCharSortByInt History
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Successful QuickSortTest testSortByInt History
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Successful QuickSortTest testSortByString History
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Successful QuickSortTest testSort_byDoubleValues History
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Successful QuickSortTest testSort_byFloatValues History
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Successful QuickSortTest testSort_byIntValues History
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Successful QuickSortTest testSort_byStringValues History
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Successful QuickSortTest testSort_charSortByFloat_mostlyZeroValues History
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Successful QuickSortTest testSort_charSortByInt_mostlyZeroValues History
< 1 sec
Successful SetUtilsTest testCountDisjunction History
< 1 sec
Successful ShiftListTest testParseMap History
< 1 sec
Successful SparseCountTest testAdd History
< 1 sec
Successful SparseCountTest testKeyAt_ValueAt History
< 1 sec
Successful SparseCountTest testOverflow History
< 1 sec
Successful SparseCountTest testPut History
< 1 sec
Successful SparseCountTest testUnderflow History
< 1 sec
Successful StringUtilsTest testArrayToSeparatorList History
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Successful StringUtilsTest testCompareVersions History
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Successful StringUtilsTest testDeleteChars History
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Successful StringUtilsTest testGetLastToken History
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Successful StringUtilsTest testInsertCharAt History
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Successful StringUtilsTest testListToDelimitedString History
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Successful StringUtilsTest testParseInt History
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Successful StringUtilsTest testSeparatorListToArray History
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Successful StringUtilsTest testStripHtmlTags History
< 1 sec
Successful StringUtilsTest testToSentenceCase History
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Successful StringUtilsTest testUrlDecode History
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Successful StringUtilsTest testUrlEncode History
< 1 sec
Successful UrlLinkTest testCreateLinksForNonDynamic History
< 1 sec
Successful UrlLinkTest testCreateLinksFromNullSequence History
< 1 sec
Successful UrlLinkTest testCreateLinksFromSequence History
< 1 sec
Successful UrlLinkTest testLinkComparator History
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Successful UrlLinkTest testLinksWithTargets History
< 1 sec
Successful UrlLinkTest testMakeUrlNoRegex History
< 1 sec
Successful UrlLinkTest testMakeUrlWithRegex History
< 1 sec
Successful UrlLinkTest testUrlLinkCreationNoRegex History
< 1 sec
Successful UrlLinkTest testUrlLinkCreationWithRegex History
< 1 sec
Successful ConditionTest testFromString History
< 1 sec
Successful ConditionTest testGetStableName History
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Successful ConditionTest testToString History
< 1 sec
Successful MatcherTest testConstructor History
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Successful MatcherTest testEquals History
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Successful MatcherTest testHashCode History
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Successful MatcherTest testMatches_float History
< 1 sec
Successful MatcherTest testMatches_floatValueIntegerCondition History
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Successful MatcherTest testMatches_floatWithStringCondition History
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Successful MatcherTest testMatches_long History
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Successful MatcherTest testMatches_pattern History
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Successful MatcherTest testNumericMatch_nullOrInvalidValue History
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Successful MatcherTest testToString History
< 1 sec
Successful OverviewDimensionsHideHiddenTest testConstructor History
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Successful OverviewDimensionsHideHiddenTest testDragging History
< 1 sec
Successful OverviewDimensionsHideHiddenTest testFromMouseWithHiddenColsAtEnd History
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Successful OverviewDimensionsHideHiddenTest testFromMouseWithHiddenColsAtStart History
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Successful OverviewDimensionsHideHiddenTest testFromMouseWithHiddenColsInMiddle History
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Successful OverviewDimensionsHideHiddenTest testFromMouseWithHiddenRowsAtEnd History
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Successful OverviewDimensionsHideHiddenTest testFromMouseWithHiddenRowsAtStart History
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Successful OverviewDimensionsHideHiddenTest testFromMouseWithHiddenRowsInMiddle History
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Successful OverviewDimensionsHideHiddenTest testPositionInBox History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromMouseClick History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewport History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewportHiddenColsAtEnd History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewportHiddenColsAtStart History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewportHiddenColsInMiddle History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewportHiddenRowsAtEnd History
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Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewportHiddenRowsAtStart History
< 1 sec
Successful OverviewDimensionsHideHiddenTest testSetBoxFromViewportHiddenRowsInMiddle History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testConstructor History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testDragging History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenColsAtEnd History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenColsAtStart History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenColsInMiddle History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenRowsAtEnd History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenRowsAtStart History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenRowsAtStartWrapped History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testFromMouseWithHiddenRowsInMiddle History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testPositionInBox History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromMouseClick History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewport History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewportHiddenColsAtEnd History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewportHiddenColsAtStart History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewportHiddenColsInMiddle History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewportHiddenRowsAtEnd History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewportHiddenRowsAtStart History
< 1 sec
Successful OverviewDimensionsShowHiddenTest testSetBoxFromViewportHiddenRowsInMiddle History
< 1 sec
Successful ViewportRangesTest testEventFiring History
< 1 sec
Successful ViewportRangesTest testGetAbsoluteAlignmentHeight History
< 1 sec
Successful ViewportRangesTest testGetAbsoluteAlignmentWidth History
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Successful ViewportRangesTest testGetWrappedMaxScroll History
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Successful ViewportRangesTest testGetWrappedScrollPosition History
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Successful ViewportRangesTest testPageUpDown History
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Successful ViewportRangesTest testPageUpDownWrapped History
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Successful ViewportRangesTest testScrollRight History
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Successful ViewportRangesTest testScrollRightWithHidden History
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Successful ViewportRangesTest testScrollToVisible History
< 1 sec
Successful ViewportRangesTest testScrollToWrappedVisible History
< 1 sec
Successful ViewportRangesTest testScrollUp History
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Successful ViewportRangesTest testScrollUpWithHidden History
< 1 sec
Successful ViewportRangesTest testScrollUp_wrapped History
< 1 sec
Successful ViewportRangesTest testSetEndSeq History
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Successful ViewportRangesTest testSetStartEndRes History
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Successful ViewportRangesTest testSetStartEndResWrapped History
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Successful ViewportRangesTest testSetStartEndSeq History
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Successful ViewportRangesTest testSetStartRes History
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Successful ViewportRangesTest testSetStartResAndSeq History
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Successful ViewportRangesTest testSetStartSeq History
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Successful ViewportRangesTest testSetViewportHeight History
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Successful ViewportRangesTest testSetViewportLocation History
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Successful ViewportRangesTest testSetViewportStartAndHeight History
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Successful ViewportRangesTest testSetViewportStartAndWidth History
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Successful ViewportRangesTest testSetViewportStartAndWidthWrapped History
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Successful ViewportRangesTest testSetViewportWidth History
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Successful ViewportRangesTest testViewportRanges History
< 1 sec
Successful ViewStyleTest testCopyConstructor History
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Successful ViewStyleTest testEquals History
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Successful AlignCalcManagerTest testRemoveWorkerForAnnotation History
< 1 sec
Successful SequenceFetcherTest testNoDuplicatesInFetchDbRefs History
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Successful EmblXmlSourceTest testAdjustForProteinLength History
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Successful EmblXmlSourceTest testGetCdsRanges History
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Successful EmblXmlSourceTest testGetEmblEntries History
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Successful EmblXmlSourceTest testGetSequence History
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Successful PfamFullTest testGetURL History
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Successful PfamSeedTest testGetURL History
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Successful RfamFullTest testGetURL History
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Successful RfamSeedTest testGetURL History
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Successful UniprotTest testGetDescription History
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Successful UniprotTest testGetUniprotEntries History
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Successful UniprotTest testGetUniprotEntryDescription History
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Successful UniprotTest testGetUniprotEntryId History
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Successful UniprotTest testGetUniprotSequence History
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Successful EBIFetchClientTest testBuildUrl History
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Successful EBIFetchClientTest testParseIds History
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Successful RestClientTest testGetRestClient History
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Successful ShmmrRSBSService testShmmrService History
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Successful ShmmrRSBSService testShmmrServiceDataprep History
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Successful DbRefFetcherTest testStandardProtDbs History
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Successful AtomTest testStringConstructor History
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Successful AtomTest testStringConstructor_blankOccupancyTempFactor History
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Successful AtomTest testStringConstructor_malformed History
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Successful BondTest testTranslate History
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Successful PDBChainTest testGetChargeColour History
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Successful PDBChainTest testGetNewlineString History
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Successful PDBChainTest testMakeBond History
< 1 sec
Successful PDBChainTest testMakeCaBondList History
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Successful PDBChainTest testMakeCaBondList_nucleotide History
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Successful PDBChainTest testMakeExactMapping History
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Successful PDBChainTest testMakeResidueList_noAnnotation History
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Successful PDBChainTest testMakeResidueList_withTempFactor History
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Successful PDBChainTest testPrint History
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Successful PDBChainTest testSetChainColours_colour History
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Successful PDBChainTest testSetChainColours_colourScheme History
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Successful PDBChainTest testSetChargeColours History
< 1 sec
Successful PDBfileTest testIsRna History
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Successful PDBfileTest testParse History
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Successful PDBfileTest testParse_withAnnotations_noSS History
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Successful PDBfileTest testParse_withJmolAddAlignmentAnnotations History
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Successful PDBfileTest testParse_withJmol_noAnnotations History
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Successful ResidueTest testFindAtom History
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