Build: #4 was successful
Job: Default Job was successful
Build log
The build generated 443 lines of output. Download or view full build log
| 07-Jul-2020 01:59:22 | Build Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows - Default Job #4 (JB-JGP14-JOB1-4) started building on agent Default Agent |
| 07-Jul-2020 01:59:22 | |
| 07-Jul-2020 01:59:22 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 |
| 07-Jul-2020 01:59:22 | Executing build Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows - Default Job #4 (JB-JGP14-JOB1-4) |
| 07-Jul-2020 01:59:22 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 07-Jul-2020 01:59:22 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 |
| 07-Jul-2020 01:59:22 | Updating source code to revision: 3db640482c218a4cc8919189fef1842424a0b9fd |
| 07-Jul-2020 01:59:22 | Fetching 'refs/heads/bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows' from 'http://source.jalview.org/git/jalview.git'. |
| 07-Jul-2020 01:59:23 | Checking out revision 3db640482c218a4cc8919189fef1842424a0b9fd. |
| 07-Jul-2020 01:59:25 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164 |
| 07-Jul-2020 01:59:25 | 06d91fe..3db6404 bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows -> origin/bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows |
| 07-Jul-2020 01:59:25 | * [new tag] Release_2_10_2b1 -> Release_2_10_2b1 |
| 07-Jul-2020 01:59:25 | * [new tag] Release_2_10_2b2 -> Release_2_10_2b2 |
| 07-Jul-2020 01:59:25 | * [new tag] Release_2_10_3 -> Release_2_10_3 |
| 07-Jul-2020 01:59:25 | * [new tag] Release_2_10_4b1 -> Release_2_10_4b1 |
| 07-Jul-2020 01:59:25 | * [new tag] Release_2_11_0 -> Release_2_11_0 |
| 07-Jul-2020 01:59:25 | Already on 'bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows' |
| 07-Jul-2020 01:59:25 | Your branch is behind 'origin/bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows' by 35 commits, and can be fast-forwarded. |
| 07-Jul-2020 01:59:25 | (use "git pull" to update your local branch) |
| 07-Jul-2020 01:59:25 | HEAD is now at 3db6404 JAL-3685 Fixed single quotes in formatMessage messages |
| 07-Jul-2020 01:59:25 | Updated source code to revision: 3db640482c218a4cc8919189fef1842424a0b9fd |
| 07-Jul-2020 01:59:25 | Finished task 'Checkout Default Repository' with result: Success |
| 07-Jul-2020 01:59:25 | Running pre-build action: VCS Version Collector |
| 07-Jul-2020 01:59:25 | Running pre-build action: Artifactory Release Staging |
| 07-Jul-2020 01:59:25 | Substituting variable: ${bamboo.planKey} with JB-JGP14 |
| 07-Jul-2020 01:59:25 | Starting task 'Jalview distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 07-Jul-2020 01:59:25 | Bamboo Artifactory Plugin version: 2.6.2 |
| 07-Jul-2020 01:59:25 | Beginning to execute external process for build 'Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows - Default Job #4 (JB-JGP14-JOB1-4)' ... running command line: /home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -PCHANNEL=BUILD -Pbamboo_planKey=JB-JGP14 clean makeDist shadowJar getdown installers ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_repository_revision_number=3db640482c218a4cc8919189fef1842424a0b9fd bamboo_resultsUrl=https://builds.jalview.org/browse/JB-JGP14-JOB1-4 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_24707116_name=Jalview Git bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-JGP14-JOB1 bamboo_capability_system_jdk_JDK_1_8_0_171=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_shortPlanName=bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_repository_24707116_revision_number=3db640482c218a4cc8919189fef1842424a0b9fd bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=4 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_capability_system_jdk_OpenJDK_11_JRE_only=/home/bamboo/buildtools/jvm/jre11_x64_linux bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-JGP14-JOB1-4 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_shortPlanKey=JGP14 bamboo_repository_24707116_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/OpenJDK11/jdk-11 bamboo_planRepository_revision=3db640482c218a4cc8919189fef1842424a0b9fd bamboo_buildTimeStamp=2020-07-07T01:59:22.449+01:00 bamboo_repository_previous_revision_number=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_repository_24707116_git_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_planRepository_previousRevision=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_repository_git_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_buildResultKey=JB-JGP14-JOB1-4 bamboo_repository_branch_name=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_buildPlanName=Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=3db640482c218a4cc8919189fef1842424a0b9fd SHLVL=1 bamboo_repository_24707116_previous_revision_number=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_repository_24707116_git_username= bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git JAVA_HOME=/home/bamboo/buildtools/OpenJDK11/jdk-11/ bamboo_dependenciesDisabled=false LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_planRepository_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_planRepository_branchDisplayName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_plan_storageTag=plan-24510551 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_repository_24707116_branch_name=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_ManualBuildTriggerReason_userName=Soares bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 bamboo_planKey=JB-JGP14 bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 HOME=/home/bamboo bamboo_planRepository_1_branchName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 07-Jul-2020 01:59:28 | |
| 07-Jul-2020 01:59:28 | > Configure project : |
| 07-Jul-2020 01:59:28 | HEADLESS BUILD |
| 07-Jul-2020 01:59:28 | Using a BUILD profile. |
| 07-Jul-2020 01:59:28 | |
| 07-Jul-2020 01:59:28 | > Task :clean |
| 07-Jul-2020 01:59:28 | > Task :cleanPackageDir |
| 07-Jul-2020 01:59:29 | > Task :copyHelp |
| 07-Jul-2020 01:59:30 | > Task :buildIndices |
| 07-Jul-2020 01:59:32 | |
| 07-Jul-2020 01:59:32 | > Task :compileJava |
| 07-Jul-2020 01:59:32 | Setting target compatibility to 11 |
| 07-Jul-2020 01:59:37 | Note: Some input files use or override a deprecated API. |
| 07-Jul-2020 01:59:37 | Note: Recompile with -Xlint:deprecation for details. |
| 07-Jul-2020 01:59:37 | Note: Some input files use unchecked or unsafe operations. |
| 07-Jul-2020 01:59:37 | Note: Recompile with -Xlint:unchecked for details. |
| 07-Jul-2020 01:59:37 | |
| 07-Jul-2020 01:59:37 | > Task :processResources |
| 07-Jul-2020 01:59:37 | > Task :classes |
| 07-Jul-2020 01:59:37 | > Task :setGitVals UP-TO-DATE |
| 07-Jul-2020 01:59:37 | > Task :createBuildProperties |
| 07-Jul-2020 01:59:39 | > Task :compileLinkCheck |
| 07-Jul-2020 01:59:39 | > Task :cleanBuildingHTML UP-TO-DATE |
| 07-Jul-2020 01:59:39 | > Task :convertBuildingMD |
| 07-Jul-2020 01:59:39 | > Task :syncDocs |
| 07-Jul-2020 01:59:39 | > Task :syncResources |
| 07-Jul-2020 01:59:39 | > Task :prepare |
| 07-Jul-2020 01:59:40 | |
| 07-Jul-2020 01:59:40 | > Task :linkCheck |
| 07-Jul-2020 01:59:40 | Checking help file links |
| 07-Jul-2020 01:59:40 | |
| 07-Jul-2020 01:59:40 | Results: |
| 07-Jul-2020 01:59:40 | 138 distinct help targets |
| 07-Jul-2020 01:59:40 | 138 help mappings |
| 07-Jul-2020 01:59:40 | 0 invalid targets |
| 07-Jul-2020 01:59:40 | 24 unused targets |
| 07-Jul-2020 01:59:40 | uniprotfetcher: html/features/uniprotsequencefetcher.html |
| 07-Jul-2020 01:59:40 | overviewprefs: html/features/preferences.html#overview |
| 07-Jul-2020 01:59:40 | cdnafeatures: html/features/codingfeatures.html |
| 07-Jul-2020 01:59:40 | ensemblfetch: html/features/ensemblsequencefetcher.html |
| 07-Jul-2020 01:59:40 | io.modellerpir: html/io/modellerpir.html |
| 07-Jul-2020 01:59:40 | pdbmcviewer: html/features/pdbviewer.html |
| 07-Jul-2020 01:59:40 | groovy.colours: html/features/groovy.html#groovyColours |
| 07-Jul-2020 01:59:40 | seqmappings: html/features/seqmappings.html |
| 07-Jul-2020 01:59:40 | uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts |
| 07-Jul-2020 01:59:40 | splitframe.mirrorfonts: html/features/splitView.html#mirror |
| 07-Jul-2020 01:59:40 | subtMatrices.pam250: html/calculations/scorematrices.html#pam250 |
| 07-Jul-2020 01:59:40 | search: html/features/search.html |
| 07-Jul-2020 01:59:40 | viewingpdbs.reps: html/features/viewingpdbs.html#viewreps |
| 07-Jul-2020 01:59:40 | alformats: html/io/fileformats.html |
| 07-Jul-2020 01:59:40 | strucprefs: html/features/preferences.html#structure |
| 07-Jul-2020 01:59:40 | siftsmapping: html/features/siftsmapping.html |
| 07-Jul-2020 01:59:40 | chimera.annotxfer: html/features/chimera.html#annotxfer |
| 07-Jul-2020 01:59:40 | pdbfts: html/features/pdbsequencefetcher.html#pdbfts |
| 07-Jul-2020 01:59:40 | newkeys: html/features/newkeystrokes.html |
| 07-Jul-2020 01:59:40 | seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature |
| 07-Jul-2020 01:59:40 | jalarchive: html/features/jalarchive.html |
| 07-Jul-2020 01:59:40 | newsreader: html/webServices/newsreader.html |
| 07-Jul-2020 01:59:40 | popMenuAddref: html/menus/popupMenu.html#addrefannot |
| 07-Jul-2020 01:59:40 | overview: html/features/overview.html |
| 07-Jul-2020 01:59:40 | 0 invalid map urls |
| 07-Jul-2020 01:59:40 | 0 invalid image attributes |
| 07-Jul-2020 01:59:40 | 386 internal href links (74 with anchors) |
| 07-Jul-2020 01:59:40 | 0 invalid internal href links |
| 07-Jul-2020 01:59:40 | 0 invalid internal anchor links |
| 07-Jul-2020 01:59:40 | 87 external href links |
| 07-Jul-2020 01:59:40 | External links not verified as internet not available |
| 07-Jul-2020 01:59:40 | *** Success *** |
| 07-Jul-2020 01:59:41 | |
| 07-Jul-2020 01:59:41 | > Task :jar |
| 07-Jul-2020 01:59:41 | > Task :syncJars |
| 07-Jul-2020 01:59:41 | > Task :makeDist |
| 07-Jul-2020 01:59:49 | > Task :shadowJar |
| 07-Jul-2020 01:59:49 | > Task :getdownWebsite |
| 07-Jul-2020 01:59:50 | |
| 07-Jul-2020 01:59:50 | > Task :getdownDigest |
| 07-Jul-2020 01:59:50 | Generating digest file './getdown/website/11/digest.txt'... |
| 07-Jul-2020 01:59:50 | Generating digest file './getdown/website/11/digest2.txt'... |
| 07-Jul-2020 01:59:50 | |
| 07-Jul-2020 01:59:50 | > Task :getdown |
| 07-Jul-2020 01:59:50 | 2020/07/07 01:59:49:693 WARNING Starting without install4j classes |
| 07-Jul-2020 01:59:50 | 2020/07/07 01:59:50:195 WARNING Starting without install4j classes |
| 07-Jul-2020 01:59:51 | > Task :copyInstall4jTemplate |
| 07-Jul-2020 01:59:53 | |
| 07-Jul-2020 01:59:53 | > Task :installers |
| 07-Jul-2020 01:59:53 | Using projectFile /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/utils/install4j/jalview-install4j-conf.install4j |
| 07-Jul-2020 01:59:54 | install4j version 8.0.5 (build 8155), built on 2020-03-16 |
| 07-Jul-2020 01:59:54 | Using Java 1.8.0_252 from /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b09-2.el7_8.x86_64/jre |
| 07-Jul-2020 01:59:54 | Registered to Jalview, University of Dundee |
| 07-Jul-2020 01:59:54 | |
| 07-Jul-2020 01:59:54 | Loading config file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/utils/install4j/jalview-install4j-conf.install4j |
| 07-Jul-2020 01:59:56 | Creating media file 'Windows x64 EXE Installer': |
| 07-Jul-2020 01:59:56 | Collecting files: |
| 07-Jul-2020 01:59:56 | [WARNING] The version of the bundled JRE is too low. It should be at least 11! |
| 07-Jul-2020 01:59:56 | Compiling launchers: |
| 07-Jul-2020 01:59:56 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 01:59:56 | Generating VM options file jalview.vmoptions. |
| 07-Jul-2020 01:59:56 | Creating media file: |
| 07-Jul-2020 01:59:56 | Using custom installer icon: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/utils/install4j/../../resources/images/jalview_logos.ico |
| 07-Jul-2020 01:59:58 | Zipping custom code & resources JAR file |
| 07-Jul-2020 01:59:58 | Identifying components |
| 07-Jul-2020 01:59:58 | Adding JRE (jre-11-windows-x64.tar.gz) |
| 07-Jul-2020 01:59:58 | Shrinking runtime |
| 07-Jul-2020 01:59:58 | |
| 07-Jul-2020 01:59:58 | Creating media file 'macOS Disk Image': |
| 07-Jul-2020 01:59:58 | Collecting files: |
| 07-Jul-2020 01:59:58 | Compiling launchers: |
| 07-Jul-2020 01:59:58 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 01:59:58 | Generating VM options file vmoptions.txt. |
| 07-Jul-2020 01:59:58 | Creating media file: |
| 07-Jul-2020 01:59:58 | Identifying components |
| 07-Jul-2020 01:59:59 | Shrinking runtime |
| 07-Jul-2020 01:59:59 | |
| 07-Jul-2020 01:59:59 | Creating media file 'Linux x64 Shell Installer': |
| 07-Jul-2020 01:59:59 | Collecting files: |
| 07-Jul-2020 01:59:59 | [WARNING] The version of the bundled JRE is too low. It should be at least 11! |
| 07-Jul-2020 01:59:59 | Compiling launchers: |
| 07-Jul-2020 01:59:59 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 01:59:59 | Generating launcher script file |
| 07-Jul-2020 01:59:59 | Generating VM options file .i4j_external_735/jalview.vmoptions. |
| 07-Jul-2020 01:59:59 | Creating media file: |
| 07-Jul-2020 01:59:59 | Generating launcher script file |
| 07-Jul-2020 02:00:00 | Zipping custom code & resources JAR file |
| 07-Jul-2020 02:00:00 | Identifying components |
| 07-Jul-2020 02:00:00 | Adding JRE (jre-11-linux-x64.tar.gz) |
| 07-Jul-2020 02:00:00 | Shrinking runtime |
| 07-Jul-2020 02:00:00 | |
| 07-Jul-2020 02:00:00 | Creating media file 'Unix .tar.gz Archive': |
| 07-Jul-2020 02:00:00 | Collecting files: |
| 07-Jul-2020 02:00:00 | Compiling launchers: |
| 07-Jul-2020 02:00:00 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:00 | Generating launcher script file |
| 07-Jul-2020 02:00:00 | Generating VM options file .i4j_external_735/jalview.vmoptions. |
| 07-Jul-2020 02:00:00 | Creating media file: |
| 07-Jul-2020 02:00:00 | Identifying components |
| 07-Jul-2020 02:00:01 | Shrinking runtime |
| 07-Jul-2020 02:00:01 | |
| 07-Jul-2020 02:00:01 | Creating media file 'Unix Shell Installer': |
| 07-Jul-2020 02:00:01 | Collecting files: |
| 07-Jul-2020 02:00:01 | Compiling launchers: |
| 07-Jul-2020 02:00:01 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:01 | Generating launcher script file |
| 07-Jul-2020 02:00:01 | Generating VM options file .i4j_external_735/jalview.vmoptions. |
| 07-Jul-2020 02:00:01 | Creating media file: |
| 07-Jul-2020 02:00:01 | Generating launcher script file |
| 07-Jul-2020 02:00:02 | Zipping custom code & resources JAR file |
| 07-Jul-2020 02:00:02 | Identifying components |
| 07-Jul-2020 02:00:02 | Shrinking runtime |
| 07-Jul-2020 02:00:02 | |
| 07-Jul-2020 02:00:02 | Compressing 5 media files with 4 threads: |
| 07-Jul-2020 02:00:18 | |
| 07-Jul-2020 02:00:18 | Compressed media file 'macOS Disk Image': |
| 07-Jul-2020 02:00:18 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/11 |
| 07-Jul-2020 02:00:18 | The name of the media file is Jalview_Build-2_11_1_0-macos-java_11.dmg. |
| 07-Jul-2020 02:00:18 | The size of the media file is 82.0 MB |
| 07-Jul-2020 02:00:21 | |
| 07-Jul-2020 02:00:21 | Compressed media file 'Unix .tar.gz Archive': |
| 07-Jul-2020 02:00:21 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/11 |
| 07-Jul-2020 02:00:21 | The name of the media file is jalview_build-2_11_1_0-unix-java_11.tar.gz. |
| 07-Jul-2020 02:00:21 | The size of the media file is 44.7 MB |
| 07-Jul-2020 02:00:27 | |
| 07-Jul-2020 02:00:27 | Compressed media file 'Unix Shell Installer': |
| 07-Jul-2020 02:00:27 | Compressing files |
| 07-Jul-2020 02:00:27 | Applying LZMA compression |
| 07-Jul-2020 02:00:27 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/11 |
| 07-Jul-2020 02:00:27 | The name of the media file is jalview_build-2_11_1_0-unix-java_11.sh. |
| 07-Jul-2020 02:00:27 | The size of the media file is 40.1 MB |
| 07-Jul-2020 02:00:29 | |
| 07-Jul-2020 02:00:29 | Compressed media file 'Windows x64 EXE Installer': |
| 07-Jul-2020 02:00:29 | Compressing files |
| 07-Jul-2020 02:00:29 | Applying LZMA compression |
| 07-Jul-2020 02:00:29 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/11 |
| 07-Jul-2020 02:00:29 | The name of the media file is Jalview_Build-2_11_1_0-windows-x64-java_11.exe. |
| 07-Jul-2020 02:00:29 | The size of the media file is 81.0 MB |
| 07-Jul-2020 02:00:29 | |
| 07-Jul-2020 02:00:29 | Compressed media file 'Linux x64 Shell Installer': |
| 07-Jul-2020 02:00:29 | Compressing files |
| 07-Jul-2020 02:00:29 | Applying LZMA compression |
| 07-Jul-2020 02:00:29 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/11 |
| 07-Jul-2020 02:00:29 | The name of the media file is jalview_build-2_11_1_0-linux_x64-java_11.sh. |
| 07-Jul-2020 02:00:29 | The size of the media file is 79.8 MB |
| 07-Jul-2020 02:00:29 | Writing md5sums. |
| 07-Jul-2020 02:00:29 | Writing sha256sums. |
| 07-Jul-2020 02:00:29 | Writing updates.xml. |
| 07-Jul-2020 02:00:29 | Please upload updates.xml to https://www.jalview.org/install4j/updates.xml |
| 07-Jul-2020 02:00:29 | and upload all generated media files to the same directory. |
| 07-Jul-2020 02:00:29 | |
| 07-Jul-2020 02:00:29 | Build completed in 34.8 seconds. |
| 07-Jul-2020 02:00:30 | |
| 07-Jul-2020 02:00:30 | BUILD SUCCESSFUL in 1m 5s |
| 07-Jul-2020 02:00:30 | 21 actionable tasks: 20 executed, 1 up-to-date |
| 07-Jul-2020 02:00:31 | Finished task 'Jalview distribution for Java 11' with result: Success |
| 07-Jul-2020 02:00:31 | Substituting variable: ${bamboo.planKey} with JB-JGP14 |
| 07-Jul-2020 02:00:31 | Starting task 'Jalview distribution for Java 8' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 07-Jul-2020 02:00:31 | Bamboo Artifactory Plugin version: 2.6.2 |
| 07-Jul-2020 02:00:31 | Beginning to execute external process for build 'Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows - Default Job #4 (JB-JGP14-JOB1-4)' ... running command line: /home/bamboo/buildtools/gradle/bin/gradle -x test -x clean -PJAVA_VERSION=1.8 -PCHANNEL=BUILD -Pbamboo_planKey=JB-JGP14 shadowJar getdown installers ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_repository_revision_number=3db640482c218a4cc8919189fef1842424a0b9fd bamboo_resultsUrl=https://builds.jalview.org/browse/JB-JGP14-JOB1-4 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_24707116_name=Jalview Git bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-JGP14-JOB1 bamboo_capability_system_jdk_JDK_1_8_0_171=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_shortPlanName=bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_repository_24707116_revision_number=3db640482c218a4cc8919189fef1842424a0b9fd bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=4 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_capability_system_jdk_OpenJDK_11_JRE_only=/home/bamboo/buildtools/jvm/jre11_x64_linux bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-JGP14-JOB1-4 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_shortPlanKey=JGP14 bamboo_repository_24707116_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/OpenJDK11/jdk-11 bamboo_planRepository_revision=3db640482c218a4cc8919189fef1842424a0b9fd bamboo_buildTimeStamp=2020-07-07T01:59:22.449+01:00 bamboo_repository_previous_revision_number=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_repository_24707116_git_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_planRepository_previousRevision=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_repository_git_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_buildResultKey=JB-JGP14-JOB1-4 bamboo_repository_branch_name=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_buildPlanName=Jalview Builds - Gradle build with getdown and install4j - bug-JAL-3628_Unable_to_save_update_to_existing_file_in_Windows - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=3db640482c218a4cc8919189fef1842424a0b9fd SHLVL=1 bamboo_repository_24707116_previous_revision_number=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_repository_24707116_git_username= bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PJAVA_VERSION=11 -PCHANNEL=BUILD -Pbamboo_planKey=JB-JGP14 clean makeDist shadowJar getdown installers JAVA_HOME=/home/bamboo/buildtools/OpenJDK11/jdk-11/ bamboo_dependenciesDisabled=false LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_planRepository_branch=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=06d91fe495898df93fd6fcdc305f304cf9f3aa16 bamboo_planRepository_branchDisplayName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_plan_storageTag=plan-24510551 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_repository_24707116_branch_name=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_ManualBuildTriggerReason_userName=Soares bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1 bamboo_planKey=JB-JGP14 bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 HOME=/home/bamboo bamboo_planRepository_1_branchName=bug/JAL-3628_Unable_to_save_update_to_existing_file_in_Windows PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 07-Jul-2020 02:00:32 | |
| 07-Jul-2020 02:00:32 | > Configure project : |
| 07-Jul-2020 02:00:32 | HEADLESS BUILD |
| 07-Jul-2020 02:00:32 | Using a BUILD profile. |
| 07-Jul-2020 02:00:34 | |
| 07-Jul-2020 02:00:34 | > Task :compileJava |
| 07-Jul-2020 02:00:34 | Setting target compatibility to 1.8 |
| 07-Jul-2020 02:00:38 | Note: Some input files use or override a deprecated API. |
| 07-Jul-2020 02:00:38 | Note: Recompile with -Xlint:deprecation for details. |
| 07-Jul-2020 02:00:38 | Note: Some input files use unchecked or unsafe operations. |
| 07-Jul-2020 02:00:38 | Note: Recompile with -Xlint:unchecked for details. |
| 07-Jul-2020 02:00:38 | |
| 07-Jul-2020 02:00:38 | > Task :processResources UP-TO-DATE |
| 07-Jul-2020 02:00:38 | > Task :classes |
| 07-Jul-2020 02:00:38 | > Task :cleanPackageDir |
| 07-Jul-2020 02:00:38 | > Task :copyHelp UP-TO-DATE |
| 07-Jul-2020 02:00:40 | > Task :buildIndices |
| 07-Jul-2020 02:00:40 | > Task :setGitVals UP-TO-DATE |
| 07-Jul-2020 02:00:40 | > Task :createBuildProperties |
| 07-Jul-2020 02:00:41 | > Task :compileLinkCheck |
| 07-Jul-2020 02:00:41 | > Task :cleanBuildingHTML |
| 07-Jul-2020 02:00:41 | > Task :convertBuildingMD |
| 07-Jul-2020 02:00:41 | > Task :syncDocs UP-TO-DATE |
| 07-Jul-2020 02:00:41 | > Task :syncResources UP-TO-DATE |
| 07-Jul-2020 02:00:41 | > Task :prepare UP-TO-DATE |
| 07-Jul-2020 02:00:42 | |
| 07-Jul-2020 02:00:42 | > Task :linkCheck |
| 07-Jul-2020 02:00:42 | Checking help file links |
| 07-Jul-2020 02:00:42 | |
| 07-Jul-2020 02:00:42 | Results: |
| 07-Jul-2020 02:00:42 | 138 distinct help targets |
| 07-Jul-2020 02:00:42 | 138 help mappings |
| 07-Jul-2020 02:00:42 | 0 invalid targets |
| 07-Jul-2020 02:00:42 | 24 unused targets |
| 07-Jul-2020 02:00:42 | uniprotfetcher: html/features/uniprotsequencefetcher.html |
| 07-Jul-2020 02:00:42 | overviewprefs: html/features/preferences.html#overview |
| 07-Jul-2020 02:00:42 | cdnafeatures: html/features/codingfeatures.html |
| 07-Jul-2020 02:00:42 | ensemblfetch: html/features/ensemblsequencefetcher.html |
| 07-Jul-2020 02:00:42 | io.modellerpir: html/io/modellerpir.html |
| 07-Jul-2020 02:00:42 | pdbmcviewer: html/features/pdbviewer.html |
| 07-Jul-2020 02:00:42 | groovy.colours: html/features/groovy.html#groovyColours |
| 07-Jul-2020 02:00:42 | seqmappings: html/features/seqmappings.html |
| 07-Jul-2020 02:00:42 | uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts |
| 07-Jul-2020 02:00:42 | splitframe.mirrorfonts: html/features/splitView.html#mirror |
| 07-Jul-2020 02:00:42 | subtMatrices.pam250: html/calculations/scorematrices.html#pam250 |
| 07-Jul-2020 02:00:42 | search: html/features/search.html |
| 07-Jul-2020 02:00:42 | viewingpdbs.reps: html/features/viewingpdbs.html#viewreps |
| 07-Jul-2020 02:00:42 | alformats: html/io/fileformats.html |
| 07-Jul-2020 02:00:42 | strucprefs: html/features/preferences.html#structure |
| 07-Jul-2020 02:00:42 | siftsmapping: html/features/siftsmapping.html |
| 07-Jul-2020 02:00:42 | chimera.annotxfer: html/features/chimera.html#annotxfer |
| 07-Jul-2020 02:00:42 | pdbfts: html/features/pdbsequencefetcher.html#pdbfts |
| 07-Jul-2020 02:00:42 | newkeys: html/features/newkeystrokes.html |
| 07-Jul-2020 02:00:42 | seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature |
| 07-Jul-2020 02:00:42 | jalarchive: html/features/jalarchive.html |
| 07-Jul-2020 02:00:42 | newsreader: html/webServices/newsreader.html |
| 07-Jul-2020 02:00:42 | popMenuAddref: html/menus/popupMenu.html#addrefannot |
| 07-Jul-2020 02:00:42 | overview: html/features/overview.html |
| 07-Jul-2020 02:00:42 | 0 invalid map urls |
| 07-Jul-2020 02:00:42 | 0 invalid image attributes |
| 07-Jul-2020 02:00:42 | 386 internal href links (74 with anchors) |
| 07-Jul-2020 02:00:42 | 0 invalid internal href links |
| 07-Jul-2020 02:00:42 | 0 invalid internal anchor links |
| 07-Jul-2020 02:00:42 | 87 external href links |
| 07-Jul-2020 02:00:42 | External links not verified as internet not available |
| 07-Jul-2020 02:00:42 | *** Success *** |
| 07-Jul-2020 02:00:43 | |
| 07-Jul-2020 02:00:43 | > Task :jar |
| 07-Jul-2020 02:00:43 | > Task :syncJars |
| 07-Jul-2020 02:00:43 | > Task :makeDist |
| 07-Jul-2020 02:00:48 | > Task :shadowJar |
| 07-Jul-2020 02:00:48 | > Task :getdownWebsite |
| 07-Jul-2020 02:00:49 | 2020/07/07 02:00:48:977 WARNING Starting without install4j classes |
| 07-Jul-2020 02:00:49 | 2020/07/07 02:00:49:445 WARNING Starting without install4j classes |
| 07-Jul-2020 02:00:49 | |
| 07-Jul-2020 02:00:49 | > Task :getdownDigest |
| 07-Jul-2020 02:00:49 | Generating digest file './getdown/website/1.8/digest.txt'... |
| 07-Jul-2020 02:00:49 | Generating digest file './getdown/website/1.8/digest2.txt'... |
| 07-Jul-2020 02:00:49 | |
| 07-Jul-2020 02:00:49 | > Task :getdown |
| 07-Jul-2020 02:00:49 | > Task :copyInstall4jTemplate UP-TO-DATE |
| 07-Jul-2020 02:00:51 | |
| 07-Jul-2020 02:00:51 | > Task :installers |
| 07-Jul-2020 02:00:51 | Using projectFile /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/utils/install4j/jalview-install4j-conf.install4j |
| 07-Jul-2020 02:00:51 | install4j version 8.0.5 (build 8155), built on 2020-03-16 |
| 07-Jul-2020 02:00:51 | Using Java 1.8.0_252 from /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b09-2.el7_8.x86_64/jre |
| 07-Jul-2020 02:00:51 | Registered to Jalview, University of Dundee |
| 07-Jul-2020 02:00:51 | |
| 07-Jul-2020 02:00:51 | Loading config file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/utils/install4j/jalview-install4j-conf.install4j |
| 07-Jul-2020 02:00:51 | Creating media file 'Windows x64 EXE Installer': |
| 07-Jul-2020 02:00:51 | Collecting files: |
| 07-Jul-2020 02:00:51 | [WARNING] The version of the bundled JRE is too low. It should be at least 1.8! |
| 07-Jul-2020 02:00:51 | Compiling launchers: |
| 07-Jul-2020 02:00:51 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:51 | Generating VM options file jalview.vmoptions. |
| 07-Jul-2020 02:00:51 | Creating media file: |
| 07-Jul-2020 02:00:51 | Using custom installer icon: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/utils/install4j/../../resources/images/jalview_logos.ico |
| 07-Jul-2020 02:00:52 | Zipping custom code & resources JAR file |
| 07-Jul-2020 02:00:52 | Identifying components |
| 07-Jul-2020 02:00:52 | Adding JRE (jre-8-windows-x64.tar.gz) |
| 07-Jul-2020 02:00:52 | Shrinking runtime |
| 07-Jul-2020 02:00:53 | |
| 07-Jul-2020 02:00:53 | Creating media file 'macOS Disk Image': |
| 07-Jul-2020 02:00:53 | Collecting files: |
| 07-Jul-2020 02:00:53 | Compiling launchers: |
| 07-Jul-2020 02:00:53 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:53 | Generating VM options file vmoptions.txt. |
| 07-Jul-2020 02:00:53 | Creating media file: |
| 07-Jul-2020 02:00:53 | Identifying components |
| 07-Jul-2020 02:00:54 | Shrinking runtime |
| 07-Jul-2020 02:00:54 | |
| 07-Jul-2020 02:00:54 | Creating media file 'Linux x64 Shell Installer': |
| 07-Jul-2020 02:00:54 | Collecting files: |
| 07-Jul-2020 02:00:54 | [WARNING] The version of the bundled JRE is too low. It should be at least 1.8! |
| 07-Jul-2020 02:00:54 | Compiling launchers: |
| 07-Jul-2020 02:00:54 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:54 | Generating launcher script file |
| 07-Jul-2020 02:00:54 | Generating VM options file .i4j_external_735/jalview.vmoptions. |
| 07-Jul-2020 02:00:54 | Creating media file: |
| 07-Jul-2020 02:00:54 | Generating launcher script file |
| 07-Jul-2020 02:00:55 | Zipping custom code & resources JAR file |
| 07-Jul-2020 02:00:55 | Identifying components |
| 07-Jul-2020 02:00:55 | Adding JRE (jre-8-linux-x64.tar.gz) |
| 07-Jul-2020 02:00:55 | Shrinking runtime |
| 07-Jul-2020 02:00:55 | |
| 07-Jul-2020 02:00:55 | Creating media file 'Unix .tar.gz Archive': |
| 07-Jul-2020 02:00:55 | Collecting files: |
| 07-Jul-2020 02:00:55 | Compiling launchers: |
| 07-Jul-2020 02:00:55 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:55 | Generating launcher script file |
| 07-Jul-2020 02:00:55 | Generating VM options file .i4j_external_735/jalview.vmoptions. |
| 07-Jul-2020 02:00:55 | Creating media file: |
| 07-Jul-2020 02:00:55 | Identifying components |
| 07-Jul-2020 02:00:56 | Shrinking runtime |
| 07-Jul-2020 02:00:56 | |
| 07-Jul-2020 02:00:56 | Creating media file 'Unix Shell Installer': |
| 07-Jul-2020 02:00:56 | Collecting files: |
| 07-Jul-2020 02:00:56 | Compiling launchers: |
| 07-Jul-2020 02:00:56 | Compiling launcher 'Jalview Launcher': |
| 07-Jul-2020 02:00:56 | Generating launcher script file |
| 07-Jul-2020 02:00:56 | Generating VM options file .i4j_external_735/jalview.vmoptions. |
| 07-Jul-2020 02:00:56 | Creating media file: |
| 07-Jul-2020 02:00:56 | Generating launcher script file |
| 07-Jul-2020 02:00:56 | Zipping custom code & resources JAR file |
| 07-Jul-2020 02:00:56 | Identifying components |
| 07-Jul-2020 02:00:56 | Shrinking runtime |
| 07-Jul-2020 02:00:57 | |
| 07-Jul-2020 02:00:57 | Compressing 5 media files with 4 threads: |
| 07-Jul-2020 02:01:14 | |
| 07-Jul-2020 02:01:14 | Compressed media file 'macOS Disk Image': |
| 07-Jul-2020 02:01:14 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/1.8 |
| 07-Jul-2020 02:01:14 | The name of the media file is Jalview_Build-2_11_1_0-macos-java_8.dmg. |
| 07-Jul-2020 02:01:14 | The size of the media file is 75.7 MB |
| 07-Jul-2020 02:01:17 | |
| 07-Jul-2020 02:01:17 | Compressed media file 'Unix .tar.gz Archive': |
| 07-Jul-2020 02:01:17 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/1.8 |
| 07-Jul-2020 02:01:17 | The name of the media file is jalview_build-2_11_1_0-unix-java_8.tar.gz. |
| 07-Jul-2020 02:01:17 | The size of the media file is 38.4 MB |
| 07-Jul-2020 02:01:18 | |
| 07-Jul-2020 02:01:18 | Compressed media file 'Unix Shell Installer': |
| 07-Jul-2020 02:01:18 | Compressing files |
| 07-Jul-2020 02:01:18 | Applying LZMA compression |
| 07-Jul-2020 02:01:18 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/1.8 |
| 07-Jul-2020 02:01:18 | The name of the media file is jalview_build-2_11_1_0-unix-java_8.sh. |
| 07-Jul-2020 02:01:18 | The size of the media file is 34.1 MB |
| 07-Jul-2020 02:01:20 | |
| 07-Jul-2020 02:01:20 | Compressed media file 'Windows x64 EXE Installer': |
| 07-Jul-2020 02:01:20 | Compressing files |
| 07-Jul-2020 02:01:20 | Applying LZMA compression |
| 07-Jul-2020 02:01:20 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/1.8 |
| 07-Jul-2020 02:01:20 | The name of the media file is Jalview_Build-2_11_1_0-windows-x64-java_8.exe. |
| 07-Jul-2020 02:01:20 | The size of the media file is 71.6 MB |
| 07-Jul-2020 02:01:20 | |
| 07-Jul-2020 02:01:20 | Compressed media file 'Linux x64 Shell Installer': |
| 07-Jul-2020 02:01:20 | Compressing files |
| 07-Jul-2020 02:01:20 | Applying LZMA compression |
| 07-Jul-2020 02:01:20 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JGP14-JOB1/build/install4j/1.8 |
| 07-Jul-2020 02:01:20 | The name of the media file is jalview_build-2_11_1_0-linux_x64-java_8.sh. |
| 07-Jul-2020 02:01:20 | The size of the media file is 73.1 MB |
| 07-Jul-2020 02:01:20 | Writing md5sums. |
| 07-Jul-2020 02:01:20 | Writing sha256sums. |
| 07-Jul-2020 02:01:20 | Writing updates.xml. |
| 07-Jul-2020 02:01:20 | Please upload updates.xml to https://www.jalview.org/install4j/updates.xml |
| 07-Jul-2020 02:01:20 | and upload all generated media files to the same directory. |
| 07-Jul-2020 02:01:20 | |
| 07-Jul-2020 02:01:20 | Build completed in 30.2 seconds. |
| 07-Jul-2020 02:01:21 | |
| 07-Jul-2020 02:01:21 | BUILD SUCCESSFUL in 50s |
| 07-Jul-2020 02:01:21 | 20 actionable tasks: 15 executed, 5 up-to-date |
| 07-Jul-2020 02:01:22 | Finished task 'Jalview distribution for Java 8' with result: Success |
| 07-Jul-2020 02:01:22 | Running post build plugin 'NCover Results Collector' |
| 07-Jul-2020 02:01:22 | Running post build plugin 'Artifact Copier' |
| 07-Jul-2020 02:01:22 | Publishing an artifact: Jalview getdown launcher |
| 07-Jul-2020 02:01:22 | Finished publishing of artifact Shared artifact: [Jalview getdown launcher], pattern: [**/*] anchored at: [getdown/files] in 22.94 ms |
| 07-Jul-2020 02:01:22 | Publishing an artifact: getdown-channel |
| 07-Jul-2020 02:01:22 | Finished publishing of artifact Shared artifact: [getdown-channel], pattern: [**/*] anchored at: [getdown/website] in 287.4 ms |
| 07-Jul-2020 02:01:22 | Publishing an artifact: install4j installers |
| 07-Jul-2020 02:01:24 | Finished publishing of artifact Shared artifact: [install4j installers], pattern: [**/*] anchored at: [build/install4j] in 1.842 s |
| 07-Jul-2020 02:01:24 | Publishing an artifact: Jalview executables |
| 07-Jul-2020 02:01:24 | Finished publishing of artifact Shared artifact: [Jalview executables], pattern: [**/*] anchored at: [build/libs] in 242.0 ms |
| 07-Jul-2020 02:01:24 | Running post build plugin 'Artifactory Release Management Staging' |
| 07-Jul-2020 02:01:24 | Running post build plugin 'Artifactory Build Info Copier' |
| 07-Jul-2020 02:01:24 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 07-Jul-2020 02:01:24 | Running post build plugin 'npm Cache Cleanup' |
| 07-Jul-2020 02:01:24 | Running post build plugin 'Clover Results Collector' |
| 07-Jul-2020 02:01:24 | Running post build plugin 'Docker Container Cleanup' |
| 07-Jul-2020 02:01:24 | Finalising the build... |
| 07-Jul-2020 02:01:24 | Stopping timer. |
| 07-Jul-2020 02:01:24 | Build JB-JGP14-JOB1-4 completed. |
| 07-Jul-2020 02:01:24 | Running on server: post build plugin 'NCover Results Collector' |
| 07-Jul-2020 02:01:24 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 07-Jul-2020 02:01:24 | Running on server: post build plugin 'Clover Delta Calculator' |
| 07-Jul-2020 02:01:24 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 07-Jul-2020 02:01:24 | All post build plugins have finished |
| 07-Jul-2020 02:01:24 | Generating build results summary... |
| 07-Jul-2020 02:01:24 | Saving build results to disk... |
| 07-Jul-2020 02:01:24 | Logging substituted variables... |
| 07-Jul-2020 02:01:24 | Indexing build results... |
| 07-Jul-2020 02:01:24 | Finished building JB-JGP14-JOB1-4. |