build jalview with OpenJDK 11 and additionally build a set of java 11 JREs
Build: #78 failed
Job: Default Job failed
Build log
The build generated 93 lines of output. Download or view full build log
| 23-Mar-2019 09:34:40 | Build Jalview Builds - jalview develop java11 build - Default Job #78 (JB-JDJB-JOB1-78) started building on agent Default Agent |
| 23-Mar-2019 09:34:40 | |
| 23-Mar-2019 09:34:40 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 |
| 23-Mar-2019 09:34:40 | Executing build Jalview Builds - jalview develop java11 build - Default Job #78 (JB-JDJB-JOB1-78) |
| 23-Mar-2019 09:34:40 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 23-Mar-2019 09:34:40 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 |
| 23-Mar-2019 09:34:40 | Updating source code to revision: 2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 |
| 23-Mar-2019 09:34:40 | Fetching 'refs/heads/develop' from 'http://source.jalview.org/git/jalview.git'. |
| 23-Mar-2019 09:34:40 | Checking out revision 2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1. |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 23-Mar-2019 09:34:40 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 23-Mar-2019 09:34:41 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164 |
| 23-Mar-2019 09:34:41 | dc2734d..2aaeed3 develop -> origin/develop |
| 23-Mar-2019 09:34:41 | c643294..4208987 Jalview-JS/develop -> origin/Jalview-JS/develop |
| 23-Mar-2019 09:34:41 | * [new branch] bug/JAL-1889serverTestSuite -> origin/bug/JAL-1889serverTestSuite |
| 23-Mar-2019 09:34:41 | * [new branch] merge/JAL-3187_JAL-3010 -> origin/merge/JAL-3187_JAL-3010 |
| 23-Mar-2019 09:34:41 | 3027bfb..8a8af91 task/JAL-3130_Java_11_investigations-Ben-3 -> origin/task/JAL-3130_Java_11_investigations-Ben-3 |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 23-Mar-2019 09:34:41 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 23-Mar-2019 09:34:41 | Already on 'develop' |
| 23-Mar-2019 09:34:41 | Your branch is behind 'origin/develop' by 9 commits, and can be fast-forwarded. |
| 23-Mar-2019 09:34:41 | (use "git pull" to update your local branch) |
| 23-Mar-2019 09:34:41 | HEAD is now at 2aaeed3 JAL-1889 explicit recalc of geometry for scale left/right/above on/off |
| 23-Mar-2019 09:34:41 | Updated source code to revision: 2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 |
| 23-Mar-2019 09:34:41 | Finished task 'Checkout Default Repository' with result: Success |
| 23-Mar-2019 09:34:41 | Running pre-build action: VCS Version Collector |
| 23-Mar-2019 09:34:41 | Running pre-build action: Artifactory Release Staging |
| 23-Mar-2019 09:34:41 | Starting task 'j11 Ant build' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' |
| 23-Mar-2019 09:34:41 | Beginning to execute external process for build 'Jalview Builds - jalview develop java11 build - Default Job #78 (JB-JDJB-JOB1-78)' ... running command line: /home/bamboo/buildtools/j11/ant-j11/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JDJB-JOB1 -f build-j11.xml clean build ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=develop bamboo_repository_6258708_git_branch=develop bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr bamboo_planRepository_1_branchDisplayName=develop bamboo_repository_revision_number=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_repository_6258708_name=Jalview Git bamboo_resultsUrl=https://builds.jalview.org/browse/JB-JDJB-JOB1-78 bamboo_repository_6258708_revision_number=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-JDJB-JOB1 bamboo_capability_system_jdk_JDK_1_8_0_171=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_shortPlanName=jalview develop java11 build bamboo_planRepository_name=Jalview Git bamboo_buildNumber=78 bamboo_capability_system_jdk_OpenJDK_11_JRE_only=/home/bamboo/buildtools/jvm/jre11_x64_linux bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-JDJB-JOB1-78 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_agentId=196609 bamboo_planName=Jalview Builds - jalview develop java11 build bamboo_shortPlanKey=JDJB bamboo_repository_6258708_git_username= bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jvm/jdk11_x64_linux bamboo_planRepository_revision=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_buildTimeStamp=2019-03-23T08:58:49.953Z bamboo_repository_previous_revision_number=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_planRepository_previousRevision=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_repository_git_branch=develop bamboo_buildResultKey=JB-JDJB-JOB1-78 bamboo_repository_branch_name=develop bamboo_buildPlanName=Jalview Builds - jalview develop java11 build - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git JAVA_HOME=/home/bamboo/buildtools/jvm/jdk11_x64_linux bamboo_repository_6258708_previous_revision_number=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_buildFailed=false ANT_HOME=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_branch=develop bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_planRepository_branchDisplayName=develop bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=develop bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_plan_storageTag=plan-6062119 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 bamboo_planKey=JB-JDJB bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_repository_6258708_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_repository_6258708_branch_name=develop bamboo_planRepository_1_branchName=develop PATH=/home/bamboo/buildtools/jvm/jdk11_x64_linux/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 23-Mar-2019 09:34:41 | Buildfile: build-j11.xml does not exist! |
| 23-Mar-2019 09:34:41 | Build failed |
| 23-Mar-2019 09:34:41 | Failing task since return code of [/home/bamboo/buildtools/j11/ant-j11/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JDJB-JOB1 -f build-j11.xml clean build] was 1 while expected 0 |
| 23-Mar-2019 09:34:41 | Finished task 'j11 Ant build' with result: Failed |
| 23-Mar-2019 09:34:41 | Starting task 'build' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' |
| 23-Mar-2019 09:34:41 | Beginning to execute external process for build 'Jalview Builds - jalview develop java11 build - Default Job #78 (JB-JDJB-JOB1-78)' ... running command line: /home/bamboo/buildtools/j11/ant-j11/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JDJB-JOB1 -f build-j11.xml makedist ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=develop bamboo_repository_6258708_git_branch=develop bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr bamboo_planRepository_1_branchDisplayName=develop bamboo_repository_revision_number=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_repository_6258708_name=Jalview Git bamboo_resultsUrl=https://builds.jalview.org/browse/JB-JDJB-JOB1-78 bamboo_repository_6258708_revision_number=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-JDJB-JOB1 bamboo_capability_system_jdk_JDK_1_8_0_171=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_shortPlanName=jalview develop java11 build bamboo_planRepository_name=Jalview Git bamboo_buildNumber=78 bamboo_capability_system_jdk_OpenJDK_11_JRE_only=/home/bamboo/buildtools/jvm/jre11_x64_linux bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-JDJB-JOB1-78 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_agentId=196609 bamboo_planName=Jalview Builds - jalview develop java11 build bamboo_shortPlanKey=JDJB bamboo_repository_6258708_git_username= bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jvm/jdk11_x64_linux bamboo_planRepository_revision=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_buildTimeStamp=2019-03-23T08:58:49.953Z bamboo_repository_previous_revision_number=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_planRepository_previousRevision=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_repository_git_branch=develop bamboo_buildResultKey=JB-JDJB-JOB1-78 bamboo_repository_branch_name=develop bamboo_buildPlanName=Jalview Builds - jalview develop java11 build - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=2aaeed34a80cf782d2ea57a74bb5aa0880ee2aa1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git JAVA_HOME=/home/bamboo/buildtools/jvm/jdk11_x64_linux bamboo_repository_6258708_previous_revision_number=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_build_commandline_com_atlassian_bamboo_plugins_ant_task_builder_ant_5=/home/bamboo/buildtools/j11/ant-j11/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JDJB-JOB1 -f build-j11.xml clean build bamboo_buildFailed=true ANT_HOME=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_branch=develop bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=dc2734d988e10f3e76dda02d9913b611f6713552 bamboo_planRepository_branchDisplayName=develop bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=develop bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_plan_storageTag=plan-6062119 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1 bamboo_planKey=JB-JDJB bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64 bamboo_repository_6258708_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_repository_6258708_branch_name=develop bamboo_planRepository_1_branchName=develop PATH=/home/bamboo/buildtools/jvm/jdk11_x64_linux/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 23-Mar-2019 09:34:42 | Buildfile: build-j11.xml does not exist! |
| 23-Mar-2019 09:34:42 | Build failed |
| 23-Mar-2019 09:34:42 | Failing task since return code of [/home/bamboo/buildtools/j11/ant-j11/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JDJB-JOB1 -f build-j11.xml makedist] was 1 while expected 0 |
| 23-Mar-2019 09:34:42 | Finished task 'build' with result: Failed |
| 23-Mar-2019 09:34:42 | Running post build plugin 'NCover Results Collector' |
| 23-Mar-2019 09:34:42 | Running post build plugin 'Artifact Copier' |
| 23-Mar-2019 09:34:42 | Publishing an artifact: Clover Report (System) |
| 23-Mar-2019 09:34:42 | Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1/clover does not exist. |
| 23-Mar-2019 09:34:42 | The artifact hasn't been successfully published after 144.1 μs |
| 23-Mar-2019 09:34:42 | Publishing an artifact: jalview-jars |
| 23-Mar-2019 09:34:42 | Unable to publish artifact [jalview-jars]: |
| 23-Mar-2019 09:34:42 | The artifact hasn't been successfully published after 18.33 ms |
| 23-Mar-2019 09:34:42 | Running post build plugin 'Artifactory Release Management Staging' |
| 23-Mar-2019 09:34:42 | Running post build plugin 'Artifactory Build Info Copier' |
| 23-Mar-2019 09:34:42 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 23-Mar-2019 09:34:42 | Running post build plugin 'npm Cache Cleanup' |
| 23-Mar-2019 09:34:42 | Running post build plugin 'Clover Results Collector' |
| 23-Mar-2019 09:34:42 | Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:clover/jalviewX/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JDJB-JOB1] |
| 23-Mar-2019 09:34:42 | Running post build plugin 'Docker Container Cleanup' |
| 23-Mar-2019 09:34:42 | Finalising the build... |
| 23-Mar-2019 09:34:42 | Stopping timer. |
| 23-Mar-2019 09:34:42 | Build JB-JDJB-JOB1-78 completed. |
| 23-Mar-2019 09:34:42 | Running on server: post build plugin 'NCover Results Collector' |
| 23-Mar-2019 09:34:42 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 23-Mar-2019 09:34:42 | Running on server: post build plugin 'Clover Delta Calculator' |
| 23-Mar-2019 09:34:42 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 23-Mar-2019 09:34:42 | All post build plugins have finished |
| 23-Mar-2019 09:34:42 | Generating build results summary... |
| 23-Mar-2019 09:34:42 | Saving build results to disk... |
| 23-Mar-2019 09:34:42 | Logging substituted variables... |
| 23-Mar-2019 09:34:42 | Indexing build results... |
| 23-Mar-2019 09:34:42 | Finished building JB-JDJB-JOB1-78. |