Jalview Test RELEASE Channel build
Build: #14 failed
Job: Default Job failed
Build log
The build generated 2,091 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/jim does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/kira does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/koen does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/mungo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/phyre does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/thomas does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/toch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/vamsasDemo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Pre_R29_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/RNAalifold does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_4_branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/VamJalview does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1499 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2103 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/hmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/mchmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-bh does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-jim does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-toc does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/jalview-headless does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/clinvar does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/phyre2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/jim does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/kira does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/koen does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/mungo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/phyre does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/thomas does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/toch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/vamsasDemo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164 |
| 13-Nov-2024 00:00:01 | 9fb123c..416aad3 develop -> origin/develop |
| 13-Nov-2024 00:00:01 | 946589c..a8875a0 bug/JAL-4477_unmapped_filename_characters -> origin/bug/JAL-4477_unmapped_filename_characters |
| 13-Nov-2024 00:00:01 | * [new branch] bug/JAL-4482_gradle_task_linkCheck_fails -> origin/bug/JAL-4482_gradle_task_linkCheck_fails |
| 13-Nov-2024 00:00:01 | * [new branch] experiment/JAL-4386_JAL-4435_with_HSB_colours -> origin/experiment/JAL-4386_JAL-4435_with_HSB_colours |
| 13-Nov-2024 00:00:01 | * [new branch] experiment/JAL-4386_experimental_string_to_colour_scheme_methods -> origin/experiment/JAL-4386_experimental_string_to_colour_scheme_methods |
| 13-Nov-2024 00:00:01 | e1ff67b..1c79fdc feature/JAL-4386_JAL-4435_reformat_node_labels -> origin/feature/JAL-4386_JAL-4435_reformat_node_labels |
| 13-Nov-2024 00:00:01 | * [new branch] features/JAL-4489_cluster_pca_and_pasimap -> origin/features/JAL-4489_cluster_pca_and_pasimap |
| 13-Nov-2024 00:00:01 | * [new branch] features/JAL-4489_clustering_and_pca_pasimap_views -> origin/features/JAL-4489_clustering_and_pca_pasimap_views |
| 13-Nov-2024 00:00:01 | df63545..c6c46de improvement/JAL-4485_not_finding_chimerax_on_managed_desktop -> origin/improvement/JAL-4485_not_finding_chimerax_on_managed_desktop |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/2_5_1_rna_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1260_droldan does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1375_ncbiclient does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1550_intermine-sequence-annotation-client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1562_help-documentation-system-refactoring does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-1601-direct-jpred4-rest-service does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-2739_2.10.2b1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253-applet-113cc13-2019.08.28-js-optimizations does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253-applet-SwingJS-omnibus does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253-applet-test does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3253_applet_omnibus-BH does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3315_getdown_1_8_6_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3368_JavaScript_colors does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3437_load_project does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3866_RNAalifold-slivka-client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878-ws-overhaul does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878_web_services_overhaul does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878_web_services_overhaul_no_clover does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3878_ws-overhaul-3 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3927_ws_preferences_dialog_fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-3954_ebi_phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-4152-typed-singleton-provider does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-4154-platform-specific-constants does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JAL-429_phylip-file-support does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/JalScape/JAL-1332 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/20190123 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3560-bh-temp does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3560_bob_temp does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/JAL-3563-sync-TestNG-test-bob does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/demo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop-JAL-3559 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop-updated-gradle does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop.JAL-3445-BSML-reader does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop.JAL-3446.ctrlDown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/develop_j2s_v3_2_9_j11 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/gradle-minimal does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/gradle_with_goomph does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/gradle_with_inline_eclipse does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/jim/JAL-3253-JAL-3418 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-JS/update_java2script does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Jalview-jJS/JAL-3253-applet-JAL-3436 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Pre_R29_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/RNAalifold does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_3_BuildFix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_4_branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_5_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_6_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_7_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_8_1_Branch_i18n does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_8_2_Branch_i18n does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_8_2b1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_9_0b1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Release_2_9_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/Tcoffee_JAL-1065 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/VamJalview does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/JAL-3066_Jalview_212_slivka-integration does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/JAL-3362_Jalview_212_alpha does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/JAL-3899_deuniquify_refactor does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/Jalview_212_test_merged_buildgradle does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/alpha/merge_212_JalviewJS_2112 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/arnaud/JAL-3929_spike does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-1644_Finder-logic-improvement does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-1712annotationsWithFlanking does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-1988_quit_window_focus does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2023_cdsProjectError does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2339helpBullets does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2791selectVisibleFeatures does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2848resetColoursAmendFeatures does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2876byLabelThreshold does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-2907stockholmGapChar does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3003epsWithSelection does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3059groupBorder does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3083cancelAnnotationColour does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3178nonposFeatureExport_take2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3183groupColourOverwritten does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3184restoreGroupVisibility does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3195idResolution does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3201groupClustal does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3202zerosInProfile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3212columnSelectionWithHidden does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3215hydroColours does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3235sortPropertiesJava9-2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3365_failing_per_sequence_ss_tests does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3487-splash-JS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3489mapChainsFromFile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3490findSpanHiddenGaps does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3502wrappedScale does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3609_HiDPI_in_Linux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3613emblCDSTracking does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3633_Allow_HTTPS_proxy_configuration_for_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3648graphDragRelease does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3705saveProteinId does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3706virtualStopCodon does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3725overlappingVirtualFeatures does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3744_read_gzip_file_in_jalviewjs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3751_revisited does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3751overlappingCDS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3761_locateInFromTo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3774_splitFrameFinder does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3779setGroupProperties does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3788_autoOverviewClustal does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3807_jpred-with-slivka does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3809_ws_params_dialog_fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3810_annotation_ws_stopping_abruptly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3849_aacon-parameters does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3972_VAqua_for_Java11 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-3975_keyboard_input_stops_working_after_create_sequence_feature does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4026_fix_failingSeqPanel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4041_problems_with_3dbeacons_search does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4072_zip_slip_vulnerability_in_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4073_pfam_website_being_decommissioned does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4118_Fix_QuitHandlerTest does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4153_JvCacheableInputBoxTest_flaky_on_build_server does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4229_varna_helix_mapping_offby1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4313-make-visible-annot-fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment_with_renderpatch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4369_uniprot_in_jalviewJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/bug/JAL-4389-web-services-prefs-panel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/cherry-pick/JAL-3621_to_Release_2_11_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/codereviews/JAL-1990_IProgressIndicator_jalview.structure does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/development/Release_2_12_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/development/Release_2_12_Branch_JAL-4102_21126_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-1260_genbank_embl_flatfile_import_reloaded does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2087ensemblSpeciesAssist does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2422ChimeraX does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2611 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2674take2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2738GeneLocus does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2873ensemblSpeciesQuery does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2909bamfiles does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-2909bamfiles_features does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3081customAnnOrder does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3117_overviewFocusAlignment does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3148structureColourSchemes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3187viewstyleFlags does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3190jalviewjsChimera does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3251biotypedMappings does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3364splitFrameImage does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3390hideUnmappedStructure does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3400viewChainsMenu does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3442colourCaching does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3443findColorAsInt does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3469clinvarVCF does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3481_conservation_gap_threshold_preferences does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3499featuresFileMotifs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3515-slivka-preferences does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3686_slivka_client_js_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3690_callback-based-web-services does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3719_gapColourInAlignmentView_2.11.2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3730ensemblPingRetries does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3739_useFormFieldText does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3851_prototype_comms_for_jbrowse2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3874_add_source_jars_to_eclipse does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3954-ebi-phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-4227_Rfam2020_sslines does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-4392_consensus_secondary_structure does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/JAL-819undeleteAutoannotation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/feature/r2_11_2/JAL-3808_gff2_exonerate does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1499 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1499_MEGA does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1550_intermine-sequence-annotation-client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1601_jpred4rest does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-161_JAL-4172_nhx_tags_in_stockholm does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-161_JAL-4173_nhx_tags_in_stockholm does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1641_JSON does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1641_JSON-File-format does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1807java2Script does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-1978_msagrid does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2040_JAL-2137_phyre2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2055alternateFeatureColours does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2094_colourInterface does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2103 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2136_phyre2_integration does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2136_phyre2_integration_updated does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2253ensemblGenomes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2351jmolExchange does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2476dropFiles does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-250_hideredundantseqs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2909_bamImport2_11 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-2909_bamImport_2_11_2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3010ontologyFeatureSettings does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3020attributeValuePrompting does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3085_gnupdf does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3417_sdppred_calcs does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-345_selectFromFind does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3638_jumptonextindel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-3641_phredfromfastq does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4071_visibleFeaturesCounter does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4159_adjustable_gapparams_in_nw does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-629_with_threads_NOT_PASSING_TESTS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-666_exportoverview does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-722alignmentProperties does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-728alternateQuality does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-845linkedProteinDnaEditing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/JAL-845splitPaneMergeDevelop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/hmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/hmmer_statistics does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/mchmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/mchmmer_merge_JAL-1950 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r2_11_2/JAL-3922_jmolSelectionHighlighting does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r2_11_2_JAL-3829_3dbeacons does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r2_11_2_JAL-3929_3dbeacons does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/features/r_2_11_2_JAL-819_undeleteAutoAnnotation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/flakytests/JAL-4026_AlignViewportWaitforcalculations does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/hack/JAL-1617_workaround does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3289_new_launch_screens does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3393_Improved_DMG_background_image_beta_strand does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3416_FlatLaf_3.2.1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3416_GTK_look_and_feel does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3594_BG_and_UoD_logos_added does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3728_icons_for_independent_jframes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3826_gradle_configuration_for_intellij_idea does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-3848_slivka_0.8_updated_jslib does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-4054_Upgrade_to_install4j10 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-4064_M1_native_JRE_bundled_in_DMG does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/improvement/JAL-4245-return-null-from-getRootDataset does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-bh does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-bh-2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-jim does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-mungo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/j2s/develop-toc does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/jalview-headless does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/jims/work_on_2_12/JAL-3664_hmmer_ux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/CipresWebservices does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/PhylogenyViewer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/PhylogenyViewer_tabbedsupport does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/forester does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/kjvdh/features/testing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/Ben_trying_out_JSdevelop_with_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-2136_phyre2_integration does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3187_JAL-3010 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3210_developToJSDevelop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3285_mchmmer_with_211_develop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+JAL-3633+Release_2_11_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-3628+JAL-3608+JAL-3609+JAL-3541+Release_2_11_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/JAL-845_JAL-1640 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/merged_2_11_2_0_to_2_12 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmm/JAL-4199-web-services-testing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3878-ws-overhaul does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3878_ws-overhaul-3 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3954-ebi-phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-3954_ebi_phmmer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-4139-multi-harmony-patch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-4199-task-execution-update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/JAL-4199-web-services-testing does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/Release_2_12_ws_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/mmw/bug/JAL-4241-annotation-alignment-fix-slivka does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-1236_customClustalHeader does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2694_maptoallchainsworkaround does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2755_UniprotEnsemblSubnameWorkaround does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2914_relaxedGFFpragmas does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3562_fixAlignmentPanelTest does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3626_gradle_refinementsfrom2111 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3794_X_is_a_dna_rna_base_too does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3821_ena_rna_moltype does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-3847_gradleV7andV8Patches does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4079_scalability_bottlenecks does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4155_IdCanvas_getAlignPanel_fix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4195_calcWorker_for_2_11_2_6 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4216_negative_startend does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4222_quit_with_gui_export_cli_args does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/JAL-4232-disable-unavailable-services does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_10_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_10_2b1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_10_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_11_2_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/releases/Release_2_9_1_Branch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/reviews/features/JAL-2136_phyre2_integration_withJims does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-1950_hmmer3client does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-2778_changelookandfeelOpaqueWindows does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3548_exampleRestServer does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3622_Scanner_swingjs_J212_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3753_helphtmldupes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-3781_2d_scaling does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-4047/JAL-4048_columns_in_sequenceID does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/JAL-4055_retire_JDesktop does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/clinvar does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/javier_noseqhack does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/jims/Release_2_12_alpha does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/jims_dec_2022_212_merge does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/phyre2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spike/t_sne_paeMatrix does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/JAL-4113_javafx_with_Jalview_MSA does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/jim does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/kira does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/koen does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/mungo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/phyre does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/thomas does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/spikes/toch does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3042_remove_SimpleDocument_dependency does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3059_updateJmolandSwingJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3089annLabelsPopup does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3193mergeEnsemblGenomes does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3210_ben_testing_jalviewJS_building does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3281_Automatic_installers_download_table_generation does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3349_Support_cli_JRE_arguments_through_getdown does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3594_getdown_launcher_style does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3789_configurable_j2s_file_for_headless_transpile does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-3911_getdown_improvements does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_GA4_cherry_picked does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_Release_2_11_2_Branch_with_Plausible does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4001_firebase_test does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/JAL-4059_updateJmolandSwingJS does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/task/r2_11_2/JAL-3871_Jmol_dedup does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/tasks/JAL-3067_slivkaprep does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/tasks/JAL-3070_wsinterfaces does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/test/JAL-2422_testing_on_linux does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/testing/JAL-3577_jalviewversion_autoset does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/testpaches/JAL-2719_JAL-1264_testfails does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3066_updated_testng does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3066_updated_testng_2022-01-28 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-3949_update_code_to_use_log4j-2_directly does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/update/JAL-4108_212_testng_jar_update does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/remotes/origin/vamsasDemo does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 13-Nov-2024 00:00:01 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 13-Nov-2024 00:00:03 | Already on 'develop' |
| 13-Nov-2024 00:00:03 | Your branch is behind 'origin/develop' by 15 commits, and can be fast-forwarded. |
| 13-Nov-2024 00:00:03 | (use "git pull" to update your local branch) |
| 13-Nov-2024 00:00:03 | HEAD is now at 416aad3 JAL-4490 JAL-4474 release notes (preemptive but hopeful that it works!) |
| 13-Nov-2024 00:00:03 | Updated source code to revision: 416aad339a728afd5ca4c2a558b6a395dd53a3ac |
| 13-Nov-2024 00:00:03 | Finished task 'Checkout Default Repository' with result: Success |
| 13-Nov-2024 00:00:03 | Running pre-build action: VCS Version Collector |
| 13-Nov-2024 00:00:03 | Running pre-build action: Artifactory Release Staging |
| 13-Nov-2024 00:00:03 | Substituting variable: ${bamboo.CHANNEL} with TEST-RELEASE |
| 13-Nov-2024 00:00:03 | Substituting variable: ${bamboo.planKey} with JB-GTC |
| 13-Nov-2024 00:00:03 | Starting task 'Jalview ${bamboo.CHANNEL} distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 13-Nov-2024 00:00:03 | Bamboo Artifactory Plugin version: 2.6.2 |
| 13-Nov-2024 00:00:03 | Beginning to execute external process for build 'Jalview Builds - Getdown TEST_RELEASE Channel - Default Job #14 (JB-GTC-JOB1-14)' ... running command line: /home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=develop bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=develop bamboo_repository_revision_number=416aad339a728afd5ca4c2a558b6a395dd53a3ac bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-14 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GTC-JOB1 bamboo_shortPlanName=Getdown TEST_RELEASE Channel bamboo_planRepository_name=Jalview Git bamboo_repository_46497968_revision_number=416aad339a728afd5ca4c2a558b6a395dd53a3ac LOGNAME=bamboo bamboo_buildNumber=14 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GTC-JOB1-14 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_repository_46497968_git_username= bamboo_agentId=196609 bamboo_planName=Jalview Builds - Getdown TEST_RELEASE Channel bamboo_shortPlanKey=GTC bamboo_repository_46497968_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=416aad339a728afd5ca4c2a558b6a395dd53a3ac bamboo_buildTimeStamp=2024-11-13T00:00:00.130Z bamboo_repository_previous_revision_number=9fb123cb29ccdfe0b7b54352fc9e012edfaa1796 bamboo_planRepository_previousRevision=9fb123cb29ccdfe0b7b54352fc9e012edfaa1796 bamboo_repository_git_branch=develop bamboo_buildResultKey=JB-GTC-JOB1-14 bamboo_repository_branch_name=develop bamboo_buildPlanName=Jalview Builds - Getdown TEST_RELEASE Channel - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=416aad339a728afd5ca4c2a558b6a395dd53a3ac SHLVL=1 bamboo_CHANNEL=TEST-RELEASE bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_46497968_name=Jalview Git bamboo_repository_name=Jalview Git JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=develop bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=9fb123cb29ccdfe0b7b54352fc9e012edfaa1796 bamboo_planRepository_branchDisplayName=develop bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=develop _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-46301535 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 bamboo_repository_46497968_git_branch=develop bamboo_repository_46497968_branch_name=develop USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1 bamboo_planKey=JB-GTC bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_repository_46497968_previous_revision_number=9fb123cb29ccdfe0b7b54352fc9e012edfaa1796 HOME=/home/bamboo bamboo_planRepository_1_branchName=develop PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 13-Nov-2024 00:00:07 | Starting a Gradle Daemon (subsequent builds will be faster) |
| 13-Nov-2024 00:00:22 | |
| 13-Nov-2024 00:00:22 | > Configure project : |
| 13-Nov-2024 00:00:22 | Using properties from file './utils/channels/test-release/channel_gradle.properties' |
| 13-Nov-2024 00:00:22 | JALVIEW_VERSION is set to '2.11.4.2' |
| 13-Nov-2024 00:00:22 | HEADLESS BUILD |
| 13-Nov-2024 00:00:22 | J2S ENABLED |
| 13-Nov-2024 00:00:22 | Setting jalviewjs_ignore_transpile_errors to 'false' |
| 13-Nov-2024 00:00:23 | Using a TEST-RELEASE profile. |
| 13-Nov-2024 00:00:24 | eclipseDir exists |
| 13-Nov-2024 00:00:25 | |
| 13-Nov-2024 00:00:25 | > Task :clean |
| 13-Nov-2024 00:00:25 | > Task :cleanPackageDir |
| 13-Nov-2024 00:00:26 | > Task :getdownImagesCopy |
| 13-Nov-2024 00:00:26 | > Task :getdownImagesProcess |
| 13-Nov-2024 00:00:26 | > Task :getdownImages |
| 13-Nov-2024 00:00:29 | > Task :copyHelp |
| 13-Nov-2024 00:00:33 | > Task :buildIndices |
| 13-Nov-2024 00:00:34 | > Task :copyResources |
| 13-Nov-2024 00:00:34 | > Task :copyChannelResources |
| 13-Nov-2024 00:00:34 | |
| 13-Nov-2024 00:00:34 | > Task :createBuildProperties |
| 13-Nov-2024 00:00:34 | Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: |
| 13-Nov-2024 00:00:34 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:00:34 | |
| 13-Nov-2024 00:00:34 | > Task :buildResources |
| 13-Nov-2024 00:00:35 | > Task :copyDocs |
| 13-Nov-2024 00:00:35 | |
| 13-Nov-2024 00:00:35 | > Task :convertMdFiles |
| 13-Nov-2024 00:00:35 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/README-DMG_creation.html |
| 13-Nov-2024 00:00:35 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/releaseprocess.html |
| 13-Nov-2024 00:00:35 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html |
| 13-Nov-2024 00:00:35 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/building.html |
| 13-Nov-2024 00:00:35 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build/doc/jalview-projects.html |
| 13-Nov-2024 00:00:36 | |
| 13-Nov-2024 00:00:36 | > Task :releasesTemplates |
| 13-Nov-2024 00:00:36 | Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: |
| 13-Nov-2024 00:00:36 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:00:36 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:00:36 | Stripping rc/test/etc for 2_11_4_2-test |
| 13-Nov-2024 00:00:36 | Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/help/markdown/whatsnew/whatsnew-2_11_4_2.md |
| 13-Nov-2024 00:00:36 | |
| 13-Nov-2024 00:00:36 | > Task :prepare |
| 13-Nov-2024 00:00:38 | |
| 13-Nov-2024 00:00:38 | > Task :compileJava |
| 13-Nov-2024 00:00:38 | Setting target compatibility to 11 |
| 13-Nov-2024 00:01:00 | Note: Some input files use or override a deprecated API. |
| 13-Nov-2024 00:01:00 | Note: Recompile with -Xlint:deprecation for details. |
| 13-Nov-2024 00:01:00 | Note: Some input files use unchecked or unsafe operations. |
| 13-Nov-2024 00:01:00 | Note: Recompile with -Xlint:unchecked for details. |
| 13-Nov-2024 00:01:03 | |
| 13-Nov-2024 00:01:03 | > Task :processResources |
| 13-Nov-2024 00:01:03 | Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons: |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:03 | |
| 13-Nov-2024 00:01:03 | > Task :classes |
| 13-Nov-2024 00:01:05 | |
| 13-Nov-2024 00:01:05 | > Task :compileLinkCheck |
| 13-Nov-2024 00:01:05 | Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons: |
| 13-Nov-2024 00:01:05 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:05 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:05 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/utils'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 13-Nov-2024 00:01:07 | |
| 13-Nov-2024 00:01:07 | > Task :linkCheck |
| 13-Nov-2024 00:01:07 | Checking help file links |
| 13-Nov-2024 00:03:12 | Invalid anchor: experimental at line 92 of /help/html/menus/desktopMenu.html |
| 13-Nov-2024 00:03:12 | |
| 13-Nov-2024 00:03:12 | Results: |
| 13-Nov-2024 00:03:12 | 159 distinct help targets |
| 13-Nov-2024 00:03:12 | 159 help mappings |
| 13-Nov-2024 00:03:12 | 0 invalid targets |
| 13-Nov-2024 00:03:12 | 32 unused targets |
| 13-Nov-2024 00:03:12 | uniprotfetcher: html/features/uniprotsequencefetcher.html |
| 13-Nov-2024 00:03:12 | overviewprefs: html/features/preferences.html#overview |
| 13-Nov-2024 00:03:12 | cdnafeatures: html/features/codingfeatures.html |
| 13-Nov-2024 00:03:12 | startupprefs: html/features/preferences.html#startup |
| 13-Nov-2024 00:03:12 | ensemblfetch: html/features/ensemblsequencefetcher.html |
| 13-Nov-2024 00:03:12 | io.modellerpir: html/io/modellerpir.html |
| 13-Nov-2024 00:03:12 | structureandpaefromfile: html/features/structurechooser.html#loadfromfile |
| 13-Nov-2024 00:03:12 | pdbmcviewer: html/features/pdbviewer.html |
| 13-Nov-2024 00:03:12 | workingwithpae: html/features/paematrices.html |
| 13-Nov-2024 00:03:12 | groovy.colours: html/features/groovy.html#groovyColours |
| 13-Nov-2024 00:03:12 | seqmappings: html/features/seqmappings.html |
| 13-Nov-2024 00:03:12 | uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts |
| 13-Nov-2024 00:03:12 | splitframe.mirrorfonts: html/features/splitView.html#mirror |
| 13-Nov-2024 00:03:12 | subtMatrices.pam250: html/calculations/scorematrices.html#pam250 |
| 13-Nov-2024 00:03:12 | search: html/features/search.html |
| 13-Nov-2024 00:03:12 | viewingpdbs.reps: html/features/viewingpdbs.html#viewreps |
| 13-Nov-2024 00:03:12 | alformats: html/io/fileformats.html |
| 13-Nov-2024 00:03:12 | strucprefs: html/features/preferences.html#structure |
| 13-Nov-2024 00:03:12 | siftsmapping: html/features/siftsmapping.html |
| 13-Nov-2024 00:03:12 | chimera.annotxfer: html/features/chimera.html#annotxfer |
| 13-Nov-2024 00:03:12 | pdbfts: html/features/pdbsequencefetcher.html#pdbfts |
| 13-Nov-2024 00:03:12 | newkeys: html/features/newkeystrokes.html |
| 13-Nov-2024 00:03:12 | importvcf.attribs: html/features/importvcf.html#attribs |
| 13-Nov-2024 00:03:12 | seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature |
| 13-Nov-2024 00:03:12 | structuresvia3dbeacons: html/features/structurechooser.html#3dbeaconssearch |
| 13-Nov-2024 00:03:12 | jalarchive: html/features/jalarchive.html |
| 13-Nov-2024 00:03:12 | newsreader: html/webServices/newsreader.html |
| 13-Nov-2024 00:03:12 | jalviewcltool: html/features/commandline.html#script |
| 13-Nov-2024 00:03:12 | popMenuAddref: html/menus/popupMenu.html#addrefannot |
| 13-Nov-2024 00:03:12 | splitframe.virtualfeats: html/features/splitView.html#virtualfeats |
| 13-Nov-2024 00:03:12 | paematrixformat: html/io/paematrixformat.html |
| 13-Nov-2024 00:03:12 | overview: html/features/overview.html |
| 13-Nov-2024 00:03:12 | 0 invalid map urls |
| 13-Nov-2024 00:03:12 | 0 invalid image attributes |
| 13-Nov-2024 00:03:12 | 506 internal href links (110 with anchors) |
| 13-Nov-2024 00:03:12 | 0 invalid internal href links |
| 13-Nov-2024 00:03:12 | 1 invalid internal anchor links |
| 13-Nov-2024 00:03:12 | 112 external href links |
| 13-Nov-2024 00:03:12 | External links not verified as internet not available |
| 13-Nov-2024 00:03:12 | *** Failed *** |
| 13-Nov-2024 00:03:12 | |
| 13-Nov-2024 00:03:12 | > Task :linkCheck FAILED |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | FAILURE: Build failed with an exception. |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | * What went wrong: |
| 13-Nov-2024 00:03:13 | Execution failed for task ':linkCheck'. |
| 13-Nov-2024 00:03:13 | > Process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' finished with non-zero exit value 1 |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | * Try: |
| 13-Nov-2024 00:03:13 | > Run with --stacktrace option to get the stack trace. |
| 13-Nov-2024 00:03:13 | > Run with --info or --debug option to get more log output. |
| 13-Nov-2024 00:03:13 | > Run with --scan to get full insights. |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | * Get more help at https://help.gradle.org |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness. |
| 13-Nov-2024 00:03:13 | Please consult deprecation warnings for more details. |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | BUILD FAILED in 3m 9s |
| 13-Nov-2024 00:03:13 | 16 actionable tasks: 16 executed |
| 13-Nov-2024 00:03:13 | |
| 13-Nov-2024 00:03:13 | Failing task since return code of [/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=TEST-RELEASE -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GTC clean getdown shadowJar] was 1 while expected 0 |
| 13-Nov-2024 00:03:13 | Finished task 'Jalview ${bamboo.CHANNEL} distribution for Java 11' with result: Failed |
| 13-Nov-2024 00:03:13 | Running post build plugin 'NCover Results Collector' |
| 13-Nov-2024 00:03:13 | Running post build plugin 'Artifact Copier' |
| 13-Nov-2024 00:03:13 | Publishing an artifact: getdown_test-release_channel_tar |
| 13-Nov-2024 00:03:13 | Unable to publish artifact [getdown_test-release_channel_tar]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GTC-JOB1/build/website/docroot/getdown does not exist. |
| 13-Nov-2024 00:03:13 | The artifact hasn't been successfully published after 1.459 ms |
| 13-Nov-2024 00:03:13 | Publishing an artifact: test-release_channel_executable_jar |
| 13-Nov-2024 00:03:13 | Unable to publish artifact [test-release_channel_executable_jar]: |
| 13-Nov-2024 00:03:13 | The artifact hasn't been successfully published after 31.95 ms |
| 13-Nov-2024 00:03:13 | Publishing an artifact: test-release_jalview-js-site_tar |
| 13-Nov-2024 00:03:13 | Unable to publish artifact [test-release_jalview-js-site_tar]: |
| 13-Nov-2024 00:03:13 | The artifact hasn't been successfully published after 1.655 ms |
| 13-Nov-2024 00:03:13 | Running post build plugin 'Artifactory Release Management Staging' |
| 13-Nov-2024 00:03:13 | Running post build plugin 'Artifactory Build Info Copier' |
| 13-Nov-2024 00:03:13 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 13-Nov-2024 00:03:13 | Running post build plugin 'npm Cache Cleanup' |
| 13-Nov-2024 00:03:13 | Running post build plugin 'Clover Results Collector' |
| 13-Nov-2024 00:03:13 | Running post build plugin 'Docker Container Cleanup' |
| 13-Nov-2024 00:03:13 | Finalising the build... |
| 13-Nov-2024 00:03:13 | Stopping timer. |
| 13-Nov-2024 00:03:13 | Build JB-GTC-JOB1-14 completed. |
| 13-Nov-2024 00:03:13 | Running on server: post build plugin 'NCover Results Collector' |
| 13-Nov-2024 00:03:13 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 13-Nov-2024 00:03:13 | Running on server: post build plugin 'Clover Delta Calculator' |
| 13-Nov-2024 00:03:13 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 13-Nov-2024 00:03:13 | All post build plugins have finished |
| 13-Nov-2024 00:03:13 | Generating build results summary... |
| 13-Nov-2024 00:03:13 | Saving build results to disk... |
| 13-Nov-2024 00:03:13 | Logging substituted variables... |
| 13-Nov-2024 00:03:13 | Indexing build results... |
| 13-Nov-2024 00:03:13 | Finished building JB-GTC-JOB1-14. |