Build: #1 failed
Job: Default Job failed
Build log
The build generated 1,126 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log
| 04-Dec-2025 16:25:58 | overview: html/features/overview.html |
| 04-Dec-2025 16:25:58 | 0 invalid map urls |
| 04-Dec-2025 16:25:58 | 0 invalid image attributes |
| 04-Dec-2025 16:25:58 | 520 internal href links (119 with anchors) |
| 04-Dec-2025 16:25:58 | 0 invalid internal href links |
| 04-Dec-2025 16:25:58 | 0 invalid internal anchor links |
| 04-Dec-2025 16:25:58 | 113 external href links |
| 04-Dec-2025 16:25:58 | External links not verified as internet not available |
| 04-Dec-2025 16:25:58 | *** Success *** |
| 04-Dec-2025 16:26:00 | |
| 04-Dec-2025 16:26:00 | > Task :jar |
| 04-Dec-2025 16:26:00 | > Task :syncJars |
| 04-Dec-2025 16:26:00 | > Task :makeDist |
| 04-Dec-2025 16:26:07 | > Task :shadowJar |
| 04-Dec-2025 16:26:07 | |
| 04-Dec-2025 16:26:07 | > Task :getdownImagesCopy |
| 04-Dec-2025 16:26:07 | Execution optimizations have been disabled for task ':getdownImagesCopy' to ensure correctness due to the following reasons: |
| 04-Dec-2025 16:26:07 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/utils/channels/default/images'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 04-Dec-2025 16:26:08 | |
| 04-Dec-2025 16:26:08 | > Task :getdownImagesProcess |
| 04-Dec-2025 16:26:08 | > Task :getdownImages |
| 04-Dec-2025 16:26:08 | > Task :getdownWebsiteBuild |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | > Task :getdownDigest |
| 04-Dec-2025 16:26:09 | Generating digest file './build/website/docroot/getdown/default/11/digest.txt'... |
| 04-Dec-2025 16:26:09 | Generating digest file './build/website/docroot/getdown/default/11/digest2.txt'... |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | > Task :getdown |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness. |
| 04-Dec-2025 16:26:09 | Please consult deprecation warnings for more details. |
| 04-Dec-2025 16:26:09 | |
| 04-Dec-2025 16:26:09 | BUILD SUCCESSFUL in 2m 38s |
| 04-Dec-2025 16:26:09 | 22 actionable tasks: 21 executed, 1 up-to-date |
| 04-Dec-2025 16:26:09 | 2025/12/04 16:26:08:559 WARNING Starting without install4j classes |
| 04-Dec-2025 16:26:09 | 2025/12/04 16:26:09:138 WARNING Starting without install4j classes |
| 04-Dec-2025 16:26:10 | Finished task 'Jalview distribution for Java 11' with result: Success |
| 04-Dec-2025 16:26:10 | Substituting variable: ${bamboo.planKey} with JB-GPC656 |
| 04-Dec-2025 16:26:10 | Starting task 'Jalview distribution for Java 8' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 04-Dec-2025 16:26:10 | Bamboo Artifactory Plugin version: 2.6.2 |
| 04-Dec-2025 16:26:10 | Beginning to execute external process for build 'Jalview Builds - Getdown Plan Channel - bug-JAL-4107_jalviewjs_fixes_on_2_12_branch - Default Job #1 (JB-GPC656-JOB1-1)' ... running command line: /home/bamboo/buildtools/gradle/bin/gradle -x test -x clean -PCHANNEL=BUILD -PJAVA_VERSION=1.8 -Pbamboo_planKey=JB-GPC656 shadowJar getdown ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_dependency_parent_0=JB-GDB734-1 bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_dependency_parent_total=1 bamboo_planRepository_1_branchDisplayName=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_repository_revision_number=e0875267ed4b699db969bf10b30bafe83a1cbd7d bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GPC656-JOB1-1 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_46498619_revision_number=e0875267ed4b699db969bf10b30bafe83a1cbd7d bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GPC656-JOB1 bamboo_shortPlanName=bug-JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=1 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GPC656-JOB1-1 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Getdown Plan Channel - bug-JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_shortPlanKey=GPC656 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=e0875267ed4b699db969bf10b30bafe83a1cbd7d bamboo_buildTimeStamp=2025-12-04T16:23:23.581Z bamboo_repository_git_branch=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_buildResultKey=JB-GPC656-JOB1-1 bamboo_repository_branch_name=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_buildPlanName=Jalview Builds - Getdown Plan Channel - bug-JAL-4107_jalviewjs_fixes_on_2_12_branch - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=e0875267ed4b699db969bf10b30bafe83a1cbd7d SHLVL=1 bamboo_repository_46498619_branch_name=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=BUILD -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GPC656 clean shadowJar getdown JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ bamboo_repository_46498619_git_branch=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_repository_46498619_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_branchDisplayName=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-46302807 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1 bamboo_repository_46498619_name=Jalview Gitlab bamboo_planKey=JB-GPC656 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_46498619_git_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=bug/JAL-4107_jalviewjs_fixes_on_2_12_branch PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 04-Dec-2025 16:26:11 | |
| 04-Dec-2025 16:26:11 | > Configure project : |
| 04-Dec-2025 16:26:11 | Using properties from file './utils/channels/default/channel_gradle.properties' |
| 04-Dec-2025 16:26:11 | JALVIEW_VERSION is set to '2.12.0' |
| 04-Dec-2025 16:26:11 | HEADLESS BUILD |
| 04-Dec-2025 16:26:11 | J2S ENABLED |
| 04-Dec-2025 16:26:11 | Using a BUILD profile. |
| 04-Dec-2025 16:26:11 | eclipseDir exists |
| 04-Dec-2025 16:26:11 | |
| 04-Dec-2025 16:26:11 | > Task :copyHelp UP-TO-DATE |
| 04-Dec-2025 16:26:13 | > Task :buildIndices |
| 04-Dec-2025 16:26:13 | > Task :copyResources UP-TO-DATE |
| 04-Dec-2025 16:26:13 | > Task :copyChannelResources UP-TO-DATE |
| 04-Dec-2025 16:26:13 | |
| 04-Dec-2025 16:26:13 | > Task :createBuildProperties |
| 04-Dec-2025 16:26:13 | Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: |
| 04-Dec-2025 16:26:13 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 04-Dec-2025 16:26:13 | |
| 04-Dec-2025 16:26:13 | > Task :buildResources |
| 04-Dec-2025 16:26:13 | > Task :copyDocs |
| 04-Dec-2025 16:26:13 | |
| 04-Dec-2025 16:26:13 | > Task :convertMdFiles |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/README-DMG_creation.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/releaseprocess.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/JalviewJS-API.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/building.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/addingWebClient.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/jalview-projects.html |
| 04-Dec-2025 16:26:13 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/doc_build/doc/JalviewJS-startupParams.html |
| 04-Dec-2025 16:26:13 | |
| 04-Dec-2025 16:26:13 | > Task :releasesTemplates |
| 04-Dec-2025 16:26:13 | Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: |
| 04-Dec-2025 16:26:13 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 04-Dec-2025 16:26:13 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 04-Dec-2025 16:26:13 | Stripping rc/test/etc for 2_12_0 |
| 04-Dec-2025 16:26:13 | Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/help/markdown/whatsnew/whatsnew-2_12_0.md |
| 04-Dec-2025 16:26:13 | |
| 04-Dec-2025 16:26:13 | > Task :prepare |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/WSClient.java:180: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var stage = jobParams.showRunDialog(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/params/ParamDatastoreI.java:39: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var presets = getPresets(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/params/ParamDatastoreI.java:51: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var parameters = getServiceParameters(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java:67: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var listener : serviceListeners) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:77: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var parameters = service.getParameters(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:78: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var request = new RequestValues(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:129: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var jobId = client.submitJob(service, request); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:254: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | final var mimetype = f.getMediaType(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/Jws2Discoverer.java:142: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var listener : serviceListeners) { |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/Jws2Discoverer.java:360: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var discoverer = getInstance(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:63: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var service : services) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:70: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var service : interactiveServices) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:74: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var preferred = getPreferredServiceFor(alignFrame, service.getName()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:77: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var ph = alternates.getOrDefault(service.getName(), new ArrayList<>()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/SequenceAnnotationWSClient.java:104: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | final var worker = tmpworker; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/Desktop.java:3260: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var tasks = new ArrayList<Future<?>>(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/Desktop.java:3276: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var f = new FutureTask<Void>(discoverer, null); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:927: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var menu = AlignFrame.this.slivkaMenu; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:936: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var menu = AlignFrame.this.ebiMenu; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:945: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var menu = AlignFrame.this.jpred4Menu; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1235: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1268: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1301: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1333: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:5154: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var secstrpred = Discoverer.getServices().get("SecStrPred"); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:5159: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var menuProvider = Discoverer.getServiceClient(sh); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/datamodel/ContiguousI.java:35: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var range : ranges) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/datamodel/SequenceI.java:415: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var sequence = getDatasetSequence(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/datamodel/AnnotatedCollectionI.java:79: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var annots = getAlignmentAnnotation(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:63: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var seqInfo = SeqsetUtils.SeqCharacterHash(seq); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:69: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = new SecStructPredJob(seq, delMap, seqInfo); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:80: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = jobs.get(0); // There should be exactly one job |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:81: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var status = job.getStatus(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java:67: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var sequenceInfo = SeqsetUtils.uniquify(sequences, true); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java:71: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var nonEmptySeqs = SeqsetUtils.getNonEmptySequenceSet(sequences); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java:72: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = new SecStructPredJob(Arrays.asList(nonEmptySeqs), |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java:82: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = jobs.get(0); // There shouldn't be more than one job |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java:83: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var status = job.getStatus(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:42: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var sequence = view.getVisibleAlignment('-').getSequenceAt(0); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:43: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var seq = new Sequence(sequence.getName(), |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:45: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = new BaseJob(List.of(seq)) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:60: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = jobs.get(0); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:61: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var status = job.getStatus(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:66: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var outputAlignment = client.getAlignment(job.getServerJob()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:67: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var querySeq = job.getInputSequences().get(0).deriveSequence(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:70: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var annot : outputAlignment.getAlignmentAnnotation()) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:89: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var sequenceBuilder = new StringBuilder(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java:90: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var index = 0; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerAction.java:63: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var task = createTask(viewport, args, credentials); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerAction.java:65: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var executor = PollingTaskExecutor.fromPool(viewport.getServiceExecutor()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/hmmer/PhmmerAction.java:66: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var future = executor.submit(task); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/annotation/AnnotationJob.java:134: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var gaps = seq.gapBitset(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/annotation/AlignCalcWorkerAdapter.java:44: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var newAnnot = alignViewport.getAlignment() |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/annotation/AnnotationTask.java:100: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var job = jobs.get(0); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/annotation/AnnotationTask.java:153: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var annotation : annotations) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/annotation/AnnotationTask.java:170: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var size = Math.max(annotations.length, gapMap.length); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/api/ActionI.java:56: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var name = getName(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/alignment/AlignmentTask.java:148: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var seq: alnSeqs) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/alignment/AlignmentTask.java:157: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var seq: alnSeqs) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:103: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var jobListener = new DelegateJobEventListener<>(eventHandler); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:104: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var job : jobs) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:113: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var retryCounter = 0; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:143: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var jobRef = webClient.submit(job.getInputSequences(), args, credentials); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:171: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var serverJob = job.getServerJob(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:193: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var job : jobs) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:309: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var statusName = status != null ? status.name() : "UNSET"; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:97: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var map = service.isInteractive() ? interactiveServices : oneshotServices; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:101: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var allKeysSet = new HashSet<>(oneshotServices.keySet()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:103: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var allKeys = new ArrayList<>(allKeysSet); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:107: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var categoryMenu = new JMenu(category); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:108: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var oneshot = oneshotServices.get(category); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:111: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var interactive = interactiveServices.get(category); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:128: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var res = ws1.getUrl().toString().compareTo(ws2.getUrl().toString()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:142: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var item = new JMenuItem(host.toString()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:150: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var actionsByCategory = new TreeMap<String, List<ActionI<?>>>(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:159: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var entry : actionsByCategory.entrySet()) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:161: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var category = entry.getKey(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:162: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var actions = entry.getValue(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:164: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var atMenu = category.isEmpty() ? menu : new JMenu(String.format("%s with %s", category, service.getName())); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:180: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var enabled = isActionEnabled(action); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:181: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var service = action.getWebService(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:196: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var datastore = service.getParamDatastore(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:221: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var presets = datastore.getPresets(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:224: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | final var presetsMenu = new JMenu(MessageManager.formatMessage( |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:230: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var preset : presets) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:232: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var item = new JMenuItem(preset.getName()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:266: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var service : services) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:271: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var entry : byServiceName.entrySet()) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:273: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var group = new InteractiveServiceEntryGroup(entry.getKey(), entry.getValue()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:308: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var menu = alternativesMenu; |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:310: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var res = ws1.getUrl().toString().compareTo(ws2.getUrl().toString()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:316: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var service : services) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:324: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var item = new JMenuItem(host.toString()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:331: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var actionsByCategory = new TreeMap<String, List<ActionI<?>>>(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:341: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var atMenu = key.isEmpty() ? menu : new JMenu(key + " with " + service.getName()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:350: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var item = new JMenuItem(action.getFullName()); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:361: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | final var arguments = new ArrayList<ArgumentI>(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:368: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var l : urlItem.getActionListeners()) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:375: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | for (var l : serviceItem.getActionListeners()) |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:385: warning: as of release 10, 'var' is a restricted local variable type and cannot be used for type declarations or as the element type of an array |
| 04-Dec-2025 16:26:15 | var datastore = service.getParamDatastore(); |
| 04-Dec-2025 16:26:15 | ^ |
| 04-Dec-2025 16:26:15 | |
| 04-Dec-2025 16:26:15 | > Task :compileJava |
| 04-Dec-2025 16:26:15 | Setting target compatibility to 1.8 |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/datamodel/SequenceI.java:415: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var sequence = getDatasetSequence(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: interface SequenceI |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/datamodel/AnnotatedCollectionI.java:79: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var annots = getAlignmentAnnotation(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: interface AnnotatedCollectionI |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/Desktop.java:3260: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var tasks = new ArrayList<Future<?>>(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class Desktop |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/Desktop.java:3276: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var f = new FutureTask<Void>(discoverer, null); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class Desktop |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:927: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var menu = AlignFrame.this.slivkaMenu; |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:936: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var menu = AlignFrame.this.ebiMenu; |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:945: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var menu = AlignFrame.this.jpred4Menu; |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1235: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1268: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1301: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:1333: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var args2 = params.getJobParams(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:5154: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var secstrpred = Discoverer.getServices().get("SecStrPred"); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/gui/AlignFrame.java:5159: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var menuProvider = Discoverer.getServiceClient(sh); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class AlignFrame |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:97: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var map = service.isInteractive() ? interactiveServices : oneshotServices; |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:101: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var allKeysSet = new HashSet<>(oneshotServices.keySet()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:103: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var allKeys = new ArrayList<>(allKeysSet); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:107: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var categoryMenu = new JMenu(category); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:108: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var oneshot = oneshotServices.get(category); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:111: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var interactive = interactiveServices.get(category); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:128: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var res = ws1.getUrl().toString().compareTo(ws2.getUrl().toString()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:142: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var item = new JMenuItem(host.toString()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:150: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var actionsByCategory = new TreeMap<String, List<ActionI<?>>>(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:159: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | for (var entry : actionsByCategory.entrySet()) |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:161: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var category = entry.getKey(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:162: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var actions = entry.getValue(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:164: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var atMenu = category.isEmpty() ? menu : new JMenu(String.format("%s with %s", category, service.getName())); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:168: error: incompatible types: cannot infer type-variable(s) T#1,U,T#2,T#3 |
| 04-Dec-2025 16:26:16 | actions.sort(Comparator.comparing( |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | (argument mismatch; invalid method reference |
| 04-Dec-2025 16:26:16 | method getName in interface ActionI<R> cannot be applied to given types |
| 04-Dec-2025 16:26:16 | required: no arguments |
| 04-Dec-2025 16:26:16 | found: Object |
| 04-Dec-2025 16:26:16 | reason: actual and formal argument lists differ in length) |
| 04-Dec-2025 16:26:16 | where T#1,U,T#2,T#3,R are type-variables: |
| 04-Dec-2025 16:26:16 | T#1 extends Object declared in method <T#1,U>comparing(Function<? super T#1,? extends U>,Comparator<? super U>) |
| 04-Dec-2025 16:26:16 | U extends Object declared in method <T#1,U>comparing(Function<? super T#1,? extends U>,Comparator<? super U>) |
| 04-Dec-2025 16:26:16 | T#2 extends Object declared in method <T#2>nullsFirst(Comparator<? super T#2>) |
| 04-Dec-2025 16:26:16 | T#3 extends Comparable<? super T#3> declared in method <T#3>naturalOrder() |
| 04-Dec-2025 16:26:16 | R extends Object declared in interface ActionI |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:180: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var enabled = isActionEnabled(action); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:181: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var service = action.getWebService(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:196: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var datastore = service.getParamDatastore(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:221: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var presets = datastore.getPresets(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:224: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | final var presetsMenu = new JMenu(MessageManager.formatMessage( |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:230: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | for (var preset : presets) |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:232: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var item = new JMenuItem(preset.getName()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:266: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | for (var service : services) |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:271: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | for (var entry : byServiceName.entrySet()) |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:273: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var group = new InteractiveServiceEntryGroup(entry.getKey(), entry.getValue()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:308: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var menu = alternativesMenu; |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:310: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var res = ws1.getUrl().toString().compareTo(ws2.getUrl().toString()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:316: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | for (var service : services) |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:324: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var item = new JMenuItem(host.toString()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:331: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var actionsByCategory = new TreeMap<String, List<ActionI<?>>>(); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:16 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:341: error: cannot find symbol |
| 04-Dec-2025 16:26:16 | var atMenu = key.isEmpty() ? menu : new JMenu(key + " with " + service.getName()); |
| 04-Dec-2025 16:26:16 | ^ |
| 04-Dec-2025 16:26:16 | symbol: class var |
| 04-Dec-2025 16:26:16 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:346: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | a -> a.getName(), |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: method getName() |
| 04-Dec-2025 16:26:17 | location: variable a of type Object |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:350: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var item = new JMenuItem(action.getFullName()); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:361: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | final var arguments = new ArrayList<ArgumentI>(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:368: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | for (var l : urlItem.getActionListeners()) |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:375: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | for (var l : serviceItem.getActionListeners()) |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:385: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var datastore = service.getParamDatastore(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:387: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | for (var l : editParamsItem.getActionListeners()) |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:413: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var item = new JMenuItem(preset.getName()); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager.InteractiveServiceEntryGroup |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:444: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var isNa = frame.getViewport().getAlignment().isNucleotide(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:457: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var _action = (AlignmentAction) action; |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:458: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var handler = new AlignmentServiceGuiHandler(_action, frame); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:460: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var executor = PollingTaskExecutor.fromPool(viewport.getServiceExecutor()); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:462: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var future = executor.submit(task); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:468: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var calcManager = viewport.getCalcManager(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:470: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var _action = (AnnotationAction) action; |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:471: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var worker = new AlignCalcWorkerAdapter(viewport, frame.alignPanel, |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:473: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var handler = new AnnotationServiceGuiHandler(_action, frame); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:475: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | for (var w : calcManager.getWorkers()) |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:491: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var _action = (BaseAction<AlignmentI>) action; |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:492: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var handler = new SearchServiceGuiHandler(_action, frame); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:493: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var task = (BaseTask<?, AlignmentI>) _action // FIXME: unsafe cast |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:495: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var executor = PollingTaskExecutor.fromPool(viewport.getServiceExecutor()); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:497: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var future = executor.submit(task); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:506: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var task = action.createTask(viewport, args, credentials); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java:523: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var stage = jobParams.showRunDialog(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: class WebServicesMenuManager |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/api/ActionI.java:56: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var name = getName(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: interface ActionI<R> |
| 04-Dec-2025 16:26:17 | where R is a type-variable: |
| 04-Dec-2025 16:26:17 | R extends Object declared in interface ActionI |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/params/ParamDatastoreI.java:39: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var presets = getPresets(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: interface ParamDatastoreI |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/params/ParamDatastoreI.java:51: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | var parameters = getServiceParameters(); |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: interface ParamDatastoreI |
| 04-Dec-2025 16:26:17 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/datamodel/ContiguousI.java:35: error: cannot find symbol |
| 04-Dec-2025 16:26:17 | for (var range : ranges) |
| 04-Dec-2025 16:26:17 | ^ |
| 04-Dec-2025 16:26:17 | symbol: class var |
| 04-Dec-2025 16:26:17 | location: interface ContiguousI |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/WSClient.java:180: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var stage = jobParams.showRunDialog(); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class WSClient |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/analysis/SeqsetUtils.java:84: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var pdbEntries = seq.getAllPDBEntries(); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SeqsetUtils |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:77: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var parameters = service.getParameters(); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SlivkaWSInstance |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:78: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var request = new RequestValues(); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SlivkaWSInstance |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:129: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var jobId = client.submitJob(service, request); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SlivkaWSInstance |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java:254: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | final var mimetype = f.getMediaType(); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SlivkaWSInstance |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java:67: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | for (var listener : serviceListeners) |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SlivkaWSDiscoverer |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/Jws2Discoverer.java:142: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | for (var listener : serviceListeners) { |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class Jws2Discoverer |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/Jws2Discoverer.java:360: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var discoverer = getInstance(); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class Jws2Discoverer |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:63: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | for (var service : services) |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class PreferredServiceRegistry |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:70: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | for (var service : interactiveServices) |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class PreferredServiceRegistry |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:74: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var preferred = getPreferredServiceFor(alignFrame, service.getName()); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class PreferredServiceRegistry |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java:77: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | var ph = alternates.getOrDefault(service.getName(), new ArrayList<>()); |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class PreferredServiceRegistry |
| 04-Dec-2025 16:26:18 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws/jws2/SequenceAnnotationWSClient.java:104: error: cannot find symbol |
| 04-Dec-2025 16:26:18 | final var worker = tmpworker; |
| 04-Dec-2025 16:26:18 | ^ |
| 04-Dec-2025 16:26:18 | symbol: class var |
| 04-Dec-2025 16:26:18 | location: class SequenceAnnotationWSClient |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:103: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var jobListener = new DelegateJobEventListener<>(eventHandler); |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:104: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | for (var job : jobs) |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:113: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var retryCounter = 0; |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:143: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var jobRef = webClient.submit(job.getInputSequences(), args, credentials); |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:171: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var serverJob = job.getServerJob(); |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:193: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | for (var job : jobs) |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:309: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var statusName = status != null ? status.name() : "UNSET"; |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class BaseTask<T,R> |
| 04-Dec-2025 16:26:19 | where T,R are type-variables: |
| 04-Dec-2025 16:26:19 | T extends BaseJob declared in class BaseTask |
| 04-Dec-2025 16:26:19 | R extends Object declared in class BaseTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:63: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var seqInfo = SeqsetUtils.SeqCharacterHash(seq); |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class SecStructPredPDBSearchTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:69: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var job = new SecStructPredJob(seq, delMap, seqInfo); |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class SecStructPredPDBSearchTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:80: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var job = jobs.get(0); // There should be exactly one job |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class SecStructPredPDBSearchTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:81: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | var status = job.getStatus(); |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class SecStructPredPDBSearchTask |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java:40: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | for (var listener : listeners) |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class TaskEventSupport<T> |
| 04-Dec-2025 16:26:19 | where T is a type-variable: |
| 04-Dec-2025 16:26:19 | T extends Object declared in class TaskEventSupport |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java:46: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | for (var listener : listeners) |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class TaskEventSupport<T> |
| 04-Dec-2025 16:26:19 | where T is a type-variable: |
| 04-Dec-2025 16:26:19 | T extends Object declared in class TaskEventSupport |
| 04-Dec-2025 16:26:19 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java:52: error: cannot find symbol |
| 04-Dec-2025 16:26:19 | for (var listener : listeners) |
| 04-Dec-2025 16:26:19 | ^ |
| 04-Dec-2025 16:26:19 | symbol: class var |
| 04-Dec-2025 16:26:19 | location: class TaskEventSupport<T> |
| 04-Dec-2025 16:26:19 | where T is a type-variable: |
| 04-Dec-2025 16:26:19 | T extends Object declared in class TaskEventSupport |
| 04-Dec-2025 16:26:21 | Note: Some input files use or override a deprecated API. |
| 04-Dec-2025 16:26:21 | Note: Recompile with -Xlint:deprecation for details. |
| 04-Dec-2025 16:26:21 | Note: Some input files use unchecked or unsafe operations. |
| 04-Dec-2025 16:26:21 | Note: Recompile with -Xlint:unchecked for details. |
| 04-Dec-2025 16:26:21 | 100 errors |
| 04-Dec-2025 16:26:21 | 100 warnings |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | FAILURE: Build failed with an exception. |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | * What went wrong: |
| 04-Dec-2025 16:26:21 | Execution failed for task ':compileJava'. |
| 04-Dec-2025 16:26:21 | > Compilation failed; see the compiler error output for details. |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | * Try: |
| 04-Dec-2025 16:26:21 | > Run with --stacktrace option to get the stack trace. |
| 04-Dec-2025 16:26:21 | > Run with --info or --debug option to get more log output. |
| 04-Dec-2025 16:26:21 | > Run with --scan to get full insights. |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | * Get more help at https://help.gradle.org |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | BUILD FAILED in 9s |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | > Task :compileJava FAILED |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | Execution optimizations have been disabled for 2 invalid unit(s) of work during this build to ensure correctness. |
| 04-Dec-2025 16:26:21 | Please consult deprecation warnings for more details. |
| 04-Dec-2025 16:26:21 | 9 actionable tasks: 6 executed, 3 up-to-date |
| 04-Dec-2025 16:26:21 | |
| 04-Dec-2025 16:26:21 | Failing task since return code of [/home/bamboo/buildtools/gradle/bin/gradle -x test -x clean -PCHANNEL=BUILD -PJAVA_VERSION=1.8 -Pbamboo_planKey=JB-GPC656 shadowJar getdown] was 1 while expected 0 |
| 04-Dec-2025 16:26:21 | Finished task 'Jalview distribution for Java 8' with result: Failed |
| 04-Dec-2025 16:26:21 | Running post build plugin 'NCover Results Collector' |
| 04-Dec-2025 16:26:21 | Running post build plugin 'Artifact Copier' |
| 04-Dec-2025 16:26:21 | Publishing an artifact: Jalview executables |
| 04-Dec-2025 16:26:21 | Finished publishing of artifact Shared artifact: [Jalview executables], pattern: [**/*] anchored at: [build/libs] in 88.62 ms |
| 04-Dec-2025 16:26:21 | Publishing an artifact: install4j installers |
| 04-Dec-2025 16:26:21 | Unable to publish artifact [install4j installers]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/install4j does not exist. |
| 04-Dec-2025 16:26:21 | The artifact hasn't been successfully published after 91.85 μs |
| 04-Dec-2025 16:26:21 | Publishing an artifact: getdown-channel |
| 04-Dec-2025 16:26:21 | Unable to publish artifact [getdown-channel]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/getdown/website does not exist. |
| 04-Dec-2025 16:26:21 | The artifact hasn't been successfully published after 31.11 μs |
| 04-Dec-2025 16:26:21 | Publishing an artifact: Jalview getdown launcher |
| 04-Dec-2025 16:26:21 | Unable to publish artifact [Jalview getdown launcher]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/getdown/files does not exist. |
| 04-Dec-2025 16:26:21 | The artifact hasn't been successfully published after 26.43 μs |
| 04-Dec-2025 16:26:21 | Publishing an artifact: getdown build for website |
| 04-Dec-2025 16:26:21 | Finished publishing of artifact Shared artifact: [getdown build for website], pattern: [**/*] anchored at: [build/website/docroot/getdown] in 120.9 ms |
| 04-Dec-2025 16:26:21 | Publishing an artifact: getdown build for archive |
| 04-Dec-2025 16:26:21 | Unable to publish artifact [getdown build for archive]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/build/website/docroot/old does not exist. |
| 04-Dec-2025 16:26:21 | The artifact hasn't been successfully published after 127.2 μs |
| 04-Dec-2025 16:26:21 | Running post build plugin 'Artifactory Release Management Staging' |
| 04-Dec-2025 16:26:21 | Running post build plugin 'Artifactory Build Info Copier' |
| 04-Dec-2025 16:26:21 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 04-Dec-2025 16:26:21 | Running post build plugin 'npm Cache Cleanup' |
| 04-Dec-2025 16:26:21 | Running post build plugin 'Clover Results Collector' |
| 04-Dec-2025 16:26:21 | Running post build plugin 'Docker Container Cleanup' |
| 04-Dec-2025 16:26:21 | Finalising the build... |
| 04-Dec-2025 16:26:21 | Stopping timer. |
| 04-Dec-2025 16:26:21 | Build JB-GPC656-JOB1-1 completed. |
| 04-Dec-2025 16:26:21 | Running on server: post build plugin 'NCover Results Collector' |
| 04-Dec-2025 16:26:21 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 04-Dec-2025 16:26:21 | Running on server: post build plugin 'Clover Delta Calculator' |
| 04-Dec-2025 16:26:21 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 04-Dec-2025 16:26:21 | All post build plugins have finished |
| 04-Dec-2025 16:26:21 | Generating build results summary... |
| 04-Dec-2025 16:26:21 | Saving build results to disk... |
| 04-Dec-2025 16:26:21 | Logging substituted variables... |
| 04-Dec-2025 16:26:21 | Indexing build results... |
| 04-Dec-2025 16:26:21 | Finished building JB-GPC656-JOB1-1. |