Build #2

Build: #2 failed Child of JB-GDB734-3

Build result summary

Details

Completed
Duration
5 minutes
Labels
None
Agent
Default Agent
Revision
b80719bcafaf18f88875dd6956bb3bd47ff21bed b80719bcafaf18f88875dd6956bb3bd47ff21bed
Failing since
#1 (Child of JB-GDB734-1)

No failed tests found, a possible compilation error occurred.

Responsible

This build has been failing since #1
No one has taken responsibility

Code commits

Author Commit Message Commit date
Ben Soares <b.soares@dundee.ac.uk> Ben Soares <b.soares@dundee.ac.uk> b80719bcafaf18f88875dd6956bb3bd47ff21bed b80719bcafaf18f88875dd6956bb3bd47ff21bed JAL-4107 Add an instanceExists() non-instantiating check to ApplicationSingletonProvider and use for Jalview class.  Change all tests for Jalview.getInstance() == null to Jalview.instanceExists().  Some Eclipse formatting has also happened in AlignExportOptions.java and Console.java.
Ben Soares <b.soares@dundee.ac.uk> Ben Soares <b.soares@dundee.ac.uk> 39c7453fadcc29164b49c703f6c22068cace576c 39c7453fadcc29164b49c703f6c22068cace576c JAL-4107 Consistent use of isJS

JIRA issues

IssueDescriptionStatus
Unknown Issue TypeJAL-4107Could not obtain issue details from JIRA

Shared artifacts

Artifact File size
Jalview executables 48 MB
getdown build for website 52 MB

Error summary for Default Job

The job generated some errors, drill down into the full build log for more details.

Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2025/12/10 18:23:48:479 WARNING Starting without install4j classes
2025/12/10 18:23:48:993 WARNING Starting without install4j classes
    ^
  symbol:   class var
  location: class BaseTask<T,R>
  where T,R are type-variables:
    T extends BaseJob declared in class BaseTask
    R extends Object declared in class BaseTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:143: error: cannot find symbol
        var jobRef = webClient.submit(job.getInputSequences(), args, credentials);
        ^
  symbol:   class var
  location: class BaseTask<T,R>
  where T,R are type-variables:
    T extends BaseJob declared in class BaseTask
    R extends Object declared in class BaseTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:171: error: cannot find symbol
        var serverJob = job.getServerJob();
        ^
  symbol:   class var
  location: class BaseTask<T,R>
  where T,R are type-variables:
    T extends BaseJob declared in class BaseTask
    R extends Object declared in class BaseTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:193: error: cannot find symbol
    for (var job : jobs)
         ^
  symbol:   class var
  location: class BaseTask<T,R>
  where T,R are type-variables:
    T extends BaseJob declared in class BaseTask
    R extends Object declared in class BaseTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/BaseTask.java:309: error: cannot find symbol
    var statusName = status != null ? status.name() : "UNSET";
    ^
  symbol:   class var
  location: class BaseTask<T,R>
  where T,R are type-variables:
    T extends BaseJob declared in class BaseTask
    R extends Object declared in class BaseTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:63: error: cannot find symbol
    var seqInfo = SeqsetUtils.SeqCharacterHash(seq);
    ^
  symbol:   class var
  location: class SecStructPredPDBSearchTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:69: error: cannot find symbol
    var job = new SecStructPredJob(seq, delMap, seqInfo);
    ^
  symbol:   class var
  location: class SecStructPredPDBSearchTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:80: error: cannot find symbol
    var job = jobs.get(0);  // There should be exactly one job
    ^
  symbol:   class var
  location: class SecStructPredPDBSearchTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java:81: error: cannot find symbol
    var status = job.getStatus();
    ^
  symbol:   class var
  location: class SecStructPredPDBSearchTask
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java:40: error: cannot find symbol
    for (var listener : listeners)
         ^
  symbol:   class var
  location: class TaskEventSupport<T>
  where T is a type-variable:
    T extends Object declared in class TaskEventSupport
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java:46: error: cannot find symbol
    for (var listener : listeners)
         ^
  symbol:   class var
  location: class TaskEventSupport<T>
  where T is a type-variable:
    T extends Object declared in class TaskEventSupport
/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GPC656-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java:52: error: cannot find symbol
    for (var listener : listeners)
         ^
  symbol:   class var
  location: class TaskEventSupport<T>
  where T is a type-variable:
    T extends Object declared in class TaskEventSupport
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
100 errors
100 warnings

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':compileJava'.
> Compilation failed; see the compiler error output for details.

* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.

* Get more help at https://help.gradle.org

BUILD FAILED in 7s