JalviewJS build by Gradle with site dir and site tar file
Build: #182 was successful
Job: Default Job was successful
Build log
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| 12-Jan-2021 00:58:26 | J2S transpiling (549/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/io/gff/SequenceOntologyFactory.java |
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| 12-Jan-2021 00:58:26 | J2S transpiling (554/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/io/packed/ParsePackedSet.java |
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| 12-Jan-2021 00:58:26 | org.apache.log4j.Logger -> jalview.javascript.log4j.Logger |
| 12-Jan-2021 00:58:26 | org.apache.log4j.Logger -> jalview.javascript.log4j.Logger |
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| 12-Jan-2021 00:58:26 | org.apache.log4j.Logger -> jalview.javascript.log4j.Logger |
| 12-Jan-2021 00:58:26 | org.apache.log4j.Logger -> jalview.javascript.log4j.Logger |
| 12-Jan-2021 00:58:26 | J2S transpiling (559/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/io/vamsas/Dbref.java |
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| 12-Jan-2021 00:58:29 | native: ICStart |
| 12-Jan-2021 00:58:29 | native: ICStop |
| 12-Jan-2021 00:58:29 | native: ICLaunchURL |
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| 12-Jan-2021 00:58:29 | org.apache.log4j.Logger -> jalview.javascript.log4j.Logger |
| 12-Jan-2021 00:58:29 | org.apache.log4j.Logger -> jalview.javascript.log4j.Logger |
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| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ParseHtmlBodyAndLinksTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/PlatformTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/QuickSortTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/SetUtilsTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ShiftListTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/SparseCountTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/StringUtilsTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/UrlLinkTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/dialogrunner/DialogRunnerTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/matcher/ConditionTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/matcher/MatcherTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/OverviewDimensionsHideHiddenTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/OverviewDimensionsShowHiddenTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/ViewportRangesTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/styles/ViewStyleTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/workers/AlignCalcManagerTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/SequenceFetcherTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/EmblSourceTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/PfamFullTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/RfamFullTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/UniprotTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/gui/Jws2ParamView.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/rest/RestClientTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/sifts/SiftsClientTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/junit/extensions/PA.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/junit/extensions/PrivilegedAccessor.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/AtomTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/BondTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/PDBChainTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/PDBfileTest.java |
| 12-Jan-2021 00:58:34 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/ResidueTest.java |
| 12-Jan-2021 00:58:34 | J2S processed 1032 .java files, created 1060 .js files and 7 .html files, copied 5 resources |
| 12-Jan-2021 00:58:34 | J2S buildFinished 1032 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 |
| 12-Jan-2021 00:58:34 | J2S buildFinished nerror = 0 Tue Jan 12 00:58:34 GMT 2021 |
| 12-Jan-2021 00:58:34 | (Found 2357 warnings) Build done |
| 12-Jan-2021 00:58:34 | Invoking 'Gradle Project Builder' on '/jalview'. |
| 12-Jan-2021 00:58:36 | :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 1 mins 16.093 secs. |
| 12-Jan-2021 00:58:36 | :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:36 | |
| 12-Jan-2021 00:58:36 | > Task :jalviewjsCopyTransferSiteJs |
| 12-Jan-2021 00:58:36 | Caching disabled for task ':jalviewjsCopyTransferSiteJs' because: |
| 12-Jan-2021 00:58:36 | Build cache is disabled |
| 12-Jan-2021 00:58:36 | Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because: |
| 12-Jan-2021 00:58:36 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site has been removed. |
| 12-Jan-2021 00:58:36 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed. |
| 12-Jan-2021 00:58:36 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/jalview_bin_AppletParams.html has been removed. |
| 12-Jan-2021 00:58:36 | :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.349 secs. |
| 12-Jan-2021 00:58:36 | :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:37 | |
| 12-Jan-2021 00:58:37 | > Task :jalviewjsTransferUnzipLib |
| 12-Jan-2021 00:58:37 | Caching disabled for task ':jalviewjsTransferUnzipLib' because: |
| 12-Jan-2021 00:58:37 | Build cache is disabled |
| 12-Jan-2021 00:58:37 | Task ':jalviewjsTransferUnzipLib' is not up-to-date because: |
| 12-Jan-2021 00:58:37 | One or more additional actions for task ':jalviewjsTransferUnzipLib' have changed. |
| 12-Jan-2021 00:58:37 | :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.874 secs. |
| 12-Jan-2021 00:58:37 | :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:38 | |
| 12-Jan-2021 00:58:38 | > Task :jalviewjsTransferUnzipSwingJs |
| 12-Jan-2021 00:58:38 | Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because: |
| 12-Jan-2021 00:58:38 | Build cache is disabled |
| 12-Jan-2021 00:58:38 | Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because: |
| 12-Jan-2021 00:58:38 | One or more additional actions for task ':jalviewjsTransferUnzipSwingJs' have changed. |
| 12-Jan-2021 00:58:38 | :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 1.343 secs. |
| 12-Jan-2021 00:58:38 | :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:38 | |
| 12-Jan-2021 00:58:38 | > Task :jalviewjsTransferUnzipAllLibs |
| 12-Jan-2021 00:58:38 | Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions. |
| 12-Jan-2021 00:58:38 | :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 12-Jan-2021 00:58:38 | :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:40 | |
| 12-Jan-2021 00:58:40 | > Task :jalviewjsSyncAllLibs |
| 12-Jan-2021 00:58:40 | Caching disabled for task ':jalviewjsSyncAllLibs' because: |
| 12-Jan-2021 00:58:40 | Build cache is disabled |
| 12-Jan-2021 00:58:40 | Task ':jalviewjsSyncAllLibs' is not up-to-date because: |
| 12-Jan-2021 00:58:40 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Assets.js has changed. |
| 12-Jan-2021 00:58:40 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Async.js has changed. |
| 12-Jan-2021 00:58:40 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/AsyncColorChooser.js has changed. |
| 12-Jan-2021 00:58:40 | :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.596 secs. |
| 12-Jan-2021 00:58:40 | :setGitVals (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:40 | |
| 12-Jan-2021 00:58:40 | > Task :setGitVals |
| 12-Jan-2021 00:58:40 | Caching disabled for task ':setGitVals' because: |
| 12-Jan-2021 00:58:40 | Build cache is disabled |
| 12-Jan-2021 00:58:40 | Task ':setGitVals' is not up-to-date because: |
| 12-Jan-2021 00:58:40 | Task.upToDateWhen is false. |
| 12-Jan-2021 00:58:40 | Starting process 'command 'git''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: git rev-parse --short HEAD |
| 12-Jan-2021 00:58:40 | Successfully started process 'command 'git'' |
| 12-Jan-2021 00:58:40 | Starting process 'command 'git''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: git rev-parse --abbrev-ref HEAD |
| 12-Jan-2021 00:58:40 | Successfully started process 'command 'git'' |
| 12-Jan-2021 00:58:40 | :setGitVals (Thread[Execution worker for ':',5,main]) completed. Took 0.051 secs. |
| 12-Jan-2021 00:58:40 | :createBuildProperties (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:40 | |
| 12-Jan-2021 00:58:40 | > Task :createBuildProperties |
| 12-Jan-2021 00:58:40 | Caching disabled for task ':createBuildProperties' because: |
| 12-Jan-2021 00:58:40 | Build cache is disabled |
| 12-Jan-2021 00:58:40 | Task ':createBuildProperties' is not up-to-date because: |
| 12-Jan-2021 00:58:40 | Value of input property 'comment' has changed for task ':createBuildProperties' |
| 12-Jan-2021 00:58:40 | Value of input property 'properties' has changed for task ':createBuildProperties' |
| 12-Jan-2021 00:58:40 | :createBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.016 secs. |
| 12-Jan-2021 00:58:40 | :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:40 | |
| 12-Jan-2021 00:58:40 | > Task :jalviewjsSyncBuildProperties |
| 12-Jan-2021 00:58:40 | Caching disabled for task ':jalviewjsSyncBuildProperties' because: |
| 12-Jan-2021 00:58:40 | Build cache is disabled |
| 12-Jan-2021 00:58:40 | Task ':jalviewjsSyncBuildProperties' is not up-to-date because: |
| 12-Jan-2021 00:58:40 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed. |
| 12-Jan-2021 00:58:40 | :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.172 secs. |
| 12-Jan-2021 00:58:40 | :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:42 | |
| 12-Jan-2021 00:58:42 | > Task :jalviewjsBuildAllCores |
| 12-Jan-2021 00:58:42 | Caching disabled for task ':jalviewjsBuildAllCores' because: |
| 12-Jan-2021 00:58:42 | Build cache is disabled |
| 12-Jan-2021 00:58:42 | Task ':jalviewjsBuildAllCores' is not up-to-date because: |
| 12-Jan-2021 00:58:42 | One or more additional actions for task ':jalviewjsBuildAllCores' have changed. |
| 12-Jan-2021 00:58:42 | Creating core for stevesoft... |
| 12-Jan-2021 00:58:42 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js |
| 12-Jan-2021 00:58:42 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js |
| 12-Jan-2021 00:58:42 | |
| 12-Jan-2021 00:58:42 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js' |
| 12-Jan-2021 00:58:42 | |
| 12-Jan-2021 00:58:42 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js |
| 12-Jan-2021 00:58:42 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 12-Jan-2021 00:58:44 | -- |
| 12-Jan-2021 00:58:44 | Creating core for jvjmol... |
| 12-Jan-2021 00:58:44 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js |
| 12-Jan-2021 00:58:44 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.z.js |
| 12-Jan-2021 00:58:44 | |
| 12-Jan-2021 00:58:44 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.z.js' |
| 12-Jan-2021 00:58:44 | |
| 12-Jan-2021 00:58:44 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.z.js |
| 12-Jan-2021 00:58:44 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 12-Jan-2021 00:58:46 | -- |
| 12-Jan-2021 00:58:46 | Creating core for jalview... |
| 12-Jan-2021 00:58:46 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js |
| 12-Jan-2021 00:58:46 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js |
| 12-Jan-2021 00:58:46 | |
| 12-Jan-2021 00:58:46 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js' |
| 12-Jan-2021 00:58:46 | |
| 12-Jan-2021 00:58:46 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js |
| 12-Jan-2021 00:58:46 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 12-Jan-2021 00:58:47 | -- |
| 12-Jan-2021 00:58:47 | :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) completed. Took 7.119 secs. |
| 12-Jan-2021 00:58:47 | :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:47 | |
| 12-Jan-2021 00:58:47 | > Task :jalviewjsPublishCoreTemplates |
| 12-Jan-2021 00:58:47 | Caching disabled for task ':jalviewjsPublishCoreTemplates' because: |
| 12-Jan-2021 00:58:47 | Build cache is disabled |
| 12-Jan-2021 00:58:47 | Task ':jalviewjsPublishCoreTemplates' is not up-to-date because: |
| 12-Jan-2021 00:58:47 | One or more additional actions for task ':jalviewjsPublishCoreTemplates' have changed. |
| 12-Jan-2021 00:58:47 | :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) completed. Took 0.038 secs. |
| 12-Jan-2021 00:58:47 | :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:47 | |
| 12-Jan-2021 00:58:47 | > Task :jalviewjsSyncCore |
| 12-Jan-2021 00:58:47 | Caching disabled for task ':jalviewjsSyncCore' because: |
| 12-Jan-2021 00:58:47 | Build cache is disabled |
| 12-Jan-2021 00:58:47 | Task ':jalviewjsSyncCore' is not up-to-date because: |
| 12-Jan-2021 00:58:47 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed. |
| 12-Jan-2021 00:58:47 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/JalviewJS_jvjmol.html has been removed. |
| 12-Jan-2021 00:58:47 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/JalviewJS_stevesoft.html has been removed. |
| 12-Jan-2021 00:58:47 | :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) completed. Took 0.165 secs. |
| 12-Jan-2021 00:58:47 | :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:48 | |
| 12-Jan-2021 00:58:48 | > Task :jalviewjsSyncResources |
| 12-Jan-2021 00:58:48 | Caching disabled for task ':jalviewjsSyncResources' because: |
| 12-Jan-2021 00:58:48 | Build cache is disabled |
| 12-Jan-2021 00:58:48 | Task ':jalviewjsSyncResources' is not up-to-date because: |
| 12-Jan-2021 00:58:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed. |
| 12-Jan-2021 00:58:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed. |
| 12-Jan-2021 00:58:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/GeneticCodes.dat has been removed. |
| 12-Jan-2021 00:58:48 | :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) completed. Took 0.394 secs. |
| 12-Jan-2021 00:58:48 | :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:48 | |
| 12-Jan-2021 00:58:48 | > Task :jalviewjsSyncSiteResources |
| 12-Jan-2021 00:58:48 | Caching disabled for task ':jalviewjsSyncSiteResources' because: |
| 12-Jan-2021 00:58:48 | Build cache is disabled |
| 12-Jan-2021 00:58:48 | Task ':jalviewjsSyncSiteResources' is not up-to-date because: |
| 12-Jan-2021 00:58:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/___j2sflags.htm has changed. |
| 12-Jan-2021 00:58:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed. |
| 12-Jan-2021 00:58:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/_jalview_bin_JalviewJS_core.html has been removed. |
| 12-Jan-2021 00:58:48 | :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) completed. Took 0.753 secs. |
| 12-Jan-2021 00:58:48 | :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:48 | |
| 12-Jan-2021 00:58:48 | > Task :jalviewjsPrepareSite |
| 12-Jan-2021 00:58:48 | Skipping task ':jalviewjsPrepareSite' as it has no actions. |
| 12-Jan-2021 00:58:48 | :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 12-Jan-2021 00:58:48 | :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:48 | |
| 12-Jan-2021 00:58:48 | > Task :jalviewjsBuildSite |
| 12-Jan-2021 00:58:48 | Skipping task ':jalviewjsBuildSite' as it has no actions. |
| 12-Jan-2021 00:58:48 | :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 12-Jan-2021 00:58:48 | :jalviewjs (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:48 | |
| 12-Jan-2021 00:58:48 | > Task :jalviewjs |
| 12-Jan-2021 00:58:48 | Skipping task ':jalviewjs' as it has no actions. |
| 12-Jan-2021 00:58:48 | :jalviewjs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 12-Jan-2021 00:58:48 | :jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) started. |
| 12-Jan-2021 00:58:50 | |
| 12-Jan-2021 00:58:50 | > Task :jalviewjsSiteTar |
| 12-Jan-2021 00:58:50 | Caching disabled for task ':jalviewjsSiteTar' because: |
| 12-Jan-2021 00:58:50 | Build cache is disabled |
| 12-Jan-2021 00:58:50 | Task ':jalviewjsSiteTar' is not up-to-date because: |
| 12-Jan-2021 00:58:50 | Output property 'archiveFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/distributions/jalviewjs-site-TEST.tar.gz has been removed. |
| 12-Jan-2021 00:58:51 | :jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) completed. Took 2.577 secs. |
| 12-Jan-2021 00:58:51 | |
| 12-Jan-2021 00:58:51 | BUILD SUCCESSFUL in 2m 53s |
| 12-Jan-2021 00:58:51 | 24 actionable tasks: 24 executed |
| 12-Jan-2021 00:58:51 | VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/.gradle/vcs-1) removing files not accessed on or after Tue Jan 05 00:56:04 GMT 2021. |
| 12-Jan-2021 00:58:51 | VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/.gradle/vcs-1) cleaned up in 0.002 secs. |
| 12-Jan-2021 00:58:51 | Finished task 'JalviewJS build site and distributable tar' with result: Success |
| 12-Jan-2021 00:58:51 | Running post build plugin 'NCover Results Collector' |
| 12-Jan-2021 00:58:51 | Running post build plugin 'Artifact Copier' |
| 12-Jan-2021 00:58:51 | Publishing an artifact: JalviewJS site tar file |
| 12-Jan-2021 00:58:51 | Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 35.15 ms |
| 12-Jan-2021 00:58:51 | Publishing an artifact: JalviewJS site |
| 12-Jan-2021 00:58:53 | Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 1.272 s |
| 12-Jan-2021 00:58:53 | Running post build plugin 'Artifactory Release Management Staging' |
| 12-Jan-2021 00:58:53 | Running post build plugin 'Artifactory Build Info Copier' |
| 12-Jan-2021 00:58:53 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 12-Jan-2021 00:58:53 | Running post build plugin 'npm Cache Cleanup' |
| 12-Jan-2021 00:58:53 | Running post build plugin 'Clover Results Collector' |
| 12-Jan-2021 00:58:53 | Running post build plugin 'Docker Container Cleanup' |
| 12-Jan-2021 00:58:53 | Finalising the build... |
| 12-Jan-2021 00:58:53 | Stopping timer. |
| 12-Jan-2021 00:58:53 | Build JB-GJB0-JOB1-182 completed. |
| 12-Jan-2021 00:58:53 | Running on server: post build plugin 'NCover Results Collector' |
| 12-Jan-2021 00:58:53 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 12-Jan-2021 00:58:53 | Running on server: post build plugin 'Clover Delta Calculator' |
| 12-Jan-2021 00:58:53 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 12-Jan-2021 00:58:53 | All post build plugins have finished |
| 12-Jan-2021 00:58:53 | Generating build results summary... |
| 12-Jan-2021 00:58:53 | Saving build results to disk... |
| 12-Jan-2021 00:58:53 | Logging substituted variables... |
| 12-Jan-2021 00:58:53 | Indexing build results... |
| 12-Jan-2021 00:58:53 | Finished building JB-GJB0-JOB1-182. |