JalviewJS build by Gradle with site dir and site tar file
Build: #181 was successful
Job: Default Job was successful
Build log
The build generated 14,070 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log
| 14-Dec-2020 16:30:27 | J2S transpiling (813/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/jws2/jabaws2/Jws2Instance.java |
| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:27 | J2S transpiling (814/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java |
| 14-Dec-2020 16:30:27 | J2S transpiling (815/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/params/ArgumentI.java |
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| 14-Dec-2020 16:30:27 | J2S transpiling (823/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/params/WsParamSetI.java |
| 14-Dec-2020 16:30:27 | J2S transpiling (824/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/params/simple/BooleanOption.java |
| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
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| 14-Dec-2020 16:30:27 | J2S transpiling (827/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/params/simple/Parameter.java |
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| 14-Dec-2020 16:30:27 | J2S transpiling (829/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/AlignmentProcessor.java |
| 14-Dec-2020 16:30:27 | J2S transpiling (830/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/HttpResultSet.java |
| 14-Dec-2020 16:30:27 | J2S transpiling (831/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/InputType.java |
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| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray jalview.ws.rest.RestClient[] k=[Ljalview/ws/rest/RestClient; n=RestClient[] |
| 14-Dec-2020 16:30:27 | J2S transpiling (834/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/RestJob.java |
| 14-Dec-2020 16:30:27 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray jalview.datamodel.SequenceI[] k=[Ljalview/datamodel/SequenceI; n=SequenceI[] |
| 14-Dec-2020 16:30:27 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:27 | J2S transpiling (835/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/RestJobThread.java |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.ws.rest.RestJob[] k=[Ljalview/ws/rest/RestJob; n=RestJob[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.ws.rest.RestJob[] k=[Ljalview/ws/rest/RestJob; n=RestJob[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[][] k=[[I n=int[][] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.SequenceI[][] k=[[Ljalview/datamodel/SequenceI; n=SequenceI[][] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.AlignmentOrder[] k=[Ljalview/datamodel/AlignmentOrder; n=AlignmentOrder[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.AlignmentAnnotation[][] k=[[Ljalview/datamodel/AlignmentAnnotation; n=AlignmentAnnotation[][] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.SequenceGroup[][] k=[[Ljalview/datamodel/SequenceGroup; n=SequenceGroup[][] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.SequenceGroup[] k=[Ljalview/datamodel/SequenceGroup; n=SequenceGroup[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.AlignmentOrder[] k=[Ljalview/datamodel/AlignmentOrder; n=AlignmentOrder[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.Annotation[] k=[Ljalview/datamodel/Annotation; n=Annotation[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.Annotation[] k=[Ljalview/datamodel/Annotation; n=Annotation[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.SequenceI[][] k=[[Ljalview/datamodel/SequenceI; n=SequenceI[][] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.SequenceI[] k=[Ljalview/datamodel/SequenceI; n=SequenceI[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray char[] k=[C n=char[] |
| 14-Dec-2020 16:30:28 | J2S transpiling (836/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/RestServiceDescription.java |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray public final class Class#RAW |
| 14-Dec-2020 16:30:28 | extends java.lang.Object |
| 14-Dec-2020 16:30:28 | implements : java.io.Serializable, java.lang.reflect.GenericDeclaration, java.lang.reflect.Type, java.lang.reflect.AnnotatedElementNULL FIELDS |
| 14-Dec-2020 16:30:28 | /* methods */ |
| 14-Dec-2020 16:30:28 | public transient Constructor#RAW getConstructor(Class#RAW[]) throws java.lang.NoSuchMethodException, java.lang.SecurityException |
| 14-Dec-2020 16:30:28 | |
| 14-Dec-2020 16:30:28 | k=Ljava/lang/Class<>; n=Class |
| 14-Dec-2020 16:30:28 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:28 | extends NULL TYPE |
| 14-Dec-2020 16:30:28 | /* methods */ |
| 14-Dec-2020 16:30:28 | public void <init>() |
| 14-Dec-2020 16:30:28 | [unresolved] protected native java.lang.Object clone() throws Unresolved type java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:28 | public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:28 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:28 | public final native Class<?> getClass() |
| 14-Dec-2020 16:30:28 | public native int hashCode() |
| 14-Dec-2020 16:30:28 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:28 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:28 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:28 | public java.lang.String toString() |
| 14-Dec-2020 16:30:28 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:28 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:28 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:28 | |
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| 14-Dec-2020 16:30:28 | k=Ljava/lang/Object; n=Object |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[][] k=[[Ljava/lang/String; n=String[][] |
| 14-Dec-2020 16:30:28 | J2S transpiling (837/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/rest/params/Alignment.java |
| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[][] k=[[I n=int[][] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray Class#RAW[] k=[Ljava/lang/Class<>; n=Class[] |
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| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.datamodel.SequenceI[] k=[Ljalview/datamodel/SequenceI; n=SequenceI[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray public final class Class<?> |
| 14-Dec-2020 16:30:28 | extends NULL TYPENULL SUPERINTERFACESNULL FIELDSNULL METHODS |
| 14-Dec-2020 16:30:28 | |
| 14-Dec-2020 16:30:28 | k=Ljava/lang/Class<Ljava/lang/Class;{0}*>; n=Class<?> |
| 14-Dec-2020 16:30:28 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:28 | extends NULL TYPE |
| 14-Dec-2020 16:30:28 | /* methods */ |
| 14-Dec-2020 16:30:28 | public void <init>() |
| 14-Dec-2020 16:30:28 | [unresolved] protected native java.lang.Object clone() throws Unresolved type java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:28 | public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:28 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:28 | public final native Class<?> getClass() |
| 14-Dec-2020 16:30:28 | [unresolved] public native int hashCode() |
| 14-Dec-2020 16:30:28 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:28 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:28 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:28 | [unresolved] public Unresolved type java.lang.String toString() |
| 14-Dec-2020 16:30:28 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:28 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:28 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:28 | |
| 14-Dec-2020 16:30:28 | |
| 14-Dec-2020 16:30:28 | k=Ljava/lang/Object; n=Object |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.ws.seqfetcher.DbSourceProxy[] k=[Ljalview/ws/seqfetcher/DbSourceProxy; n=DbSourceProxy[] |
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| 14-Dec-2020 16:30:28 | J2S transpiling (848/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/jalview/ws/sifts/SiftsClient.java |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.Integer[] k=[Ljava/lang/Integer; n=Integer[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray java.lang.Integer[] k=[Ljava/lang/Integer; n=Integer[] |
| 14-Dec-2020 16:30:28 | J2S.clazzArray jalview.ws.sifts.SiftsClient.SiftsEntitySortPojo[] k=[Ljalview/ws/sifts/SiftsClient$SiftsEntitySortPojo; n=SiftsEntitySortPojo[] |
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| 14-Dec-2020 16:30:29 | J2S.clazzArray byte[] k=[B n=byte[] |
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| 14-Dec-2020 16:30:29 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:29 | extends NULL TYPE |
| 14-Dec-2020 16:30:29 | /* methods */ |
| 14-Dec-2020 16:30:29 | public void <init>() |
| 14-Dec-2020 16:30:29 | [unresolved] protected native java.lang.Object clone() throws Unresolved type java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:29 | [unresolved] public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:29 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:29 | [unresolved] public final native Unresolved type java.lang.Class<?> getClass() |
| 14-Dec-2020 16:30:29 | [unresolved] public native int hashCode() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:29 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:29 | [unresolved] public Unresolved type java.lang.String toString() |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | |
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| 14-Dec-2020 16:30:29 | k=Ljava/lang/Object; n=Object |
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| 14-Dec-2020 16:30:29 | J2S transpiling (945/1032) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/src/org/jibble/epsgraphics/EpsException.java |
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| 14-Dec-2020 16:30:29 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray float[] k=[F n=float[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray int[] k=[I n=int[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray double[] k=[D n=double[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
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| 14-Dec-2020 16:30:29 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray java.lang.String[] k=[Ljava/lang/String; n=String[] |
| 14-Dec-2020 16:30:29 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:29 | extends NULL TYPE |
| 14-Dec-2020 16:30:29 | /* methods */ |
| 14-Dec-2020 16:30:29 | public void <init>() |
| 14-Dec-2020 16:30:29 | protected native java.lang.Object clone() throws java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:29 | public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:29 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:29 | public final native Class<?> getClass() |
| 14-Dec-2020 16:30:29 | public native int hashCode() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:29 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:29 | public java.lang.String toString() |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | |
| 14-Dec-2020 16:30:29 | |
| 14-Dec-2020 16:30:29 | k=Ljava/lang/Object; n=Object |
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| 14-Dec-2020 16:30:29 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:29 | extends NULL TYPE |
| 14-Dec-2020 16:30:29 | /* methods */ |
| 14-Dec-2020 16:30:29 | public void <init>() |
| 14-Dec-2020 16:30:29 | [unresolved] protected native java.lang.Object clone() throws Unresolved type java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:29 | public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:29 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:29 | [unresolved] public final native Unresolved type java.lang.Class<?> getClass() |
| 14-Dec-2020 16:30:29 | [unresolved] public native int hashCode() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:29 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:29 | public java.lang.String toString() |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | |
| 14-Dec-2020 16:30:29 | |
| 14-Dec-2020 16:30:29 | k=Ljava/lang/Object; n=Object |
| 14-Dec-2020 16:30:29 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:29 | extends NULL TYPE |
| 14-Dec-2020 16:30:29 | /* methods */ |
| 14-Dec-2020 16:30:29 | public void <init>() |
| 14-Dec-2020 16:30:29 | [unresolved] protected native java.lang.Object clone() throws Unresolved type java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:29 | public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:29 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:29 | [unresolved] public final native Unresolved type java.lang.Class<?> getClass() |
| 14-Dec-2020 16:30:29 | [unresolved] public native int hashCode() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:29 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:29 | public java.lang.String toString() |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | |
| 14-Dec-2020 16:30:29 | |
| 14-Dec-2020 16:30:29 | k=Ljava/lang/Object; n=Object |
| 14-Dec-2020 16:30:29 | J2S.clazzArray public class java.lang.Object |
| 14-Dec-2020 16:30:29 | extends NULL TYPE |
| 14-Dec-2020 16:30:29 | /* methods */ |
| 14-Dec-2020 16:30:29 | public void <init>() |
| 14-Dec-2020 16:30:29 | [unresolved] protected native java.lang.Object clone() throws Unresolved type java.lang.CloneNotSupportedException |
| 14-Dec-2020 16:30:29 | public boolean equals(java.lang.Object) |
| 14-Dec-2020 16:30:29 | [unresolved] protected void finalize() throws Unresolved type java.lang.Throwable |
| 14-Dec-2020 16:30:29 | [unresolved] public final native Unresolved type java.lang.Class<?> getClass() |
| 14-Dec-2020 16:30:29 | [unresolved] public native int hashCode() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notify() |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void notifyAll() |
| 14-Dec-2020 16:30:29 | [unresolved] private static native void registerNatives() |
| 14-Dec-2020 16:30:29 | public java.lang.String toString() |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait() throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final native void wait(long) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | [unresolved] public final void wait(long, int) throws Unresolved type java.lang.InterruptedException |
| 14-Dec-2020 16:30:29 | |
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| 14-Dec-2020 16:30:29 | k=Ljava/lang/Object; n=Object |
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| 14-Dec-2020 16:30:30 | J2S.clazzArray char[] k=[C n=char[] |
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| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/schemes/ResidueColourSchemeTest.java |
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| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/schemes/UserColourSchemeTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/structure/AtomSpecTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/structure/Mapping.java |
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| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/structure/StructureSelectionManagerTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/structures/models/AAStructureBindingModelTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/AppletUrlProviderFactoryTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/CustomUrlProviderTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/DesktopUrlProviderFactoryTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/IdentifiersUrlProviderTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/UrlLinkDisplayTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/UrlLinkTableModelTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/urls/UrlProviderTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ArrayUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/CaseInsensitiveStringTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ColorUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ComparisonTest.java |
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| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/DnaUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/FormatTest.java |
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| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/MapListTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/MappingUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/MathUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/MessageManagerTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ParseHtmlBodyAndLinksTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/PlatformTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/QuickSortTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/SetUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/ShiftListTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/SparseCountTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/StringUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/UrlLinkTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/dialogrunner/DialogRunnerTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/matcher/ConditionTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/util/matcher/MatcherTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/OverviewDimensionsHideHiddenTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/OverviewDimensionsShowHiddenTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/ViewportRangesTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/viewmodel/styles/ViewStyleTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/workers/AlignCalcManagerTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/SequenceFetcherTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/EmblSourceTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/PfamFullTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/RfamFullTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/UniprotTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/gui/Jws2ParamView.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/rest/RestClientTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/sifts/SiftsClientTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/junit/extensions/PA.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/junit/extensions/PrivilegedAccessor.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/AtomTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/BondTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/PDBChainTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/PDBfileTest.java |
| 14-Dec-2020 16:30:30 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/test/mc_view/ResidueTest.java |
| 14-Dec-2020 16:30:30 | J2S processed 1032 .java files, created 1060 .js files and 7 .html files, copied 5 resources |
| 14-Dec-2020 16:30:30 | J2S buildFinished 1032 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 |
| 14-Dec-2020 16:30:30 | J2S buildFinished nerror = 0 Mon Dec 14 16:30:30 GMT 2020 |
| 14-Dec-2020 16:30:30 | (Found 2357 warnings) Build done |
| 14-Dec-2020 16:30:30 | Invoking 'Gradle Project Builder' on '/jalview'. |
| 14-Dec-2020 16:30:31 | :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 49.29 secs. |
| 14-Dec-2020 16:30:31 | :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:32 | |
| 14-Dec-2020 16:30:32 | > Task :jalviewjsCopyTransferSiteJs |
| 14-Dec-2020 16:30:32 | Caching disabled for task ':jalviewjsCopyTransferSiteJs' because: |
| 14-Dec-2020 16:30:32 | Build cache is disabled |
| 14-Dec-2020 16:30:32 | Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because: |
| 14-Dec-2020 16:30:32 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site has been removed. |
| 14-Dec-2020 16:30:32 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed. |
| 14-Dec-2020 16:30:32 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/jalview_bin_AppletParams.html has been removed. |
| 14-Dec-2020 16:30:32 | :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.237 secs. |
| 14-Dec-2020 16:30:32 | :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:32 | |
| 14-Dec-2020 16:30:32 | > Task :jalviewjsTransferUnzipLib |
| 14-Dec-2020 16:30:32 | Caching disabled for task ':jalviewjsTransferUnzipLib' because: |
| 14-Dec-2020 16:30:32 | Build cache is disabled |
| 14-Dec-2020 16:30:32 | Task ':jalviewjsTransferUnzipLib' is not up-to-date because: |
| 14-Dec-2020 16:30:32 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_lib has been removed. |
| 14-Dec-2020 16:30:32 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_VARNA_applet.html has been removed. |
| 14-Dec-2020 16:30:32 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed. |
| 14-Dec-2020 16:30:32 | :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.491 secs. |
| 14-Dec-2020 16:30:32 | :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:33 | |
| 14-Dec-2020 16:30:33 | > Task :jalviewjsTransferUnzipSwingJs |
| 14-Dec-2020 16:30:33 | Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because: |
| 14-Dec-2020 16:30:33 | Build cache is disabled |
| 14-Dec-2020 16:30:33 | Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because: |
| 14-Dec-2020 16:30:33 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_swingjs has been removed. |
| 14-Dec-2020 16:30:33 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_swingjs/README.txt has been removed. |
| 14-Dec-2020 16:30:33 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed. |
| 14-Dec-2020 16:30:33 | :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 0.916 secs. |
| 14-Dec-2020 16:30:33 | :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:33 | |
| 14-Dec-2020 16:30:33 | > Task :jalviewjsTransferUnzipAllLibs |
| 14-Dec-2020 16:30:33 | Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions. |
| 14-Dec-2020 16:30:33 | :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 14-Dec-2020 16:30:33 | :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:34 | |
| 14-Dec-2020 16:30:34 | > Task :jalviewjsSyncAllLibs |
| 14-Dec-2020 16:30:34 | Caching disabled for task ':jalviewjsSyncAllLibs' because: |
| 14-Dec-2020 16:30:34 | Build cache is disabled |
| 14-Dec-2020 16:30:34 | Task ':jalviewjsSyncAllLibs' is not up-to-date because: |
| 14-Dec-2020 16:30:34 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Assets.js has changed. |
| 14-Dec-2020 16:30:34 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Async.js has changed. |
| 14-Dec-2020 16:30:34 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/AsyncColorChooser.js has changed. |
| 14-Dec-2020 16:30:34 | :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.354 secs. |
| 14-Dec-2020 16:30:34 | :setGitVals (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:35 | |
| 14-Dec-2020 16:30:35 | > Task :setGitVals |
| 14-Dec-2020 16:30:35 | Caching disabled for task ':setGitVals' because: |
| 14-Dec-2020 16:30:35 | Build cache is disabled |
| 14-Dec-2020 16:30:35 | Task ':setGitVals' is not up-to-date because: |
| 14-Dec-2020 16:30:35 | Task.upToDateWhen is false. |
| 14-Dec-2020 16:30:35 | Starting process 'command 'git''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: git rev-parse --short HEAD |
| 14-Dec-2020 16:30:35 | Successfully started process 'command 'git'' |
| 14-Dec-2020 16:30:35 | Starting process 'command 'git''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: git rev-parse --abbrev-ref HEAD |
| 14-Dec-2020 16:30:35 | Successfully started process 'command 'git'' |
| 14-Dec-2020 16:30:35 | :setGitVals (Thread[Execution worker for ':',5,main]) completed. Took 0.05 secs. |
| 14-Dec-2020 16:30:35 | :createBuildProperties (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:35 | |
| 14-Dec-2020 16:30:35 | > Task :createBuildProperties |
| 14-Dec-2020 16:30:35 | Caching disabled for task ':createBuildProperties' because: |
| 14-Dec-2020 16:30:35 | Build cache is disabled |
| 14-Dec-2020 16:30:35 | Task ':createBuildProperties' is not up-to-date because: |
| 14-Dec-2020 16:30:35 | Value of input property 'comment' has changed for task ':createBuildProperties' |
| 14-Dec-2020 16:30:35 | Value of input property 'properties' has changed for task ':createBuildProperties' |
| 14-Dec-2020 16:30:35 | :createBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.017 secs. |
| 14-Dec-2020 16:30:35 | :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:35 | |
| 14-Dec-2020 16:30:35 | > Task :jalviewjsSyncBuildProperties |
| 14-Dec-2020 16:30:35 | Caching disabled for task ':jalviewjsSyncBuildProperties' because: |
| 14-Dec-2020 16:30:35 | Build cache is disabled |
| 14-Dec-2020 16:30:35 | Task ':jalviewjsSyncBuildProperties' is not up-to-date because: |
| 14-Dec-2020 16:30:35 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed. |
| 14-Dec-2020 16:30:35 | :jalviewjsSyncBuildProperties (Thread[Execution worker for ':',5,main]) completed. Took 0.151 secs. |
| 14-Dec-2020 16:30:35 | :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:37 | |
| 14-Dec-2020 16:30:37 | > Task :jalviewjsBuildAllCores |
| 14-Dec-2020 16:30:37 | Caching disabled for task ':jalviewjsBuildAllCores' because: |
| 14-Dec-2020 16:30:37 | Build cache is disabled |
| 14-Dec-2020 16:30:37 | Task ':jalviewjsBuildAllCores' is not up-to-date because: |
| 14-Dec-2020 16:30:37 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js has been removed. |
| 14-Dec-2020 16:30:37 | Output property '$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js has been removed. |
| 14-Dec-2020 16:30:37 | Output property '$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js has been removed. |
| 14-Dec-2020 16:30:37 | Creating core for stevesoft... |
| 14-Dec-2020 16:30:37 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js |
| 14-Dec-2020 16:30:37 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js |
| 14-Dec-2020 16:30:37 | |
| 14-Dec-2020 16:30:37 | Running '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js' |
| 14-Dec-2020 16:30:37 | |
| 14-Dec-2020 16:30:37 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js |
| 14-Dec-2020 16:30:37 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java'' |
| 14-Dec-2020 16:30:38 | -- |
| 14-Dec-2020 16:30:38 | Creating core for jvjmol... |
| 14-Dec-2020 16:30:38 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js |
| 14-Dec-2020 16:30:38 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.z.js |
| 14-Dec-2020 16:30:38 | |
| 14-Dec-2020 16:30:38 | Running '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.z.js' |
| 14-Dec-2020 16:30:38 | |
| 14-Dec-2020 16:30:38 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jvjmol.z.js |
| 14-Dec-2020 16:30:38 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java'' |
| 14-Dec-2020 16:30:41 | -- |
| 14-Dec-2020 16:30:41 | Creating core for jalview... |
| 14-Dec-2020 16:30:41 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js |
| 14-Dec-2020 16:30:41 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js |
| 14-Dec-2020 16:30:41 | |
| 14-Dec-2020 16:30:41 | Running '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js' |
| 14-Dec-2020 16:30:41 | |
| 14-Dec-2020 16:30:41 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js |
| 14-Dec-2020 16:30:41 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/OpenJDK11/jdk-11.0.5+10/bin/java'' |
| 14-Dec-2020 16:30:42 | -- |
| 14-Dec-2020 16:30:42 | :jalviewjsBuildAllCores (Thread[Execution worker for ':',5,main]) completed. Took 7.481 secs. |
| 14-Dec-2020 16:30:42 | :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:42 | |
| 14-Dec-2020 16:30:42 | > Task :jalviewjsPublishCoreTemplates |
| 14-Dec-2020 16:30:42 | Caching disabled for task ':jalviewjsPublishCoreTemplates' because: |
| 14-Dec-2020 16:30:42 | Build cache is disabled |
| 14-Dec-2020 16:30:42 | Task ':jalviewjsPublishCoreTemplates' is not up-to-date because: |
| 14-Dec-2020 16:30:42 | Output property '$1$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_stevesoft.html has been removed. |
| 14-Dec-2020 16:30:42 | Output property '$1$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jvjmol.html has been removed. |
| 14-Dec-2020 16:30:42 | Output property '$1$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jalview.html has been removed. |
| 14-Dec-2020 16:30:42 | :jalviewjsPublishCoreTemplates (Thread[Execution worker for ':',5,main]) completed. Took 0.018 secs. |
| 14-Dec-2020 16:30:42 | :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:42 | |
| 14-Dec-2020 16:30:42 | > Task :jalviewjsSyncCore |
| 14-Dec-2020 16:30:42 | Caching disabled for task ':jalviewjsSyncCore' because: |
| 14-Dec-2020 16:30:42 | Build cache is disabled |
| 14-Dec-2020 16:30:42 | Task ':jalviewjsSyncCore' is not up-to-date because: |
| 14-Dec-2020 16:30:42 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed. |
| 14-Dec-2020 16:30:42 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/JalviewJS_jvjmol.html has been removed. |
| 14-Dec-2020 16:30:42 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/JalviewJS_stevesoft.html has been removed. |
| 14-Dec-2020 16:30:42 | :jalviewjsSyncCore (Thread[Execution worker for ':',5,main]) completed. Took 0.168 secs. |
| 14-Dec-2020 16:30:42 | :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:43 | |
| 14-Dec-2020 16:30:43 | > Task :jalviewjsSyncResources |
| 14-Dec-2020 16:30:43 | Caching disabled for task ':jalviewjsSyncResources' because: |
| 14-Dec-2020 16:30:43 | Build cache is disabled |
| 14-Dec-2020 16:30:43 | Task ':jalviewjsSyncResources' is not up-to-date because: |
| 14-Dec-2020 16:30:43 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed. |
| 14-Dec-2020 16:30:43 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed. |
| 14-Dec-2020 16:30:43 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/swingjs/j2s/GeneticCodes.dat has been removed. |
| 14-Dec-2020 16:30:43 | :jalviewjsSyncResources (Thread[Execution worker for ':',5,main]) completed. Took 0.292 secs. |
| 14-Dec-2020 16:30:43 | :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:43 | |
| 14-Dec-2020 16:30:43 | > Task :jalviewjsSyncSiteResources |
| 14-Dec-2020 16:30:43 | Caching disabled for task ':jalviewjsSyncSiteResources' because: |
| 14-Dec-2020 16:30:43 | Build cache is disabled |
| 14-Dec-2020 16:30:43 | Task ':jalviewjsSyncSiteResources' is not up-to-date because: |
| 14-Dec-2020 16:30:43 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/___j2sflags.htm has changed. |
| 14-Dec-2020 16:30:43 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed. |
| 14-Dec-2020 16:30:43 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/jalviewjs/site/_jalview_bin_JalviewJS_core.html has been removed. |
| 14-Dec-2020 16:30:43 | :jalviewjsSyncSiteResources (Thread[Execution worker for ':',5,main]) completed. Took 0.45 secs. |
| 14-Dec-2020 16:30:43 | :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:43 | |
| 14-Dec-2020 16:30:43 | > Task :jalviewjsPrepareSite |
| 14-Dec-2020 16:30:43 | Skipping task ':jalviewjsPrepareSite' as it has no actions. |
| 14-Dec-2020 16:30:43 | :jalviewjsPrepareSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 14-Dec-2020 16:30:43 | :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:43 | |
| 14-Dec-2020 16:30:43 | > Task :jalviewjsBuildSite |
| 14-Dec-2020 16:30:43 | Skipping task ':jalviewjsBuildSite' as it has no actions. |
| 14-Dec-2020 16:30:43 | :jalviewjsBuildSite (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 14-Dec-2020 16:30:43 | :jalviewjs (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:43 | |
| 14-Dec-2020 16:30:43 | > Task :jalviewjs |
| 14-Dec-2020 16:30:43 | Skipping task ':jalviewjs' as it has no actions. |
| 14-Dec-2020 16:30:43 | :jalviewjs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 14-Dec-2020 16:30:43 | :jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) started. |
| 14-Dec-2020 16:30:45 | |
| 14-Dec-2020 16:30:45 | > Task :jalviewjsSiteTar |
| 14-Dec-2020 16:30:45 | Caching disabled for task ':jalviewjsSiteTar' because: |
| 14-Dec-2020 16:30:45 | Build cache is disabled |
| 14-Dec-2020 16:30:45 | Task ':jalviewjsSiteTar' is not up-to-date because: |
| 14-Dec-2020 16:30:45 | Output property 'archiveFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/build/distributions/jalviewjs-site-TEST.tar.gz has been removed. |
| 14-Dec-2020 16:30:45 | :jalviewjsSiteTar (Thread[Execution worker for ':',5,main]) completed. Took 2.441 secs. |
| 14-Dec-2020 16:30:45 | |
| 14-Dec-2020 16:30:45 | BUILD SUCCESSFUL in 1m 51s |
| 14-Dec-2020 16:30:45 | 23 actionable tasks: 22 executed, 1 up-to-date |
| 14-Dec-2020 16:30:45 | VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/.gradle/vcs-1) removing files not accessed on or after Mon Dec 07 16:28:55 GMT 2020. |
| 14-Dec-2020 16:30:45 | VCS Checkout Cache (/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJB0-JOB1/.gradle/vcs-1) cleaned up in 0.0 secs. |
| 14-Dec-2020 16:30:46 | Finished task 'JalviewJS build site and distributable tar' with result: Success |
| 14-Dec-2020 16:30:46 | Running post build plugin 'NCover Results Collector' |
| 14-Dec-2020 16:30:46 | Running post build plugin 'Artifact Copier' |
| 14-Dec-2020 16:30:46 | Publishing an artifact: JalviewJS site tar file |
| 14-Dec-2020 16:30:46 | Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 27.67 ms |
| 14-Dec-2020 16:30:46 | Publishing an artifact: JalviewJS site |
| 14-Dec-2020 16:30:47 | Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 1.211 s |
| 14-Dec-2020 16:30:47 | Running post build plugin 'Artifactory Release Management Staging' |
| 14-Dec-2020 16:30:47 | Running post build plugin 'Artifactory Build Info Copier' |
| 14-Dec-2020 16:30:47 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 14-Dec-2020 16:30:47 | Running post build plugin 'npm Cache Cleanup' |
| 14-Dec-2020 16:30:47 | Running post build plugin 'Clover Results Collector' |
| 14-Dec-2020 16:30:47 | Running post build plugin 'Docker Container Cleanup' |
| 14-Dec-2020 16:30:47 | Finalising the build... |
| 14-Dec-2020 16:30:47 | Stopping timer. |
| 14-Dec-2020 16:30:47 | Build JB-GJB0-JOB1-181 completed. |
| 14-Dec-2020 16:30:47 | Running on server: post build plugin 'NCover Results Collector' |
| 14-Dec-2020 16:30:47 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 14-Dec-2020 16:30:47 | Running on server: post build plugin 'Clover Delta Calculator' |
| 14-Dec-2020 16:30:47 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 14-Dec-2020 16:30:47 | All post build plugins have finished |
| 14-Dec-2020 16:30:47 | Generating build results summary... |
| 14-Dec-2020 16:30:47 | Saving build results to disk... |
| 14-Dec-2020 16:30:47 | Logging substituted variables... |
| 14-Dec-2020 16:30:47 | Indexing build results... |
| 14-Dec-2020 16:30:47 | Finished building JB-GJB0-JOB1-181. |