ARCHIVED !!!! test using latest 2022 eclipse for jalview-js
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| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/junit/extensions/PA.java |
| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/junit/extensions/PrivilegedAccessor.java |
| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/mc_view/AtomTest.java |
| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/mc_view/BondTest.java |
| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/mc_view/PDBChainTest.java |
| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/mc_view/PDBfileTest.java |
| 09-Jun-2022 10:10:58 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/test/mc_view/ResidueTest.java |
| 09-Jun-2022 10:10:58 | J2S processed 1036 .java files, created 1066 .js files and 6 .html files, copied 5 resources |
| 09-Jun-2022 10:10:58 | J2S buildFinished 1036 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1 |
| 09-Jun-2022 10:10:58 | J2S buildFinished nerror = 0 Thu Jun 09 10:10:58 BST 2022 |
| 09-Jun-2022 10:10:58 | (Found 4 errors + 2329 warnings) Build done |
| 09-Jun-2022 10:10:58 | Invoking 'Gradle Project Builder' on '/jalview'. |
| 09-Jun-2022 10:11:00 | :jalviewjsTranspile (Thread[included builds,5,main]) completed. Took 1 mins 8.153 secs. |
| 09-Jun-2022 10:11:00 | :jalviewjsCopyTransferSiteJs (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:00 | |
| 09-Jun-2022 10:11:00 | > Task :jalviewjsCopyTransferSiteJs |
| 09-Jun-2022 10:11:00 | Caching disabled for task ':jalviewjsCopyTransferSiteJs' because: |
| 09-Jun-2022 10:11:00 | Build cache is disabled |
| 09-Jun-2022 10:11:00 | Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because: |
| 09-Jun-2022 10:11:00 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site has been removed. |
| 09-Jun-2022 10:11:00 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed. |
| 09-Jun-2022 10:11:00 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/jalview_bin_Jalview.html has been removed. |
| 09-Jun-2022 10:11:00 | :jalviewjsCopyTransferSiteJs (Thread[included builds,5,main]) completed. Took 0.241 secs. |
| 09-Jun-2022 10:11:00 | :jalviewjsTransferUnzipLib (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:01 | |
| 09-Jun-2022 10:11:01 | > Task :jalviewjsTransferUnzipLib |
| 09-Jun-2022 10:11:01 | Caching disabled for task ':jalviewjsTransferUnzipLib' because: |
| 09-Jun-2022 10:11:01 | Build cache is disabled |
| 09-Jun-2022 10:11:01 | Task ':jalviewjsTransferUnzipLib' is not up-to-date because: |
| 09-Jun-2022 10:11:01 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_lib has been removed. |
| 09-Jun-2022 10:11:01 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed. |
| 09-Jun-2022 10:11:01 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html has been removed. |
| 09-Jun-2022 10:11:01 | :jalviewjsTransferUnzipLib (Thread[included builds,5,main]) completed. Took 0.562 secs. |
| 09-Jun-2022 10:11:01 | :jalviewjsTransferUnzipSwingJs (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:02 | |
| 09-Jun-2022 10:11:02 | > Task :jalviewjsTransferUnzipSwingJs |
| 09-Jun-2022 10:11:02 | Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because: |
| 09-Jun-2022 10:11:02 | Build cache is disabled |
| 09-Jun-2022 10:11:02 | Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because: |
| 09-Jun-2022 10:11:02 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_swingjs has been removed. |
| 09-Jun-2022 10:11:02 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed. |
| 09-Jun-2022 10:11:02 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_swingjs/debug.log has been removed. |
| 09-Jun-2022 10:11:02 | :jalviewjsTransferUnzipSwingJs (Thread[included builds,5,main]) completed. Took 1.104 secs. |
| 09-Jun-2022 10:11:02 | :jalviewjsTransferUnzipAllLibs (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:02 | |
| 09-Jun-2022 10:11:02 | > Task :jalviewjsTransferUnzipAllLibs |
| 09-Jun-2022 10:11:02 | Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions. |
| 09-Jun-2022 10:11:02 | :jalviewjsTransferUnzipAllLibs (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:02 | :jalviewjsSyncAllLibs (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:03 | |
| 09-Jun-2022 10:11:03 | > Task :jalviewjsSyncAllLibs |
| 09-Jun-2022 10:11:03 | Caching disabled for task ':jalviewjsSyncAllLibs' because: |
| 09-Jun-2022 10:11:03 | Build cache is disabled |
| 09-Jun-2022 10:11:03 | Task ':jalviewjsSyncAllLibs' is not up-to-date because: |
| 09-Jun-2022 10:11:03 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CDL.js has changed. |
| 09-Jun-2022 10:11:03 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/Cookie.js has changed. |
| 09-Jun-2022 10:11:03 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/org/json/CookieList.js has changed. |
| 09-Jun-2022 10:11:03 | :jalviewjsSyncAllLibs (Thread[included builds,5,main]) completed. Took 1.415 secs. |
| 09-Jun-2022 10:11:03 | :copyResources (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:03 | |
| 09-Jun-2022 10:11:03 | > Task :copyResources |
| 09-Jun-2022 10:11:03 | Caching disabled for task ':copyResources' because: |
| 09-Jun-2022 10:11:03 | Build cache is disabled |
| 09-Jun-2022 10:11:03 | Task ':copyResources' is not up-to-date because: |
| 09-Jun-2022 10:11:03 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/resources/resources_build has been removed. |
| 09-Jun-2022 10:11:03 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/resources/resources_build/AmbiguityCodes.dat has been removed. |
| 09-Jun-2022 10:11:03 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/resources/resources_build/authors.props has been removed. |
| 09-Jun-2022 10:11:03 | :copyResources (Thread[included builds,5,main]) completed. Took 0.051 secs. |
| 09-Jun-2022 10:11:03 | :createBuildProperties (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:03 | |
| 09-Jun-2022 10:11:03 | > Task :createBuildProperties |
| 09-Jun-2022 10:11:03 | Caching disabled for task ':createBuildProperties' because: |
| 09-Jun-2022 10:11:03 | Build cache is disabled |
| 09-Jun-2022 10:11:03 | Task ':createBuildProperties' is not up-to-date because: |
| 09-Jun-2022 10:11:03 | Value of input property 'comment' has changed for task ':createBuildProperties' |
| 09-Jun-2022 10:11:03 | Value of input property 'properties' has changed for task ':createBuildProperties' |
| 09-Jun-2022 10:11:03 | :createBuildProperties (Thread[included builds,5,main]) completed. Took 0.004 secs. |
| 09-Jun-2022 10:11:03 | :jalviewjsSyncBuildProperties (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:03 | |
| 09-Jun-2022 10:11:03 | > Task :jalviewjsSyncBuildProperties |
| 09-Jun-2022 10:11:03 | Caching disabled for task ':jalviewjsSyncBuildProperties' because: |
| 09-Jun-2022 10:11:03 | Build cache is disabled |
| 09-Jun-2022 10:11:03 | Task ':jalviewjsSyncBuildProperties' is not up-to-date because: |
| 09-Jun-2022 10:11:03 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed. |
| 09-Jun-2022 10:11:03 | :jalviewjsSyncBuildProperties (Thread[included builds,5,main]) completed. Took 0.109 secs. |
| 09-Jun-2022 10:11:03 | :jalviewjsBuildAllCores (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:05 | |
| 09-Jun-2022 10:11:05 | > Task :jalviewjsBuildAllCores |
| 09-Jun-2022 10:11:05 | Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons: |
| 09-Jun-2022 10:11:05 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 09-Jun-2022 10:11:05 | Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation |
| 09-Jun-2022 10:11:05 | Caching disabled for task ':jalviewjsBuildAllCores' because: |
| 09-Jun-2022 10:11:05 | Build cache is disabled |
| 09-Jun-2022 10:11:05 | Task ':jalviewjsBuildAllCores' is not up-to-date because: |
| 09-Jun-2022 10:11:05 | Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. |
| 09-Jun-2022 10:11:05 | Creating core for jalview... |
| 09-Jun-2022 10:11:05 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js |
| 09-Jun-2022 10:11:05 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js |
| 09-Jun-2022 10:11:05 | |
| 09-Jun-2022 10:11:05 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js' |
| 09-Jun-2022 10:11:05 | |
| 09-Jun-2022 10:11:05 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js |
| 09-Jun-2022 10:11:05 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 09-Jun-2022 10:11:13 | -- |
| 09-Jun-2022 10:11:13 | Creating core for jvexamplefile... |
| 09-Jun-2022 10:11:13 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js |
| 09-Jun-2022 10:11:13 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js |
| 09-Jun-2022 10:11:13 | |
| 09-Jun-2022 10:11:13 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js' |
| 09-Jun-2022 10:11:13 | |
| 09-Jun-2022 10:11:13 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvexamplefile.z.js |
| 09-Jun-2022 10:11:13 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 09-Jun-2022 10:11:15 | -- |
| 09-Jun-2022 10:11:15 | Creating core for _jalview... |
| 09-Jun-2022 10:11:15 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js |
| 09-Jun-2022 10:11:15 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js |
| 09-Jun-2022 10:11:15 | |
| 09-Jun-2022 10:11:15 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js' |
| 09-Jun-2022 10:11:15 | |
| 09-Jun-2022 10:11:15 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_jalview.z.js |
| 09-Jun-2022 10:11:15 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 09-Jun-2022 10:11:16 | -- |
| 09-Jun-2022 10:11:16 | Creating core for _stevesoft... |
| 09-Jun-2022 10:11:16 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js |
| 09-Jun-2022 10:11:16 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js |
| 09-Jun-2022 10:11:16 | |
| 09-Jun-2022 10:11:16 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js' |
| 09-Jun-2022 10:11:16 | |
| 09-Jun-2022 10:11:16 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/core_stevesoft.z.js |
| 09-Jun-2022 10:11:16 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 09-Jun-2022 10:11:19 | -- |
| 09-Jun-2022 10:11:19 | :jalviewjsBuildAllCores (Thread[included builds,5,main]) completed. Took 15.876 secs. |
| 09-Jun-2022 10:11:19 | :jalviewjsPublishCoreTemplates (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:19 | |
| 09-Jun-2022 10:11:19 | > Task :jalviewjsPublishCoreTemplates |
| 09-Jun-2022 10:11:19 | Caching disabled for task ':jalviewjsPublishCoreTemplates' because: |
| 09-Jun-2022 10:11:19 | Build cache is disabled |
| 09-Jun-2022 10:11:19 | Task ':jalviewjsPublishCoreTemplates' is not up-to-date because: |
| 09-Jun-2022 10:11:19 | Output property '$1$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jalview.html has been removed. |
| 09-Jun-2022 10:11:19 | Output property '$1$2' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_core/JalviewJS_jvexamplefile.html has been removed. |
| 09-Jun-2022 10:11:19 | Output property '$1$3' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/tmp/site_core/JalviewJS__jalview.html has been removed. |
| 09-Jun-2022 10:11:19 | :jalviewjsPublishCoreTemplates (Thread[included builds,5,main]) completed. Took 0.019 secs. |
| 09-Jun-2022 10:11:19 | :jalviewjsSyncCore (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:19 | |
| 09-Jun-2022 10:11:19 | > Task :jalviewjsSyncCore |
| 09-Jun-2022 10:11:19 | Caching disabled for task ':jalviewjsSyncCore' because: |
| 09-Jun-2022 10:11:19 | Build cache is disabled |
| 09-Jun-2022 10:11:19 | Task ':jalviewjsSyncCore' is not up-to-date because: |
| 09-Jun-2022 10:11:19 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/JalviewJS__jalview.html has been removed. |
| 09-Jun-2022 10:11:19 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/JalviewJS__stevesoft.html has been removed. |
| 09-Jun-2022 10:11:19 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/JalviewJS_jalview.html has been removed. |
| 09-Jun-2022 10:11:19 | :jalviewjsSyncCore (Thread[included builds,5,main]) completed. Took 0.185 secs. |
| 09-Jun-2022 10:11:19 | :copyChannelResources (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:19 | |
| 09-Jun-2022 10:11:19 | > Task :copyChannelResources |
| 09-Jun-2022 10:11:19 | Execution optimizations have been disabled for task ':copyChannelResources' to ensure correctness due to the following reasons: |
| 09-Jun-2022 10:11:19 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 09-Jun-2022 10:11:19 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/resources/resources_build'. Reason: Task ':jalviewjsSyncBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 09-Jun-2022 10:11:19 | Invalidating VFS because task ':copyChannelResources' failed validation |
| 09-Jun-2022 10:11:19 | Caching disabled for task ':copyChannelResources' because: |
| 09-Jun-2022 10:11:19 | Build cache is disabled |
| 09-Jun-2022 10:11:19 | Task ':copyChannelResources' is not up-to-date because: |
| 09-Jun-2022 10:11:19 | Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. |
| 09-Jun-2022 10:11:19 | :copyChannelResources (Thread[included builds,5,main]) completed. Took 0.015 secs. |
| 09-Jun-2022 10:11:19 | :buildResources (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:19 | |
| 09-Jun-2022 10:11:19 | > Task :buildResources |
| 09-Jun-2022 10:11:19 | Skipping task ':buildResources' as it has no actions. |
| 09-Jun-2022 10:11:19 | :buildResources (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:19 | :jalviewjsSyncResources (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:20 | |
| 09-Jun-2022 10:11:20 | > Task :jalviewjsSyncResources |
| 09-Jun-2022 10:11:20 | Caching disabled for task ':jalviewjsSyncResources' because: |
| 09-Jun-2022 10:11:20 | Build cache is disabled |
| 09-Jun-2022 10:11:20 | Task ':jalviewjsSyncResources' is not up-to-date because: |
| 09-Jun-2022 10:11:20 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has changed. |
| 09-Jun-2022 10:11:20 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/AmbiguityCodes.dat has been removed. |
| 09-Jun-2022 10:11:20 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/swingjs/j2s/authors.props has been removed. |
| 09-Jun-2022 10:11:20 | :jalviewjsSyncResources (Thread[included builds,5,main]) completed. Took 0.18 secs. |
| 09-Jun-2022 10:11:20 | :jalviewjsSyncSiteResources (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:20 | |
| 09-Jun-2022 10:11:20 | > Task :jalviewjsSyncSiteResources |
| 09-Jun-2022 10:11:20 | Caching disabled for task ':jalviewjsSyncSiteResources' because: |
| 09-Jun-2022 10:11:20 | Build cache is disabled |
| 09-Jun-2022 10:11:20 | Task ':jalviewjsSyncSiteResources' is not up-to-date because: |
| 09-Jun-2022 10:11:20 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/jalview_bin_JalviewJS2.html has changed. |
| 09-Jun-2022 10:11:20 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/applets-nocore.html has been removed. |
| 09-Jun-2022 10:11:20 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/jalviewjs/site/applets.html has been removed. |
| 09-Jun-2022 10:11:20 | :jalviewjsSyncSiteResources (Thread[included builds,5,main]) completed. Took 0.246 secs. |
| 09-Jun-2022 10:11:20 | :jalviewjsPrepareSite (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:20 | |
| 09-Jun-2022 10:11:20 | > Task :jalviewjsPrepareSite |
| 09-Jun-2022 10:11:20 | Skipping task ':jalviewjsPrepareSite' as it has no actions. |
| 09-Jun-2022 10:11:20 | :jalviewjsPrepareSite (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:20 | :jalviewjsBuildSite (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:20 | |
| 09-Jun-2022 10:11:20 | > Task :jalviewjsBuildSite |
| 09-Jun-2022 10:11:20 | Skipping task ':jalviewjsBuildSite' as it has no actions. |
| 09-Jun-2022 10:11:20 | :jalviewjsBuildSite (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:20 | :jalviewjs (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:20 | |
| 09-Jun-2022 10:11:20 | > Task :jalviewjs |
| 09-Jun-2022 10:11:20 | Skipping task ':jalviewjs' as it has no actions. |
| 09-Jun-2022 10:11:20 | :jalviewjs (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:20 | :jalviewjsSiteTar (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:22 | |
| 09-Jun-2022 10:11:22 | > Task :jalviewjsSiteTar |
| 09-Jun-2022 10:11:22 | Caching disabled for task ':jalviewjsSiteTar' because: |
| 09-Jun-2022 10:11:22 | Build cache is disabled |
| 09-Jun-2022 10:11:22 | Task ':jalviewjsSiteTar' is not up-to-date because: |
| 09-Jun-2022 10:11:22 | Output property 'archiveFile' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GJ2B-JOB1/build/distributions/jalviewjs-site-TEST.tar.gz has been removed. |
| 09-Jun-2022 10:11:22 | :jalviewjsSiteTar (Thread[included builds,5,main]) completed. Took 2.717 secs. |
| 09-Jun-2022 10:11:22 | producer locations for task group 1 (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:22 | producer locations for task group 1 (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:22 | producer locations for task group 2 (Thread[Execution worker for ':' Thread 3,5,main]) started. |
| 09-Jun-2022 10:11:22 | producer locations for task group 3 (Thread[included builds,5,main]) started. |
| 09-Jun-2022 10:11:22 | producer locations for task group 2 (Thread[Execution worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:22 | producer locations for task group 3 (Thread[included builds,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:22 | producer locations for task group 4 (Thread[Execution worker for ':' Thread 3,5,main]) started. |
| 09-Jun-2022 10:11:22 | producer locations for task group 4 (Thread[Execution worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. |
| 09-Jun-2022 10:11:22 | |
| 09-Jun-2022 10:11:22 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 09-Jun-2022 10:11:22 | |
| 09-Jun-2022 10:11:22 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 09-Jun-2022 10:11:22 | |
| 09-Jun-2022 10:11:22 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 09-Jun-2022 10:11:22 | |
| 09-Jun-2022 10:11:22 | Execution optimizations have been disabled for 2 invalid unit(s) of work during this build to ensure correctness. |
| 09-Jun-2022 10:11:22 | Please consult deprecation warnings for more details. |
| 09-Jun-2022 10:11:22 | |
| 09-Jun-2022 10:11:22 | BUILD SUCCESSFUL in 1m 33s |
| 09-Jun-2022 10:11:22 | 25 actionable tasks: 23 executed, 2 up-to-date |
| 09-Jun-2022 10:11:23 | Finished task 'JalviewJS build site and distributable tar' with result: Success |
| 09-Jun-2022 10:11:23 | Running post build plugin 'NCover Results Collector' |
| 09-Jun-2022 10:11:23 | Running post build plugin 'Artifact Copier' |
| 09-Jun-2022 10:11:23 | Publishing an artifact: JalviewJS site tar file |
| 09-Jun-2022 10:11:23 | Finished publishing of artifact Shared artifact: [JalviewJS site tar file], pattern: [jalviewjs-site-*.tar.gz] anchored at: [build/distributions/] in 22.08 ms |
| 09-Jun-2022 10:11:23 | Publishing an artifact: JalviewJS site |
| 09-Jun-2022 10:11:24 | Finished publishing of artifact Shared artifact: [JalviewJS site], pattern: [**/*] anchored at: [build/jalviewjs/site] in 1.068 s |
| 09-Jun-2022 10:11:24 | Running post build plugin 'Artifactory Release Management Staging' |
| 09-Jun-2022 10:11:24 | Running post build plugin 'Artifactory Build Info Copier' |
| 09-Jun-2022 10:11:24 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 09-Jun-2022 10:11:24 | Running post build plugin 'npm Cache Cleanup' |
| 09-Jun-2022 10:11:24 | Running post build plugin 'Clover Results Collector' |
| 09-Jun-2022 10:11:24 | Running post build plugin 'Docker Container Cleanup' |
| 09-Jun-2022 10:11:24 | Finalising the build... |
| 09-Jun-2022 10:11:24 | Stopping timer. |
| 09-Jun-2022 10:11:24 | Build JB-GJ2B-JOB1-4 completed. |
| 09-Jun-2022 10:11:24 | Running on server: post build plugin 'NCover Results Collector' |
| 09-Jun-2022 10:11:24 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 09-Jun-2022 10:11:24 | Running on server: post build plugin 'Clover Delta Calculator' |
| 09-Jun-2022 10:11:24 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 09-Jun-2022 10:11:24 | All post build plugins have finished |
| 09-Jun-2022 10:11:24 | Generating build results summary... |
| 09-Jun-2022 10:11:24 | Saving build results to disk... |
| 09-Jun-2022 10:11:24 | Logging substituted variables... |
| 09-Jun-2022 10:11:24 | Indexing build results... |
| 09-Jun-2022 10:11:24 | Finished building JB-GJ2B-JOB1-4. |