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JIRA Issues
This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.
| Type | Key | Summary | Status | Assignee | Fix versions | Related Builds | Last Built |
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JAL-1551 | Standard source code formatting and editing settings | In Progress | Mungo Carstairs | 5 related builds | Last built: 5 days ago | |
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JAL-3018 | Check Ensembl REST change log, update version number | Open | James Procter | 9 related builds | Last built: 5 days ago | |
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JAL-3064 | Hookup Jalview-JS clipboard to the browser clipboard | Open | Unassigned | 9 related builds | Last built: 5 days ago | |
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JAL-3393 | DMG opened Finder window improvements | Reopened | Ben Soares | 2.11.1, 2.11.1.0 | 6 related builds | Last built: 5 days ago |
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JAL-3631 | Allow jalview auto-updates to download to and work from separate user-space directory | Closed | Ben Soares | 2.11.4.0 | 8 related builds | Last built: 5 days ago |
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JAL-4100 | ncRNA and genes without product attributes are not imported from Genbank and EMBL format files | Open | Unassigned | 7 related builds | Last built: 5 days ago | |
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JAL-4111 | Allow gradle build to create suffixed DEVELOP-... builds with channel appbase | Closed | Ben Soares | 2.11.3.0, 2.12.0 | 10 related builds | Last built: 5 days ago |
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JAL-4159 | PaSiMap inclusion | Closed | Thomas Morell | 2.11.4.0 | 12 related builds | Last built: 5 days ago |
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JAL-4328 | Some ensembl queries may not work reliably in 2.11.3.0, 2.11.4.0 | Closed | Ben Soares | 2.11.4.0 | 5 related builds | Last built: 5 days ago |
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JAL-4386 | Calculate tree using secondary structure annotation | In Progress | James Procter | 2.11.4.0, 2.11.5.0 | 9 related builds | Last built: 5 days ago |
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JAL-4398 | The rendering of the text "Window" for the Window menu item is different to the other menus | Closed | Ben Soares | 2.11.4.0 | 7 related builds | Last built: 5 days ago |
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JAL-4418 | Jalview 2.11.4.0 release | Being documented | James Procter | 2.11.4.0 | 38 related builds | Last built: 5 days ago |
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JAL-4420 | Jalview could recognise .features, .annotations and .newick files belonging to an alignment file when all dragged-and-dropped onto it | In Progress | Ben Soares | 2.11.4.0, 2.11.5.0 | 9 related builds | Last built: 5 days ago |
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JAL-4421 | Release installer DMG does not display the background image | Ready for testing | Ben Soares | 2.11.4, 2.12 | 8 related builds | Last built: 5 days ago |
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JAL-4427 | Annotation labels from protein disorder services include html tags from description | Closed | Renia Correya | 2.11.4.0 | 10 related builds | Last built: 5 days ago |
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JAL-4428 | integrate OSX codesigning scripts in jalview's repository | Closed | Ben Soares | 2.11.4.0 | 7 related builds | Last built: 5 days ago |
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JAL-4435 | Label sequence groups and tree internal nodes with diversity information | In Progress | Renia Correya | 2.11.5.0 | 3 related builds | Last built: 5 days ago |
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JAL-4436 | Colour by secondary structure conservation | In Progress | Renia Correya | 2.11.5.0 | 5 related builds | Last built: 5 days ago |
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JAL-4444 | Windows jalview_x copies of command line BAT and PS1 launcher and update scripts are not updated through getdown | Closed | Ben Soares | 2.11.4.0 | 2 related builds | Last built: 5 days ago |
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JAL-4446 | display eta for PaSiMap and allow it to be cancelled | Closed | James Procter | 2.11.4.0 | 8 related builds | Last built: 5 days ago |
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JAL-4447 | Improved reporting of analysis parameters in PCA, Pairwise alignment and others | Closed | James Procter | 2.11.4.0 | 6 related builds | Last built: 5 days ago |
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JAL-4449 | Ensembl sequence retrieval broken in 2.11.4.0rc2 | Closed | Ben Soares | 2.11.4.0 | 9 related builds | Last built: 5 days ago |
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JAL-4450 | Sequence letter aspect ratio not set correctly when aspect ratio is very narrow after middle-mouse drag | Open | James Procter | 9 related builds | Last built: 5 days ago | |
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JAL-4451 | better handling of annotation rows with html descriptions but the same label | Closed | Renia Correya | 2.11.4.0 | 5 related builds | Last built: 5 days ago |
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JAL-4454 | "Getdown DEVELOP Channel" linkCheck fails if there's a link to whatsNew#experimental or releaseHistory from other help pages | Closed | James Procter | 2.11.4.0 | 8 related builds | Last built: 5 days ago |