Build #2

Create easy access JVL files/links for launching in Jalview Develop

Build: #2 was successful

Job: Default Job was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 192 lines of output. Download or view full build log

17-Feb-2025 16:45:46 Build Jalview Builds - Getdown DEVELOP Launchers - develop - Default Job #2 (JB-GDL52-JOB1-2) started building on agent Default Agent
17-Feb-2025 16:45:46
17-Feb-2025 16:45:46 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
17-Feb-2025 16:45:46 Executing build Jalview Builds - Getdown DEVELOP Launchers - develop - Default Job #2 (JB-GDL52-JOB1-2)
17-Feb-2025 16:45:46 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
17-Feb-2025 16:45:46 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
17-Feb-2025 16:45:46 Updating source code to revision: 637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
17-Feb-2025 16:45:46 Fetching 'refs/heads/develop' from 'https://gitlab.jalview.org/jalview/jalview.git'.
17-Feb-2025 16:45:46 Checking out revision 637f19e96cfb28244fe2adb13e36d0cbe16dbe6c.
17-Feb-2025 16:45:46 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0
17-Feb-2025 16:45:46    682f7b6..637f19e  develop    -> origin/develop
17-Feb-2025 16:45:46 * [new branch]      releases/Release_2_11_4_Branch -> origin/releases/Release_2_11_4_Branch
17-Feb-2025 16:45:48 Already on 'develop'
17-Feb-2025 16:45:48 Your branch is behind 'origin/develop' by 1 commit, and can be fast-forwarded.
17-Feb-2025 16:45:48   (use "git pull" to update your local branch)
17-Feb-2025 16:45:48 HEAD is now at 637f19e JAL-4490 release notes for JAL-4491 JAL-4503 JAL-4504 JAL-629
17-Feb-2025 16:45:48 Updated source code to revision: 637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
17-Feb-2025 16:45:48 Finished task 'Checkout Default Repository' with result: Success
17-Feb-2025 16:45:48 Running pre-build action: VCS Version Collector
17-Feb-2025 16:45:48 Running pre-build action: Artifactory Release Staging
17-Feb-2025 16:45:48
Substituting variable: ${bamboo.planKey} with JB-GDL52
17-Feb-2025 16:45:48 Starting task 'Jalview Develop Launcher JVL (Java 11)' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
17-Feb-2025 16:45:48 Bamboo Artifactory Plugin version: 2.6.2
17-Feb-2025 16:45:48
Beginning to execute external process for build 'Jalview Builds - Getdown DEVELOP Launchers - develop - Default Job #2 (JB-GDL52-JOB1-2)'
... running command line:
/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=BUILD -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GDL52 -Pbamboo_buildResultsUrl=${bamboo_buildResultsUrl} -Pbamboo_buildResultKey=${bamboo_buildResultKey} clean getdown
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=develop
bamboo_repository_46498277_name=Jalview Gitlab
bamboo_dependency_parent_0=JB-GDB663-2
bamboo_repository_46498277_git_username=
bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr
CATALINA_PID=/home/bamboo/latest/work/bamboo.pid
bamboo_dependency_parent_total=1
bamboo_planRepository_1_branchDisplayName=develop
bamboo_repository_revision_number=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDL52-JOB1-2
JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048
bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
bamboo_planRepository_1_name=Jalview Gitlab
bamboo_buildKey=JB-GDL52-JOB1
bamboo_shortPlanName=develop
bamboo_planRepository_name=Jalview Gitlab
LOGNAME=bamboo
bamboo_buildNumber=2
PWD=/
bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse
bamboo_shortJobName=Default Job
bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDL52-JOB1-2
bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
SHELL=/bin/bash
bamboo_agentId=196609
bamboo_planName=Jalview Builds - Getdown DEVELOP Launchers - develop
bamboo_shortPlanKey=GDL52
bamboo_shortJobKey=JOB1
bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk
bamboo_planRepository_revision=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_repository_46498277_git_branch=develop
bamboo_buildTimeStamp=2025-02-17T16:28:48.332Z
bamboo_repository_previous_revision_number=682f7b6022e3ed24d22e24fc2da6eb922a493ecd
bamboo_repository_46498277_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_repository_git_branch=develop
bamboo_buildResultKey=JB-GDL52-JOB1-2
bamboo_repository_branch_name=develop
bamboo_buildPlanName=Jalview Builds - Getdown DEVELOP Launchers - develop - Default Job
bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11
bamboo_planRepository_1_revision=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
SHLVL=1
bamboo_CHANNEL=DEVELOP
bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant
bamboo_repository_46498277_revision_number=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_repository_name=Jalview Gitlab
JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/
bamboo_repository_46498277_branch_name=develop
LANG=en_GB.UTF-8
bamboo_buildFailed=false
bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk
bamboo_repository_46498277_previous_revision_number=682f7b6022e3ed24d22e24fc2da6eb922a493ecd
bamboo_planRepository_branch=develop
bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609
bamboo_capability_system_git_executable=/bin/git
bamboo_repository_git_username=
bamboo_planRepository_branchDisplayName=develop
bamboo_planRepository_1_type=gitv2
bamboo_planRepository_branchName=develop
_=/usr/bin/java
bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11
bamboo_capability_system_builderivy_Ivy=/usr
bamboo_plan_storageTag=plan-46302139
bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle
bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache
bamboo_planRepository_1_username=
bamboo_planRepository_type=gitv2
USER=bamboo
bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache
bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp
bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
bamboo_planKey=JB-GDL52
bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_planRepository_username=
HOME=/home/bamboo
bamboo_planRepository_1_branchName=develop
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
17-Feb-2025 16:45:50
17-Feb-2025 16:45:50 > Configure project :
17-Feb-2025 16:45:50 Using properties from file './utils/channels/default/channel_gradle.properties'
17-Feb-2025 16:45:50 JALVIEW_VERSION is set to '2.11.4.2'
17-Feb-2025 16:45:50 HEADLESS BUILD
17-Feb-2025 16:45:50 J2S ENABLED
17-Feb-2025 16:45:50 Using a BUILD profile.
17-Feb-2025 16:45:50 eclipseDir exists
17-Feb-2025 16:45:50
17-Feb-2025 16:45:50 > Task :clean
17-Feb-2025 16:45:50 > Task :cleanPackageDir
17-Feb-2025 16:45:50 > Task :getdownImagesCopy
17-Feb-2025 16:45:51 > Task :getdownImagesProcess
17-Feb-2025 16:45:51 > Task :getdownImages
17-Feb-2025 16:45:51 > Task :copyHelp
17-Feb-2025 16:45:53 > Task :buildIndices
17-Feb-2025 16:45:53 > Task :copyResources
17-Feb-2025 16:45:53 > Task :copyChannelResources
17-Feb-2025 16:45:53
17-Feb-2025 16:45:53 > Task :createBuildProperties
17-Feb-2025 16:45:53 Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
17-Feb-2025 16:45:53   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:45:53
17-Feb-2025 16:45:53 > Task :buildResources
17-Feb-2025 16:45:53 > Task :copyDocs
17-Feb-2025 16:45:53
17-Feb-2025 16:45:53 > Task :convertMdFiles
17-Feb-2025 16:45:53 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
17-Feb-2025 16:45:53 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build/doc/releaseprocess.html
17-Feb-2025 16:45:53 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
17-Feb-2025 16:45:53 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build/doc/building.html
17-Feb-2025 16:45:53 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build/doc/jalview-projects.html
17-Feb-2025 16:45:53
17-Feb-2025 16:45:53 > Task :releasesTemplates
17-Feb-2025 16:45:53 Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
17-Feb-2025 16:45:53   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:45:53   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:45:53 Stripping rc/test/etc for 2_11_4_2
17-Feb-2025 16:45:53 Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/help/markdown/whatsnew/whatsnew-2_11_4_2.md
17-Feb-2025 16:45:53
17-Feb-2025 16:45:53 > Task :prepare
17-Feb-2025 16:45:55
17-Feb-2025 16:45:55 > Task :compileJava
17-Feb-2025 16:45:55 Setting target compatibility to 11
17-Feb-2025 16:46:01 Note: Some input files use or override a deprecated API.
17-Feb-2025 16:46:01 Note: Recompile with -Xlint:deprecation for details.
17-Feb-2025 16:46:01 Note: Some input files use unchecked or unsafe operations.
17-Feb-2025 16:46:01 Note: Recompile with -Xlint:unchecked for details.
17-Feb-2025 16:46:02
17-Feb-2025 16:46:02 > Task :processResources
17-Feb-2025 16:46:02 Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons:
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:02
17-Feb-2025 16:46:02 > Task :classes
17-Feb-2025 16:46:03
17-Feb-2025 16:46:03 > Task :compileLinkCheck
17-Feb-2025 16:46:03 Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons:
17-Feb-2025 16:46:03   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:03   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:03   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1/utils'. Reason: Task ':getdownImagesCopy' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
17-Feb-2025 16:46:04
17-Feb-2025 16:46:04 > Task :linkCheck
17-Feb-2025 16:46:04 Checking help file links
17-Feb-2025 16:46:04
17-Feb-2025 16:46:04 Results:
17-Feb-2025 16:46:04 159 distinct help targets
17-Feb-2025 16:46:04 159 help mappings
17-Feb-2025 16:46:04 0 invalid targets
17-Feb-2025 16:46:04 32 unused targets
17-Feb-2025 16:46:04     uniprotfetcher: html/features/uniprotsequencefetcher.html
17-Feb-2025 16:46:04     overviewprefs: html/features/preferences.html#overview
17-Feb-2025 16:46:04     cdnafeatures: html/features/codingfeatures.html
17-Feb-2025 16:46:04     startupprefs: html/features/preferences.html#startup
17-Feb-2025 16:46:04     ensemblfetch: html/features/ensemblsequencefetcher.html
17-Feb-2025 16:46:04     io.modellerpir: html/io/modellerpir.html
17-Feb-2025 16:46:04     structureandpaefromfile: html/features/structurechooser.html#loadfromfile
17-Feb-2025 16:46:04     pdbmcviewer: html/features/pdbviewer.html
17-Feb-2025 16:46:04     workingwithpae: html/features/paematrices.html
17-Feb-2025 16:46:04     groovy.colours: html/features/groovy.html#groovyColours
17-Feb-2025 16:46:04     seqmappings: html/features/seqmappings.html
17-Feb-2025 16:46:04     uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts
17-Feb-2025 16:46:04     splitframe.mirrorfonts: html/features/splitView.html#mirror
17-Feb-2025 16:46:04     subtMatrices.pam250: html/calculations/scorematrices.html#pam250
17-Feb-2025 16:46:04     search: html/features/search.html
17-Feb-2025 16:46:04     viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
17-Feb-2025 16:46:04     alformats: html/io/fileformats.html
17-Feb-2025 16:46:04     strucprefs: html/features/preferences.html#structure
17-Feb-2025 16:46:04     siftsmapping: html/features/siftsmapping.html
17-Feb-2025 16:46:04     chimera.annotxfer: html/features/chimera.html#annotxfer
17-Feb-2025 16:46:04     pdbfts: html/features/pdbsequencefetcher.html#pdbfts
17-Feb-2025 16:46:04     newkeys: html/features/newkeystrokes.html
17-Feb-2025 16:46:04     importvcf.attribs: html/features/importvcf.html#attribs
17-Feb-2025 16:46:04     seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
17-Feb-2025 16:46:04     structuresvia3dbeacons: html/features/structurechooser.html#3dbeaconssearch
17-Feb-2025 16:46:04     jalarchive: html/features/jalarchive.html
17-Feb-2025 16:46:04     newsreader: html/webServices/newsreader.html
17-Feb-2025 16:46:04     jalviewcltool: html/features/commandline.html#script
17-Feb-2025 16:46:04     popMenuAddref: html/menus/popupMenu.html#addrefannot
17-Feb-2025 16:46:04     splitframe.virtualfeats: html/features/splitView.html#virtualfeats
17-Feb-2025 16:46:04     paematrixformat: html/io/paematrixformat.html
17-Feb-2025 16:46:04     overview: html/features/overview.html
17-Feb-2025 16:46:04 0 invalid map urls
17-Feb-2025 16:46:04 0 invalid image attributes
17-Feb-2025 16:46:04 508 internal href links (110 with anchors)
17-Feb-2025 16:46:04 0 invalid internal href links
17-Feb-2025 16:46:04 0 invalid internal anchor links
17-Feb-2025 16:46:04 113 external href links
17-Feb-2025 16:46:04 External links not verified as internet not available
17-Feb-2025 16:46:04 *** Success ***
17-Feb-2025 16:46:05
17-Feb-2025 16:46:05 > Task :jar
17-Feb-2025 16:46:05 > Task :syncJars
17-Feb-2025 16:46:05 > Task :makeDist
17-Feb-2025 16:46:05 > Task :getdownWebsiteBuild
17-Feb-2025 16:46:07 2025/02/17 16:46:06:011 WARNING Starting without install4j classes
17-Feb-2025 16:46:07 2025/02/17 16:46:06:676 WARNING Starting without install4j classes
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 > Task :getdownDigest
17-Feb-2025 16:46:07 Generating digest file './build/website/docroot/getdown/default/11/digest.txt'...
17-Feb-2025 16:46:07 Generating digest file './build/website/docroot/getdown/default/11/digest2.txt'...
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 > Task :getdown
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness.
17-Feb-2025 16:46:07 Please consult deprecation warnings for more details.
17-Feb-2025 16:46:07
17-Feb-2025 16:46:07 BUILD SUCCESSFUL in 18s
17-Feb-2025 16:46:07 21 actionable tasks: 21 executed
17-Feb-2025 16:46:07 Finished task 'Jalview Develop Launcher JVL (Java 11)' with result: Success
17-Feb-2025 16:46:07 Starting task 'Copy JVL file and produce link in HTML' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
17-Feb-2025 16:46:07
Beginning to execute external process for build 'Jalview Builds - Getdown DEVELOP Launchers - develop - Default Job #2 (JB-GDL52-JOB1-2)'
... running command line:
/srv/bamboo/bamboo-home/temp/JB-GDL52-JOB1-2-ScriptBuildTask-5020524067076946248.sh
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=develop
bamboo_repository_46498277_name=Jalview Gitlab
bamboo_dependency_parent_0=JB-GDB663-2
bamboo_repository_46498277_git_username=
bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr
bamboo_dependency_parent_total=1
bamboo_planRepository_1_branchDisplayName=develop
bamboo_repository_revision_number=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDL52-JOB1-2
bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
bamboo_planRepository_1_name=Jalview Gitlab
bamboo_buildKey=JB-GDL52-JOB1
bamboo_shortPlanName=develop
bamboo_planRepository_name=Jalview Gitlab
bamboo_buildNumber=2
bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse
bamboo_shortJobName=Default Job
bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDL52-JOB1-2
bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_agentId=196609
bamboo_planName=Jalview Builds - Getdown DEVELOP Launchers - develop
bamboo_shortPlanKey=GDL52
bamboo_shortJobKey=JOB1
bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk
bamboo_planRepository_revision=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_repository_46498277_git_branch=develop
bamboo_buildTimeStamp=2025-02-17T16:28:48.332Z
bamboo_repository_previous_revision_number=682f7b6022e3ed24d22e24fc2da6eb922a493ecd
bamboo_repository_46498277_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_repository_git_branch=develop
bamboo_buildResultKey=JB-GDL52-JOB1-2
bamboo_repository_branch_name=develop
bamboo_buildPlanName=Jalview Builds - Getdown DEVELOP Launchers - develop - Default Job
bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11
bamboo_planRepository_1_revision=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_CHANNEL=DEVELOP
bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant
bamboo_repository_46498277_revision_number=637f19e96cfb28244fe2adb13e36d0cbe16dbe6c
bamboo_repository_name=Jalview Gitlab
bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=BUILD -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GDL52 -Pbamboo_buildResultsUrl=${bamboo_buildResultsUrl} -Pbamboo_buildResultKey=${bamboo_buildResultKey} clean getdown
bamboo_repository_46498277_branch_name=develop
bamboo_buildFailed=false
bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk
bamboo_repository_46498277_previous_revision_number=682f7b6022e3ed24d22e24fc2da6eb922a493ecd
bamboo_planRepository_branch=develop
bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609
bamboo_capability_system_git_executable=/bin/git
bamboo_repository_git_username=
bamboo_planRepository_branchDisplayName=develop
bamboo_planRepository_1_type=gitv2
bamboo_planRepository_branchName=develop
bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11
bamboo_capability_system_builderivy_Ivy=/usr
bamboo_plan_storageTag=plan-46302139
bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle
bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache
bamboo_planRepository_1_username=
bamboo_planRepository_type=gitv2
bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache
bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp
bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDL52-JOB1
bamboo_planKey=JB-GDL52
bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_planRepository_username=
bamboo_planRepository_1_branchName=develop
17-Feb-2025 16:46:07 Finished task 'Copy JVL file and produce link in HTML' with result: Success
17-Feb-2025 16:46:07 Running post build plugin 'NCover Results Collector'
17-Feb-2025 16:46:07 Running post build plugin 'Artifact Copier'
17-Feb-2025 16:46:07 Publishing an artifact: getdown
17-Feb-2025 16:46:07 Finished publishing of artifact Shared artifact: [getdown], pattern: [**/*] anchored at: [build/website/docroot/getdown/default/11] in 92.83 ms
17-Feb-2025 16:46:07 Running post build plugin 'Artifactory Release Management Staging'
17-Feb-2025 16:46:07 Running post build plugin 'Artifactory Build Info Copier'
17-Feb-2025 16:46:07 Running post build plugin 'Artifactory Gradle Properties Info Copier'
17-Feb-2025 16:46:07 Running post build plugin 'npm Cache Cleanup'
17-Feb-2025 16:46:07 Running post build plugin 'Clover Results Collector'
17-Feb-2025 16:46:07 Running post build plugin 'Docker Container Cleanup'
17-Feb-2025 16:46:07 Finalising the build...
17-Feb-2025 16:46:07 Stopping timer.
17-Feb-2025 16:46:07 Build JB-GDL52-JOB1-2 completed.
17-Feb-2025 16:46:07 Running on server: post build plugin 'NCover Results Collector'
17-Feb-2025 16:46:07 Running on server: post build plugin 'Build Hanging Detection Configuration'
17-Feb-2025 16:46:07 Running on server: post build plugin 'Clover Delta Calculator'
17-Feb-2025 16:46:07 Running on server: post build plugin 'Maven Dependencies Postprocessor'
17-Feb-2025 16:46:07 All post build plugins have finished
17-Feb-2025 16:46:07 Generating build results summary...
17-Feb-2025 16:46:07 Saving build results to disk...
17-Feb-2025 16:46:07 Logging substituted variables...
17-Feb-2025 16:46:07 Indexing build results...
17-Feb-2025 16:46:07 Finished building JB-GDL52-JOB1-2.