Jalview Git

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  Ben Soares <b.soares@dundee.ac.uk> 31 Oct 2024 946589ccc914b87a71083c00865593596f643b77

  Merge branch 'develop' into bug/JAL-4477_unmapped_filename_characters
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  James Procter <j.procter@dundee.ac.uk> 29 Oct 2024 9fb123cb29ccdfe0b7b54352fc9e012edfaa1796 m

  JAL-4473 JAL-4467 release notes

  • help/markdown/releases/release-2_11_4_1.md (version 9fb123cb29ccdfe0b7b54352fc9e012edfaa1796) (diffs)
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  James Procter <j.procter@dundee.ac.uk> 29 Oct 2024 b990d9832c25c962d03a4ea43a0524aa20960d27 m

  Merge branch 'bug/JAL-4467_getdownArchive_task_fails' into develop
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  James Procter <j.procter@dundee.ac.uk> 28 Oct 2024 6cbc639131c50ee7a255fa7e34fef8a8f97e9865 m

  JAL-4473 release date 29th Oct 2024

  • help/markdown/releases/release-2_11_4_1.md (version 6cbc639131c50ee7a255fa7e34fef8a8f97e9865) (diffs)
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  James Procter <j.procter@dundee.ac.uk> 28 Oct 2024 edd5699219c6a61ff619bbbc01ce7c48bce6b1f3 m

  JAL-4473 release notes for JAL-4380

  • help/markdown/releases/release-2_11_4_1.md (version edd5699219c6a61ff619bbbc01ce7c48bce6b1f3) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 28 Oct 2024 8afe00d88c23cb2f3c7ffa98ea44a31512999d54 m

  JAL-4380 Improved annotation tooltips especially secondary structure tooltips

  • src/jalview/gui/AnnotationPanel.java (version 8afe00d88c23cb2f3c7ffa98ea44a31512999d54) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 28 Oct 2024 cba2a7d7b9bea69f4a1a70b1b273c93a8e7322b0 m

  JAL-4380 Added information to annotation tooltips when description is not present

  • src/jalview/gui/AnnotationPanel.java (version cba2a7d7b9bea69f4a1a70b1b273c93a8e7322b0) (diffs)
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  James Procter <j.procter@dundee.ac.uk> 25 Oct 2024 ebbc0db211f16fc6c69e143d3027badebe899900 m

  Merge branch 'patch/fix_JAL-4470_JAL-4471_for_2_11_4_1' into develop
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  Gitlab User 04 Oct 2024 d5180397f74424e44495cffe9c822873fc974441 m

  JAL-4473 whatsNew 2.11.4.1

  • help/markdown/whatsnew/whatsnew-2_11_4_1.md (version d5180397f74424e44495cffe9c822873fc974441) (diffs)
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  Gitlab User 04 Oct 2024 c1b0c7cf530b405353da3d42c227af7e22edb461 m

  JAL-4473 new jalview patch release

  • help/markdown/releases/release-2_11_4_1.md (version c1b0c7cf530b405353da3d42c227af7e22edb461) (diffs)
  • RELEASE (version c1b0c7cf530b405353da3d42c227af7e22edb461) (diffs)
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  Gitlab User 04 Oct 2024 a0750c32b58b2861716f812331b4aea4ba7710b4 m

  fix for JAL-4471 - secondary structure similarity tree can only be computed for sequence-associated annotation(s)

  • src/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.java (version a0750c32b58b2861716f812331b4aea4ba7710b4) (diffs)
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  Gitlab User 04 Oct 2024 54b1c9efca00df99bc3a502fe76d3bbf98938b96 m

  JAL-4470 fix: check for workers!=null before checking its empty...

  • src/jalview/gui/PopupMenu.java (version 54b1c9efca00df99bc3a502fe76d3bbf98938b96) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 20 Sep 2024 004bcce3b9afea926ffe15514ce3080186a71d2b m

  JAL-4467 Take account of presource and xresource in the getdownArchiveBuild task

  • build.gradle (version 004bcce3b9afea926ffe15514ce3080186a71d2b) (diffs)