Build: #2 was successful Child of JB-GDB617-2
Code commits
Jalview Git
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Gitlab User e7bfd7141229e93961d676431233487da4e7789b
JAL-4418 fix linkCheck
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Gitlab User e937933118a48e607805629f9581c6fd6d274a33
JAL-4418 release 10th September
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Gitlab User e386ab351a5fae6088dc95e3be00cc70c17d8cee
Merge branch 'documentation/JAL-4418_2_11_4_0_docs' into develop
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Gitlab User 3296f8cb9d9f4c9f01f197e971ff625cd3be3ed7 m
Merge branch 'feature/JAL-4446_cancellable_pasimap_etal' into develop
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Gitlab User f40edd5d97571d331bd03489ef67858bbb2595bf m
JAL-4446 improved reporting of progress, and transition between cancelable and non-cancelable phases of pasimap calculation
- src/jalview/analysis/PaSiMap.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/gui/PaSiMapPanel.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/gui/PairwiseAlignPanel.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/gui/ProgressBar.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/viewmodel/PaSiMapModel.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
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Gitlab User 30c13c1638967753f7b1f9c880a92cc7308b1278 m
JAL-4446 refactor progress listener handler code for reuse
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Gitlab User 6ec1491ad65b1a0d63eff8277677a8ecd5ab354d m
Merge branch 'develop' into feature/JAL-4446_cancellable_pasimap_etal
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Gitlab User e69db6fc850b0e89328bb2dbc3d371930fa6c595 m
JAL-789 limit applicable score models to substitution matrix based ones
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Gitlab User 23eabe997df728d46b1333cbfd01407acba70908 m
JAL-4446 allow progress bar to become indeterminate after pairwise alignment step
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Gitlab User 695d7f4c7259087a58d01bdf3bbddd11aa59de79 m
Merge branch 'develop' into feature/JAL-4446_cancellable_pasimap_etal
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Gitlab User a51b5f709d28d8a25a3c2c4596cbe086aa34ea43 m
JAL-4447 standardised title formula for reporting score model and other parameters for pairwise alignment, PCA, tree, and Pasimap
- src/jalview/gui/AlignFrame.java (version a51b5f709d28d8a25a3c2c4596cbe086aa34ea43) (diffs)
- src/jalview/gui/CalculationChooser.java (version a51b5f709d28d8a25a3c2c4596cbe086aa34ea43) (diffs)
- src/jalview/gui/PCAPanel.java (version a51b5f709d28d8a25a3c2c4596cbe086aa34ea43) (diffs)
- src/jalview/gui/PaSiMapPanel.java (version a51b5f709d28d8a25a3c2c4596cbe086aa34ea43) (diffs)
- src/jalview/gui/PairwiseAlignPanel.java (version a51b5f709d28d8a25a3c2c4596cbe086aa34ea43) (diffs)
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Gitlab User a74f2604de0825eeeeda41158e9b9c1a32a2dd3c m
JAL-4446 reuse lasteta value
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Gitlab User 11cfa06b3572d711c3441c965e6340abcf20a4a2 m
JAL-4159 JAL-789 report pasimap and pairwise alignment parameters in window title
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Gitlab User 0c8213058cfc306cf459355543bcb93c546047dc m
JAL-4159 suppress pairwise alignment display options when not available from pasimap
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Gitlab User 39ef2c483d62e04129703d6acff8a594cc7e9b16 m
JAL-4446 better reporting of ETA estimation - particularly for large alignments
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Gitlab User df8c5515d51b26ef229cd2916a30d6a27f46c236 m
JAL-4446 avoid NPE when progress bar message is null
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Gitlab User 1a09df2fbacbdaf9a76ee5fe3b25925742bc78d9 m
JAL-4446 .. missing methods for cancellable pasimap
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Gitlab User 2f15cb2f6239cf3a51d2528f5f873273cdcc7936 m
JAL-4446 cancellable Pasimap - still need to make the actual pasimap CCA calculation cancellable and report progress
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Gitlab User 01dd0eed037513b5b2dbcd499dfd0cdd957cf0bd m
JAL-4446 calculate and report PaSiMap ETA in progress bar
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Gitlab User 84126942cf15bed4109e81345e2412425cfa48ed m
JAL-4446 allow progress bar message to be changed whilst progress continues & todo re desktop's custom progress implementation
- src/jalview/gui/AlignFrame.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/Desktop.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/IProgressIndicator.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/PCAPanel.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/PaSiMapPanel.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/ProgressBar.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/StructureChooser.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)
- src/jalview/gui/WebserviceInfo.java (version 84126942cf15bed4109e81345e2412425cfa48ed) (diffs)