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Code commits

Jalview Gitlab

  • Gitlab User

    Gitlab User 8120bc1d99b4cc4656f801b7355447e77cbecb61

    JAL-4678  split out to its own testTask

    • test/jalview/gui/StructureChooserTest.java (version 8120bc1d99b4cc4656f801b7355447e77cbecb61)
    • build.gradle (version 8120bc1d99b4cc4656f801b7355447e77cbecb61)
  • Gitlab User

    Gitlab User c69120010d6eb381a3001a73f16bd0f52af272b4

    JAL-4678 try several times to look for mappings.

    • test/jalview/gui/StructureChooserTest.java (version c69120010d6eb381a3001a73f16bd0f52af272b4)
  • Gitlab User

    Gitlab User be35cec3b9c3763f923ff0ead2b3f6665d8a3fa9

    JAL-4678 and even more waiting around...

    • test/jalview/gui/StructureChooserTest.java (version be35cec3b9c3763f923ff0ead2b3f6665d8a3fa9)
  • Gitlab User

    Gitlab User 7faec85fa88f6b5d244caf86fdd7a6b78a33e772

    JAL-4678 even more waiting around...

    • test/jalview/gui/StructureChooserTest.java (version 7faec85fa88f6b5d244caf86fdd7a6b78a33e772)
  • Gitlab User

    Gitlab User 4bda4dbce19001f3d4a107276bf56a9340c65951

    JAL-4678 (hack) need to wait around a bit more for Jmol to report strutures are loaded so jalview registers the mappings

    • test/jalview/gui/StructureChooserTest.java (version 4bda4dbce19001f3d4a107276bf56a9340c65951)
  • Gitlab User

    Gitlab User 42a0d140f17d6b0c5efc7d4f1b76f6145a53bd31

    JAL-4678 fix smelly logic and actually verify local file paths are equivalent

    • src/jalview/gui/AssociatePdbFileWithSeq.java (version 42a0d140f17d6b0c5efc7d4f1b76f6145a53bd31)
  • Gitlab User

    Gitlab User 87e3008ac24ef9a51400287baa32bb7f2b3ba401

    JAL-4678 convenience check for PDBEntries for a sequence

    • test/jalview/datamodel/SequenceTest.java (version 87e3008ac24ef9a51400287baa32bb7f2b3ba401)
    • src/jalview/datamodel/SequenceI.java (version 87e3008ac24ef9a51400287baa32bb7f2b3ba401)
  • Gitlab User

    Gitlab User 052f4003f332e4ac9a04bde999e72e7021d55ef9

    JAL-4672 stricter test for the SOLR endpoint, and a h^Hworkaround for the broken endpoint

    • test/jalview/fts/service/pdb/PDBFTSRestClientTest.java (version 052f4003f332e4ac9a04bde999e72e7021d55ef9)
    • src/jalview/gui/StructureChooser.java (version 052f4003f332e4ac9a04bde999e72e7021d55ef9)
  • Gitlab User

    Gitlab User 6a2daceff617cc8044a0464538b64fe9fca1d724

    JAL-4176 fix logic for checking if local file...

    • src/jalview/gui/StructureChooser.java (version 6a2daceff617cc8044a0464538b64fe9fca1d724)
  • Gitlab User

    Gitlab User 6915565a589f5ccd7d7d31478d18a036731b2e2c

    JAL-4673 JAL-4678 (passing) test to verify chains can be specified when importing structure file

    • test/jalview/gui/StructureChooserTest.java (version 6915565a589f5ccd7d7d31478d18a036731b2e2c)
    • src/jalview/gui/AssociatePdbFileWithSeq.java (version 6915565a589f5ccd7d7d31478d18a036731b2e2c)
  • Gitlab User

    Gitlab User 07fb19a1779e27334db300bea9553d4430451888

    JAL-4673 JAL-4678 allow chains to be specified when importing structure file

    • src/jalview/jbgui/GStructureChooser.java (version 07fb19a1779e27334db300bea9553d4430451888)
    • src/jalview/gui/StructureChooser.java (version 07fb19a1779e27334db300bea9553d4430451888)
    • src/jalview/gui/AssociatePdbFileWithSeq.java (version 07fb19a1779e27334db300bea9553d4430451888)
  • Gitlab User

    Gitlab User 55ffc4469223e863828cb8e55a11d5037b1e0faf

    JAL-4673 don't insert nulls to sequence ID when metadata not available

    • src/jalview/io/LayeredDBNParser.java (version 55ffc4469223e863828cb8e55a11d5037b1e0faf)
  • Gitlab User

    Gitlab User 13406aef0087d0cb5c1dfc396c6d8ce7085bdac4

    JAL-4677 fix a merge fail: send event to alignFrame only in one branch of conditional

    • src/jalview/io/FileLoader.java (version 13406aef0087d0cb5c1dfc396c6d8ce7085bdac4)
  • Gitlab User

    Gitlab User 591b80cf5a34e90becfbfc0a756c0cb15965859f

    JAL-4673 per-chain Jalview project plus 9CFN DNATCO cif + lbn

    • examples/testdata/9cfn_perchain_linked.jvp (version 591b80cf5a34e90becfbfc0a756c0cb15965859f)
    • examples/testdata/9CFN.lbn (version 591b80cf5a34e90becfbfc0a756c0cb15965859f)
    • examples/testdata/9CFN.cif (version 591b80cf5a34e90becfbfc0a756c0cb15965859f)