Jalview Git

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  Gitlab User 26 Aug 2024 0a00266f602cde16fddd1b297279cf9b2c13a708

  Merge branch 'develop' into features/JAL-3982_JAL-3860_mouseover_genome_to_3dstructure_for_2_11_4
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  Gitlab User 26 Aug 2024 88be27652649d3404aa05326e6a54fc221b65ab5 m

  Merge branch 'jims/JAL-4420_review_redo' into develop
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  Gitlab User 26 Aug 2024 85e30a861f26369f9be8cffa4a1345c79092a895 m

  JAL-4418 JAL-4420 is experimental feature

  • help/markdown/releases/release-2_11_4_0.md (version 85e30a861f26369f9be8cffa4a1345c79092a895) (diffs)
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  Gitlab User 26 Aug 2024 1b68541c7d4b464f8165ca3dbdc5916ef6cf8c19 m

  JAL-4420 new drag'n'drop behaviour is now an 'Experimental Feature'

  • src/jalview/gui/Desktop.java (version 1b68541c7d4b464f8165ca3dbdc5916ef6cf8c19) (diffs)
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  Gitlab User 26 Aug 2024 ee4305f7cad84f8c254c8709b9da8621a2f18872 m

  JAL-4420 report exceptions raised during a drop rather than swallowing them

  • src/jalview/gui/Desktop.java (version ee4305f7cad84f8c254c8709b9da8621a2f18872) (diffs)
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  Gitlab User 26 Aug 2024 6ce6f76a29779263ce810e0875b8050d25cbd0bb m

  JAL-4418 release notes for JAL-4398 and rejigged order a bit

  • help/markdown/releases/release-2_11_4_0.md (version 6ce6f76a29779263ce810e0875b8050d25cbd0bb) (diffs)
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  Gitlab User 26 Aug 2024 7e3271b6887c1674671dfc13725df09251177946 m

  Merge branch 'bug/JAL-4398_Window_menu_font_rendering' into develop
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  Gitlab User 23 Aug 2024 be1250ac8d031ee2501458377a6672b5dd4a4941 m

  Merge branch 'develop' into bug/JAL-4449_ensembl_sequence_retrieval_broken
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  Gitlab User 23 Aug 2024 ab788613300c36da80e7d37f946d699b19d562dd m

  JAL-4449 signed off and also updated Ensembl REST API version after fixing the EnsemblGene BRAF query test: JAL-3018

  • src/jalview/ext/ensembl/EnsemblRestClient.java (version ab788613300c36da80e7d37f946d699b19d562dd) (diffs)
  • test/jalview/ext/ensembl/EnsemblGeneTest.java (version ab788613300c36da80e7d37f946d699b19d562dd) (diffs)
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  Gitlab User 23 Aug 2024 a7218e71d8f55d564051673bc4ba8519315220aa m

  JAL-4418 JAL-3064 JAL-4111 release notes

  • help/markdown/releases/release-2_11_4_0.md (version a7218e71d8f55d564051673bc4ba8519315220aa) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 22 Aug 2024 d575022e7f98391bca61ec8e70d01b7b61d5efd5 m

  JAL-4449 Changed HttpUtils.followConnection(conn0) to return conn0 unused when there is not a redirect from http to https, otherwise to return a new unused connection directly to the new https URL

  • src/jalview/util/HttpUtils.java (version d575022e7f98391bca61ec8e70d01b7b61d5efd5) (diffs)
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  Gitlab User 22 Aug 2024 cec9228733938df22e2332849ce72dccaec3c89c m

  JAL-4418 JAL-4450 known issue for 2.11.4 and 2.11.3.3

  • help/markdown/releases/release-2_11_4_0.md (version cec9228733938df22e2332849ce72dccaec3c89c) (diffs)
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  Ben Soares <b.soares@dundee.ac.uk> 29 Apr 2024 8183ef1205ddc7ddc2aa40def6e81917c9c23940 m

  JAL-4398 Instantiate (static) JMenu windowMenu at the same time as the other (instance) JMenus for same context (FlatLaf?) settings

  • src/jalview/jbgui/GDesktop.java (version 8183ef1205ddc7ddc2aa40def6e81917c9c23940) (diffs)