Build: #9 was successful Child of JB-GDB580-26
JIRA issues
This page shows the JIRA issues that have been linked to this build. This includes issues specified in commit messages, labels or comments, as well as issues manually linked to this build.
| Type | Key | Summary | Status | Assignee | Fix versions | Related Builds | Operations |
|---|---|---|---|---|---|---|---|
|
|
JAL-789 | allow the alignment parameters and score matrix to be set for a pairwise sequence alignment | Open | James Procter | 2.12.0 | 10 related builds | |
|
|
JAL-3063 | Migrate from Castor to JAXB to enable Jalview project import/export in Jalview-js | Reopened | Mungo Carstairs | 2.11.0 | 2 related builds | |
|
|
JAL-3196 | Gradle build with install4j launchers | Closed | Ben Soares | 2.11.0 | 2 related builds | |
|
|
JAL-3384 | Redirect stdout and stderr to file when launched from getdown | Ready for testing | Ben Soares | 2 related builds | ||
|
|
JAL-3631 | Allow jalview auto-updates to download to and work from separate user-space directory | Closed | Ben Soares | 2.11.4.0 | 8 related builds | |
|
|
JAL-3830 | Add a command-line wrapper script to macOS bundle, linux and Windows installations (bash, powershell and .bat wrappers) | Closed | Ben Soares | 2.11.2, 2.11.2.0, 2.11.2.2, 2.11.3.0 | 2 related builds | |
|
|
JAL-3845 | Add error message when launched directly from Jalview Installer DMG volume | Ready for testing | Ben Soares | 2 related builds | ||
|
|
JAL-3987 | Consensus secondary structure annotation rows for sequences with multiple sources of structural data | In Progress | Renia Correya | 2.11.5.0 | 2 related builds | |
|
JAL-4072 | Could not obtain issue details from JIRA | |||||
|
|
JAL-4104 | Application ownership | Closed | Ben Soares | 2.11.4.0 | 4 related builds | |
|
|
JAL-4159 | PaSiMap inclusion | Closed | Thomas Morell | 2.11.4.0 | 12 related builds | |
|
|
JAL-4160 | New command line argument framework | Closed | Ben Soares | 2.11.3.0 | 2 related builds | |
|
|
JAL-4257 | allow adjustment of gap opening and extension for built in nw alignment | Closed | James Procter | 2.11.4.0 | 2 related builds | |
|
|
JAL-4358 | Getdown splash screen should disappear as soon as the Jalview Desktop is created/visible | Ready for testing | Ben Soares | 2.11.3_js | 2 related builds | |
|
|
JAL-4386 | Calculate tree using secondary structure annotation | In Progress | James Procter | 2.11.4.0, 2.11.5.0 | 9 related builds | |
|
|
JAL-4392 | Consensus secondary structure visualization for alignments | Closed | Renia Correya | 2.11.4.0 | 6 related builds | |
|
|
JAL-4409 | Implement in Jalview (and getdown for JVL) the use of specific scheme names for different channels (e.g. jalviewd://) | Reopened | Ben Soares | 2.11.4.0 | 2 related builds | |
|
|
JAL-4411 | Record source metadata in derived/transferred annotation rows | In Progress | Renia Correya | 2.11.4.0, 2.11.5.0 | 2 related builds | |
|
|
JAL-4414 | HTTP errors are often interpreted to the user as a file format error - and FileNotFound errors are not propagated from Web or Local file import | In Progress | Unassigned | 2.11.4.0, 2.11.4.1 | 10 related builds | |
|
|
JAL-4417 | jalview.bin.CommandsTest.headlessOrGuiImageOutputTest produces different images for --gui and --headless when using certain .jalview_properties | Closed | Ben Soares | 2.11.4.0 | 1 related build | |
|
|
JAL-4418 | Jalview 2.11.4.0 release | Being documented | James Procter | 2.11.4.0 | 38 related builds | |
|
|
JAL-4420 | Jalview could recognise .features, .annotations and .newick files belonging to an alignment file when all dragged-and-dropped onto it | In Progress | Ben Soares | 2.11.4.0, 2.11.5.0 | 9 related builds | |
|
|
JAL-4421 | Release installer DMG does not display the background image | Ready for testing | Ben Soares | 2.11.4, 2.12 | 8 related builds | |
|
|
JAL-4441 | optionally display source/provider for structure derived annotations along side the annotation label | Being documented | James Procter | 2 related builds |