Updates the Jalview Develop 2-12 builds at https://www.jalview.org/development/jalview_develop-2-12/
Build: #6 failed
Job: Default Job failed
Build log
The build generated 2,857 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log
| 03-Dec-2025 17:02:35 | J2S transpiling (767/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structure/StructureListener.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (768/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structure/StructureMapping.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (769/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structure/StructureMappingcommandSet.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (770/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structure/StructureSelectionManager.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (771/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structure/VamsasListener.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (772/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structure/VamsasSource.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (773/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structures/models/AAStructureBindingModel.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (774/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/structures/models/SequenceStructureBindingModel.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (775/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/CustomUrlProvider.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (776/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/IdOrgSettings.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (777/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/IdentifiersUrlProvider.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (778/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/UrlLinkDisplay.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (779/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/UrlLinkTableModel.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (780/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/UrlProvider.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (781/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/UrlProviderImpl.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (782/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/api/UrlProviderFactoryI.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (783/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/api/UrlProviderI.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (784/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/applet/AppletUrlProviderFactory.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (785/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/urls/desktop/DesktopUrlProviderFactory.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (786/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/AWTConsole.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (787/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ArgParserUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (788/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ArrayUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (789/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/BrowserLauncher.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (790/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/CaseInsensitiveString.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (791/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ChannelProperties.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (792/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ColorUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (793/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/Comparison.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (794/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/Constants.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (795/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/DBRefUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (796/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/DigestUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (797/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/DnaUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (798/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ErrorLog.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (799/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/FileUtils.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (800/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/Format.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (801/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/GroupUrlLink.java |
| 03-Dec-2025 17:02:35 | J2S transpiling (802/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/HMMProbabilityDistributionAnalyser.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (803/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/HttpUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (804/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ImageMaker.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (805/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/IntRangeComparator.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (806/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/JSONUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (807/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/LaunchUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (808/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/LinkedIdentityHashSet.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (809/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/Log4j.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (810/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/MapList.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (811/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/MapUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (812/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/MappingUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (813/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/MathUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (814/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/MessageManager.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (815/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/Pair.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (816/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ParseHtmlBodyAndLinks.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (817/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/Platform.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (818/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ProbabilityAnalyserKickstarter.java |
| 03-Dec-2025 17:02:36 | >>>main found for jalview.util.ProbabilityAnalyserKickstarter |
| 03-Dec-2025 17:02:36 | J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/jalview_util_ProbabilityAnalyserKickstarter.html |
| 03-Dec-2025 17:02:36 | J2S transpiling (819/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/QuickSort.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (820/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ReverseListIterator.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (821/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/SetUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (822/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ShiftList.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (823/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ShortcutKeyMaskExWrapper.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (824/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ShortcutKeyMaskExWrapper11.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (825/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ShortcutKeyMaskExWrapper8.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (826/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/ShortcutKeyMaskExWrapperI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (827/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/SparseCount.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (828/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/StringUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (829/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/TableSorter.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (830/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/UrlConstants.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (831/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/UrlLink.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (832/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/UserAgent.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (833/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/dialogrunner/DialogRunnerI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (834/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/imagemaker/BitmapImageSizing.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (835/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/jarInputStreamProvider.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (836/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/matcher/Condition.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (837/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/matcher/Matcher.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (838/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/util/matcher/MatcherI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (839/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/AlignmentViewport.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (840/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/OverviewDimensions.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (841/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/OverviewDimensionsHideHidden.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (842/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/OverviewDimensionsShowHidden.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (843/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/PCAModel.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (844/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/PaSiMapModel.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (845/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/ViewportListenerI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (846/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/ViewportProperties.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (847/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/ViewportRanges.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (848/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (849/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (850/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (851/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (852/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (853/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/viewmodel/styles/ViewStyle.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (854/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/AlignCalcManager2.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (855/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/AlignCalcWorker.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (856/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/AlignmentAnnotationFactory.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (857/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/AnnotationProviderI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (858/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/AnnotationWorker.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (859/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/ColumnCounterSetWorker.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (860/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/ComplementConsensusThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (861/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/ConsensusThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (862/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/ConservationThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (863/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/FeatureSetCounterI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (864/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/InformationThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (865/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/SecondaryStructureConsensusThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (866/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/workers/StrucConsensusThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (867/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/AWSThread.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (868/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/AWsJob.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (869/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/DBRefFetcher.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (870/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/HttpClientUtils.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (871/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/JobStateSummary.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (872/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/SequenceFetcher.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (873/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/ServiceChangeListener.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (874/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/WSClient.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (875/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/WSClientI.java |
| 03-Dec-2025 17:02:36 | J2S transpiling (876/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/WSDiscovererI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (877/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/WSMenuEntryProviderI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (878/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/CancellableI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (879/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/DistanceMatrixResultI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (880/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/JalviewServiceEndpointProviderI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (881/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/JalviewWebServiceI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (882/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/JobId.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (883/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/MsaI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (884/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/MsaResultI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (885/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/MsaWithGuideTreeI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (886/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/MultipleSequenceAlignmentI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (887/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/SequenceAnnotationServiceI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (888/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/ServiceWithParameters.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (889/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/TreeResultI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (890/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/UIinfo.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (891/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/api/WSAnnotationCalcManagerI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (892/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/datamodel/MappableContactMatrixI.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (893/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/datamodel/alphafold/MappableContactMatrix.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (894/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (895/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/EBIAlfaFold.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (896/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (897/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/EmblCdsSource.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (898/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/EmblFlatfileSource.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (899/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/EmblSource.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (900/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/EmblXmlSource.java |
| 03-Dec-2025 17:02:37 | J2S transpiling (901/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/GeneDbSource.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (902/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/Pdb.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (903/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/Pfam.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (904/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/PfamFull.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (905/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/PfamSeed.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (906/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/Rfam.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (907/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/RfamFull.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (908/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/RfamSeed.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (909/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/TDBeacons.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (910/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/Uniprot.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (911/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/UniprotName.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (912/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/dbsources/Xfam.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (913/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/ebi/EBIFetchClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (914/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/ebi/HmmerJSONProcessor.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (915/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/ebi/hmmerClient.java |
| 03-Dec-2025 17:02:38 | >>>main found for jalview.ws.ebi.hmmerClient |
| 03-Dec-2025 17:02:38 | J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/jalview_ws_ebi_hmmerClient.html |
| 03-Dec-2025 17:02:38 | J2S transpiling (916/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/gui/AnnotationWsJob.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (917/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/gui/MsaWSJob.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (918/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/gui/MsaWSThread.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (919/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/gui/WsJob.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (920/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/io/mime/HttpContentHandler.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (921/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/io/mime/JalviewMimeContentHandler.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (922/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/io/mime/MimeTypes.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (923/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/Annotate3D.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (924/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/Discoverer.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (925/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/JPredClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (926/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/JPredThread.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (927/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/JWS1Thread.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (928/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/MsaWSClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (929/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/MsaWSThread.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (930/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/SeqSearchWSClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (931/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/SeqSearchWSThread.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (932/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/WS1Client.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (933/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws1/WSJob.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (934/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/AWS2Thread.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (935/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/JWs2Job.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (936/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/JabaParamStore.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (937/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/JabaPreset.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (938/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/JabaWsParamTest.java |
| 03-Dec-2025 17:02:38 | >>>main found for jalview.ws.jws2.JabaWsParamTest |
| 03-Dec-2025 17:02:38 | J2S creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/jalview_ws_jws2_JabaWsParamTest.html |
| 03-Dec-2025 17:02:38 | J2S transpiling (939/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/JabaWsServerQuery.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (940/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/Jws2Client.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (941/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/Jws2ClientFactory.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (942/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/Jws2Discoverer.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (943/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/MsaWSClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (944/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/ParameterUtils.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (945/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/PreferredServiceChangeListener.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (946/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/PreferredServiceRegistry.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (947/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/SeqAnnotationServiceCalcWorker.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (948/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/SequenceAnnotationWSClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (949/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/dm/AAConSettings.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (950/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/dm/JabaOption.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (951/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/dm/JabaParameter.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (952/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/dm/JabaValueConstrain.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (953/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/dm/JabaWsParamSet.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (954/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/AAConClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (955/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/AADisorderClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (956/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/JabawsAnnotationInstance.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (957/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/JabawsMsaInstance.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (958/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/JabawsMsaInterfaceAlignCalcWorker.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (959/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/JabawsServiceInstance.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (960/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/Jws2Instance.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (961/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (962/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/jws2/jabaws2/RNAalifoldClient.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (963/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/ArgumentI.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (964/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/AutoCalcSetting.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (965/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/InvalidArgumentException.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (966/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/OptionI.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (967/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/ParamDatastoreI.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (968/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/ParamManager.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (969/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/ParameterI.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (970/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/ValueConstrainI.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (971/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/WsParamSetI.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (972/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/BooleanOption.java |
| 03-Dec-2025 17:02:38 | J2S transpiling (973/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/DoubleParameter.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (974/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/FileParameter.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (975/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/IntegerParameter.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (976/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/LogarithmicParameter.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (977/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/Option.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (978/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/RadioChoiceParameter.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (979/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/params/simple/StringParameter.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (980/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/AlignmentProcessor.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (981/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/HttpResultSet.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (982/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/InputType.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (983/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/NoValidInputDataException.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (984/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/RestClient.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (985/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/RestJob.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (986/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/RestJobThread.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (987/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/RestServiceDescription.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (988/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/clientdefs/ShmrRestClient.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (989/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/Alignment.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (990/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/AnnotationFile.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (991/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/JobConstant.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (992/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/SeqGroupIndexVector.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (993/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/SeqIdVector.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (994/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/SeqVector.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (995/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/rest/params/Tree.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (996/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/seqfetcher/ASequenceFetcher.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (997/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/seqfetcher/DbSourceProxy.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (998/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (999/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/sifts/MappingOutputPojo.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1000/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/sifts/SiftsClient.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1001/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/sifts/SiftsException.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1002/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/sifts/SiftsSettings.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1003/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/RNAalifoldServiceInstance.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1004/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/SlivkaAnnotationServiceInstance.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1005/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/SlivkaDatastore.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1006/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1007/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/SlivkaParamSet.java |
| 03-Dec-2025 17:02:39 | J2S transpiling (1008/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1009/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/slivkaws/SlivkaWSInstance.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1010/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/uimodel/AlignAnalysisUIText.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1011/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws/utils/UrlDownloadClient.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1012/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/BaseAction.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1013/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/BaseJob.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1014/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/BaseTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1015/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/NullAction.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1016/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/NullTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1017/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/PollingTaskExecutor.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1018/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/ServiceInputInvalidException.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1019/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/alignment/AlignmentAction.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1020/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/alignment/AlignmentJob.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1021/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/alignment/AlignmentProviderI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1022/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/alignment/AlignmentResult.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1023/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/alignment/AlignmentTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1024/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/annotation/AlignCalcWorkerAdapter.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1025/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/annotation/AnnotationAction.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1026/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/annotation/AnnotationJob.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1027/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/annotation/AnnotationProviderI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1028/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/annotation/AnnotationResult.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1029/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/annotation/AnnotationTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1030/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/api/ActionI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1031/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/api/JobI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1032/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/api/TaskEventListener.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1033/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/api/TaskI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1034/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/hmmer/PhmmerAction.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1035/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/hmmer/PhmmerTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1036/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredAction.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1037/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredMsaTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1038/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTask.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1039/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/actions/secstructpred/SecStructPredProvider.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1040/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/api/CredentialType.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1041/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/api/Credentials.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1042/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/api/JobStatus.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1043/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/api/WebService.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1044/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/api/WebServiceJobHandle.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1045/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/AbstractWebServiceDiscoverer.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1046/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/AlignmentWebServiceClientI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1047/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/AnnotationWebServiceClientI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1048/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/SecStructPredWebServiceClientI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1049/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/WebServiceClientI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1050/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/WebServiceDiscovererI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1051/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/api/WebServiceProviderI.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1052/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/ebi/JobDispatcherWSDiscoverer.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1053/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/ebi/ParamStores.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1054/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/ebi/PhmmerWSClient.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1055/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/jpred4/JPred4WSClient.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1056/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/jpred4/JPred4WSDiscoverer.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1057/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/slivka/SlivkaParamStoreFactory.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1058/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/slivka/SlivkaWSClient.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1059/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/client/slivka/SlivkaWSDiscoverer.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1060/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/gui/AlignmentServiceGuiHandler.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1061/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/gui/AnnotationServiceGuiHandler.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1062/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/gui/SearchServiceGuiHandler.java |
| 03-Dec-2025 17:02:40 | J2S transpiling (1063/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/gui/WebServicesMenuManager.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1064/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/helpers/DelegateJobEventListener.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1065/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/helpers/TaskEventSupport.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1066/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/helpers/WSClientTaskWrapper.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1067/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/params/ArgumentBean.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1068/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/params/ArgumentBeanList.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1069/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/params/SimpleParamDatastore.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1070/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/ws2/params/SimpleParamSet.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1071/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/embl/EntrySetType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1072/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/embl/EntryType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1073/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/embl/ObjectFactory.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1074/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/embl/ROOT.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1075/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/embl/XrefType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1076/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/AlcodonFrame.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1077/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/Annotation.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1078/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/AnnotationColourScheme.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1079/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/AnnotationElement.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1080/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/DoubleMatrix.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1081/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/DoubleVector.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1082/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/Feature.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1083/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/FeatureMatcher.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1084/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/FeatureMatcherSet.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1085/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/FilterBy.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1086/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/JalviewModel.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1087/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/JalviewUserColours.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1088/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/MapListType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1089/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/MapOnAMatrixType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1090/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/Mapping.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1091/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/MatrixType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1092/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/NoValueColour.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1093/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/ObjectFactory.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1094/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/PcaDataType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1095/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/Pdbentry.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1096/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/Property.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1097/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/Sequence.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1098/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/SequenceSet.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1099/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/SequenceType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1100/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/ThresholdType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1101/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/VAMSAS.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1102/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/WebServiceParameterSet.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1103/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/jalview/package-info.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1104/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/sifts/Alignment.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1105/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/sifts/EntityType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1106/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/sifts/Entry.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1107/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/sifts/ObjectFactory.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1108/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/sifts/package-info.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1109/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/CitationType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1110/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/CofactorType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1111/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/CommentType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1112/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ConsortiumType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1113/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/DbReferenceType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1114/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/Entry.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1115/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/EventType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1116/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/EvidenceType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1117/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/EvidencedStringType.java |
| 03-Dec-2025 17:02:41 | J2S transpiling (1118/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/FeatureType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1119/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/GeneLocationType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1120/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/GeneNameType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1121/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/GeneType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1122/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ImportedFromType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1123/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/InteractantType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1124/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/IsoformType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1125/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/KeywordType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1126/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/LocationType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1127/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/MoleculeType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1128/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/NameListType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1129/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ObjectFactory.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1130/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/OrganismNameType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1131/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/OrganismType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1132/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/PersonType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1133/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1134/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/PositionType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1135/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/PropertyType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1136/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ProteinExistenceType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1137/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ProteinType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1138/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ReactionType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1139/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/ReferenceType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1140/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/SequenceType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1141/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/SourceDataType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1142/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/SourceType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1143/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/StatusType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1144/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/SubcellularLocationType.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1145/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/Uniprot.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1146/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/jalview/xml/binding/uniprot/package-info.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1147/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/Assets.java |
| 03-Dec-2025 17:02:42 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/javajs |
| 03-Dec-2025 17:02:42 | J2S transpiling (1148/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/Async.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1149/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/AsyncColorChooser.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1150/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/AsyncDialog.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1151/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/AsyncFileChooser.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1152/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/AsyncSwingWorker.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1153/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/javajs/async/SwingJSUtils.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1154/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/AppletPDBCanvas.java |
| 03-Dec-2025 17:02:42 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/mc_view |
| 03-Dec-2025 17:02:42 | J2S transpiling (1155/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/AppletPDBViewer.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1156/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/Atom.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1157/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/Bond.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1158/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/MCMatrix.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1159/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/PDBCanvas.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1160/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/PDBChain.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1161/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/PDBfile.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1162/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/Residue.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1163/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/mc_view/Zsort.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1164/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/net/meyfa/sha256/Sha256.java |
| 03-Dec-2025 17:02:42 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/net to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/net |
| 03-Dec-2025 17:02:42 | J2S transpiling (1165/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/jibble/epsgraphics/EpsDocument.java |
| 03-Dec-2025 17:02:42 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/org |
| 03-Dec-2025 17:02:42 | J2S transpiling (1166/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/jibble/epsgraphics/EpsException.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1167/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/jibble/epsgraphics/EpsGraphics2D.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1168/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/CDL.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1169/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/Cookie.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1170/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/CookieList.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1171/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/HTTP.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1172/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/HTTPTokener.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1173/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONArray.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1174/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONException.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1175/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONML.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1176/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONObject.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1177/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONPointer.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1178/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONPointerException.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1179/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONPropertyIgnore.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1180/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONPropertyName.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1181/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONString.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1182/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONStringer.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1183/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONTokener.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1184/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/JSONWriter.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1185/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/Property.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1186/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/XML.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1187/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/XMLTokener.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1188/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/ItemList.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1189/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/JSONArray.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1190/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/JSONAware.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1191/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/JSONObject.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1192/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/JSONStreamAware.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1193/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/JSONValue.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1194/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/parser/ContainerFactory.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1195/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/parser/ContentHandler.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1196/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/parser/JSONParser.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1197/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/parser/ParseException.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1198/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/parser/Yylex.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1199/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/json/simple/parser/Yytoken.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1200/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/org/stackoverflowusers/file/WindowsShortcut.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1201/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/Interface.java |
| 03-Dec-2025 17:02:42 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/swingjs |
| 03-Dec-2025 17:02:42 | J2S transpiling (1202/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/JSFileHandler.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1203/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/JSUtilI.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1204/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/DOMNode.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1205/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/HTML5Applet.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1206/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/HTML5AudioContext.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1207/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/HTML5Canvas.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1208/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/HTML5CanvasContext2D.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1209/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/HTML5DataTransfer.java |
| 03-Dec-2025 17:02:42 | J2S transpiling (1210/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/HTML5Video.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1211/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/J2SInterface.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1212/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/JQuery.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1213/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/JQueryObject.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1214/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/JSFunction.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1215/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/swingjs/api/js/JSInterface.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1216/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/picr/model/CrossReference.java |
| 03-Dec-2025 17:02:43 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/uk |
| 03-Dec-2025 17:02:43 | J2S transpiling (1217/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/picr/model/CrossReference_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1218/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/picr/model/UPEntry.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1219/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/picr/model/UPEntry_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1220/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/Data.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1221/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/InputParams.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1222/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/WSFile.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1223/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/WSWUBlast.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1224/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/WSWUBlastService.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1225/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1226/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1227/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1228/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1229/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1230/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1231/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/IMsaWS.java |
| 03-Dec-2025 17:02:43 | j2s copying resources from /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/./build/jalviewjs/tmp/site_js/swingjs/j2s/vamsas |
| 03-Dec-2025 17:02:43 | J2S transpiling (1232/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Alignment.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1233/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Alignment_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1234/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/JpredResult.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1235/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/JpredResult_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1236/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/MsaResult.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1237/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/MsaResult_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1238/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Msfalignment.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1239/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Msfalignment_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1240/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Object.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1241/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Object_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1242/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Result.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1243/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Result_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1244/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Secstructpred.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1245/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Secstructpred_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1246/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/SeqSearchResult.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1247/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/SeqSearchResult_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1248/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Sequence.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1249/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/SequenceSet.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1250/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/SequenceSet_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1251/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/Sequence_Helper.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1252/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/WsJobId.java |
| 03-Dec-2025 17:02:43 | J2S transpiling (1253/1253) /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/src/vamsas/objects/simple/WsJobId_Helper.java |
| 03-Dec-2025 17:02:43 | J2S building JavaScript for 315 files |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AAFrequencyTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AlignSeqTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AlignmentAnnotationUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AlignmentGenerator.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AlignmentSorterTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AlignmentUtilsTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AnnotationSorterTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/AverageDistanceEngineTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/CodingUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/ConservationTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/CrossRefTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/DnaTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/FinderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/GeneticCodesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/GroupingTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/ParsePropertiesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/RnaTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/SeqsetUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/SequenceIdMatcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/TestAlignSeq.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/scoremodels/FeatureDistanceModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/scoremodels/PIDModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/scoremodels/ScoreMatrixTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/scoremodels/ScoreModelsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/analysis/scoremodels/SecondaryStructureDistanceModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/ArgsParserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/CacheTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/CommandLineOperations.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/CommandLineOperationsNG.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/CommandsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/CommandsTest2.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/HiDPISettingTest1.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/HiDPISettingTest2.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/JalviewLiteTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/MemorySettingTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/bin/argparser/ArgParserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/commands/EditCommandTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/commands/TrimRegionCommandTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/controller/AlignViewControllerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AlignedCodonFrameTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AlignedCodonIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AlignedCodonTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AlignmentAnnotationTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AlignmentTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AlignmentViewTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AllColsIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AllRowsIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/AnnotationTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/CigarArrayTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/ColumnSelectionTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/ConcurrentModificationTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/ContactMatrixTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/ContactRangeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/DBRefEntryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/HMMNodeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/HiddenColumnsCursorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/HiddenColumnsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/HiddenMarkovModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/HiddenSequencesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/MappedFeaturesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/MappingTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/MappingTypeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/MatchTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/PAEContactMatrixTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/PDBEntryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/RangeElementsIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/ResidueCountTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/SearchResultsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/SeqCigarTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/SequenceDummyTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/SequenceFeatureTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/SequenceGroupTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/SequenceTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/StartRegionIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/VisibleContigsIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/VisibleRowsIteratorTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/features/FeatureAttributesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/features/FeatureMatcherSetTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/features/FeatureMatcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/features/FeatureStoreTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/datamodel/features/SequenceFeaturesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/android/SparseDoubleArrayTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/android/SparseIntArrayTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/android/SparseShortArrayTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblCdnaTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblCdsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblGeneTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblGenomeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblProteinTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblRestClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblSeqProxyAdapter.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/EnsemblXrefTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/ensembl/SpeciesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/htsjdk/TestHtsContigDb.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/htsjdk/VCFReaderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/jmol/JmolCommandsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/jmol/JmolParserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/jmol/JmolViewerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/paradise/TestAnnotate3D.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/pymol/PymolCommandsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/pymol/PymolManagerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/rbvi/chimera/AllTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/rbvi/chimera/ChimeraConnect.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/rbvi/chimera/ChimeraXCommandsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/rbvi/chimera/JalviewChimeraView.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ext/so/SequenceOntologyTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/fts/core/FTSRestClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/fts/service/pdb/PDBFTSPanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/fts/service/pdb/PDBFTSRestClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/fts/threedbeacons/TDBeaconsFTSRestClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/fts/threedbeacons/TDBeaconsPanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AlignFrameTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AlignViewportTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AlignmentPanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AnnotationChooserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AnnotationColumnChooserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AnnotationLabelsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AnnotationLabelsTest2.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AnnotationPanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AnnotationRowFilterTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AppVarnaTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/AssociatePDBFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/CalculationChooserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/ColourMenuHelperTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/DesktopTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/FeatureSettingsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/FontChooserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/FreeUpMemoryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/HelpTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/JAL1353bugdemo.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/JvOptionPaneTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/JvSwingUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/MouseEventDemo.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/PaintRefresherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/PairwiseAlignmentPanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/PopupMenuTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/ProgressBarTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/QuitHandlerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/ScalePanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/SeqCanvasTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/SeqPanelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/SequenceFetcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/SequenceRendererTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/StructureChooserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/StructureViewerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySourceTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/hmmer/HMMERTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/AnnotatedPDBFileInputTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/AnnotationExporterTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/AnnotationFileIOTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/BSMLFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/BackupFilesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/BioJsHTMLOutputTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/ClustalFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/CrossRef2xmlTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/EmblFlatFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/FeaturesFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/FileFormatsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/FileIOTester.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/FileLoaderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/FormatAdapterTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/GenBankFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/HMMFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/HtmlFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/IdentifyFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/JSONFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/Jalview2xmlBase.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/JalviewExportPropertiesTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/JalviewFileChooserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/JalviewFileViewTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/NewickFileTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/PfamFormatInputTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/PhylipFileTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/RNAMLfileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/ScoreMatrixFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/SequenceAnnotationReportTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/StockholmFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/TCoffeeScoreFileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/WindowsFileLoadAndSaveTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/cache/AppCacheTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/cache/JvCacheableInputBoxTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/ExonerateHelperTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/Gff3HelperTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/GffHelperBaseTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/GffHelperFactoryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/GffTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/InterProScanHelperTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/gff/SequenceOntologyLiteTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/io/vcf/VCFLoaderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/math/MatrixTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/math/RotatableMatrixTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/math/SparseMatrixTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/project/Jalview2xmlTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/ContactGeometryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/OverviewRendererTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/OverviewResColourFinderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/ResidueColourFinderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/ResidueShaderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/ScaleRendererTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/seqfeatures/FeatureColourFinderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/renderer/seqfeatures/FeatureRendererTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/AnnotationColourGradientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/Blosum62ColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/BuriedColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/ClustalxColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/ColourSchemePropertyTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/ColourSchemesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/FeatureColourTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/HelixColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/HmmerGlobalBackgroundTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/HmmerLocalBackgroundTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/HydrophobicColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/JalviewColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/PIDColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/ResidueColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/ResiduePropertiesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/StrandColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/TurnColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/schemes/UserColourSchemeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structure/AtomSpecModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structure/AtomSpecTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structure/Mapping.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structure/StructureCommandTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structure/StructureMappingTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structure/StructureSelectionManagerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/structures/models/AAStructureBindingModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/testutils/AnnotationsMatcher.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/testutils/AnnotationsMatcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/testutils/Matchers.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/testutils/ScopeFunctions.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/testutils/SequenceStringMatcher.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/AppletUrlProviderFactoryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/CustomUrlProviderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/DesktopUrlProviderFactoryTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/IdentifiersUrlProviderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/UrlLinkDisplayTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/UrlLinkTableModelTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/urls/UrlProviderTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/ArrayUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/CaseInsensitiveStringTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/ColorUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/ComparisonTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/DBRefUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/DnaUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/FileUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/FormatTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/HMMProbabilityDistributionAnalyserTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/HttpUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/ImageMakerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/JSONUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/LaunchUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/Log4jTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/MapListTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/MappingUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/MathUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/MessageManagerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/ParseHtmlBodyAndLinksTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/PlatformTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/QuickSortTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/SetUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/ShiftListTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/SparseCountTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/StringUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/UrlLinkTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/dialogrunner/DialogRunnerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/imagemaker/BitmapImageSizeTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/matcher/ConditionTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/util/matcher/MatcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/viewmodel/OverviewDimensionsHideHiddenTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/viewmodel/OverviewDimensionsShowHiddenTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/viewmodel/ViewportRangesTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/viewmodel/styles/ViewStyleTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/workers/AlignCaclManager2Test.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/workers/AlignCalcManagerTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/PDBSequenceFetcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/SequenceFetcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/EBIAlphaFoldTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/EmblXmlSourceTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/PfamFullTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/PfamSeedTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/RemoteFormatTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/RfamFullTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/RfamSeedTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/UniprotTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/dbsources/XfamFetcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/ebi/EBIFetchClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/ebi/HmmerJSONProcessTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/gui/Jws2ParamView.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/jabaws/AAConAnnotAndSettingsIO.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/jabaws/DisorderAnnotExportImport.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/jabaws/MinJabawsClientTests.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/jabaws/RNAStructExportImport.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/jws2/ParameterUtilsTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/rest/RestClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/rest/ShmmrRSBSService.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/seqfetcher/DbRefFetcherTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/sifts/SiftsClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws/utils/UrlDownloadClientTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws2/actions/alignment/AlignmentActionTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws2/actions/annotation/AnnotationJobTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws2/actions/secstructpred/SecStructPredMsaTaskTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws2/actions/secstructpred/SecStructPredPDBSearchTaskTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/jalview/ws2/client/slivka/SlivkaWSDiscovererTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/junit/extensions/PA.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/junit/extensions/PrivilegedAccessor.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/mc_view/AtomTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/mc_view/BondTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/mc_view/PDBChainTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/mc_view/PDBfileTest.java |
| 03-Dec-2025 17:02:43 | J2S excluded /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/test/mc_view/ResidueTest.java |
| 03-Dec-2025 17:02:43 | J2S processed 1253 .java files, created 1285 .js files and 11 .html files, copied 7 resources |
| 03-Dec-2025 17:02:43 | J2S buildFinished 1253 files transpiled for /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1 |
| 03-Dec-2025 17:02:43 | J2S buildFinished nerror = 0 Wed Dec 03 17:02:43 GMT 2025 |
| 03-Dec-2025 17:02:43 | (Found 4 errors + 3202 warnings) Build done |
| 03-Dec-2025 17:02:43 | Invoking 'Gradle Project Builder' on '/jalview'. |
| 03-Dec-2025 17:02:44 | :jalviewjsTranspile (Thread[Execution worker for ':',5,main]) completed. Took 1 mins 30.662 secs. |
| 03-Dec-2025 17:02:44 | :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) started. |
| 03-Dec-2025 17:02:45 | |
| 03-Dec-2025 17:02:45 | > Task :jalviewjsCopyTransferSiteJs |
| 03-Dec-2025 17:02:45 | Caching disabled for task ':jalviewjsCopyTransferSiteJs' because: |
| 03-Dec-2025 17:02:45 | Build cache is disabled |
| 03-Dec-2025 17:02:45 | Task ':jalviewjsCopyTransferSiteJs' is not up-to-date because: |
| 03-Dec-2025 17:02:45 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site has been removed. |
| 03-Dec-2025 17:02:45 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site/com_stevesoft_pat_RegexWriter.html has been removed. |
| 03-Dec-2025 17:02:45 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site/jalview_bin_AppletParams.html has been removed. |
| 03-Dec-2025 17:02:45 | :jalviewjsCopyTransferSiteJs (Thread[Execution worker for ':',5,main]) completed. Took 0.233 secs. |
| 03-Dec-2025 17:02:45 | :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) started. |
| 03-Dec-2025 17:02:45 | |
| 03-Dec-2025 17:02:45 | > Task :jalviewjsTransferUnzipLib |
| 03-Dec-2025 17:02:45 | Caching disabled for task ':jalviewjsTransferUnzipLib' because: |
| 03-Dec-2025 17:02:45 | Build cache is disabled |
| 03-Dec-2025 17:02:45 | Task ':jalviewjsTransferUnzipLib' is not up-to-date because: |
| 03-Dec-2025 17:02:45 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_lib has been removed. |
| 03-Dec-2025 17:02:45 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_AlignmentDemo.html has been removed. |
| 03-Dec-2025 17:02:45 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_lib/fr_orsay_lri_varna_applications_fragseq_FragSeqGUI.html has been removed. |
| 03-Dec-2025 17:02:45 | :jalviewjsTransferUnzipLib (Thread[Execution worker for ':',5,main]) completed. Took 0.43 secs. |
| 03-Dec-2025 17:02:45 | :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) started. |
| 03-Dec-2025 17:02:46 | |
| 03-Dec-2025 17:02:46 | > Task :jalviewjsTransferUnzipSwingJs |
| 03-Dec-2025 17:02:46 | Caching disabled for task ':jalviewjsTransferUnzipSwingJs' because: |
| 03-Dec-2025 17:02:46 | Build cache is disabled |
| 03-Dec-2025 17:02:46 | Task ':jalviewjsTransferUnzipSwingJs' is not up-to-date because: |
| 03-Dec-2025 17:02:46 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_swingjs has been removed. |
| 03-Dec-2025 17:02:46 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_swingjs/___j2sflags.htm has been removed. |
| 03-Dec-2025 17:02:46 | Output property '$1' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_swingjs/debug.log has been removed. |
| 03-Dec-2025 17:02:46 | :jalviewjsTransferUnzipSwingJs (Thread[Execution worker for ':',5,main]) completed. Took 1.024 secs. |
| 03-Dec-2025 17:02:46 | :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) started. |
| 03-Dec-2025 17:02:46 | |
| 03-Dec-2025 17:02:46 | > Task :jalviewjsTransferUnzipAllLibs |
| 03-Dec-2025 17:02:46 | Skipping task ':jalviewjsTransferUnzipAllLibs' as it has no actions. |
| 03-Dec-2025 17:02:46 | :jalviewjsTransferUnzipAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 0.0 secs. |
| 03-Dec-2025 17:02:46 | :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) started. |
| 03-Dec-2025 17:02:48 | |
| 03-Dec-2025 17:02:48 | > Task :jalviewjsSyncAllLibs |
| 03-Dec-2025 17:02:48 | Caching disabled for task ':jalviewjsSyncAllLibs' because: |
| 03-Dec-2025 17:02:48 | Build cache is disabled |
| 03-Dec-2025 17:02:48 | Task ':jalviewjsSyncAllLibs' is not up-to-date because: |
| 03-Dec-2025 17:02:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Assets.js has changed. |
| 03-Dec-2025 17:02:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/Async.js has changed. |
| 03-Dec-2025 17:02:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site/swingjs/j2s/javajs/async/AsyncColorChooser.js has changed. |
| 03-Dec-2025 17:02:48 | :jalviewjsSyncAllLibs (Thread[Execution worker for ':',5,main]) completed. Took 1.199 secs. |
| 03-Dec-2025 17:02:48 | :copyResources (Thread[included builds,5,main]) started. |
| 03-Dec-2025 17:02:48 | |
| 03-Dec-2025 17:02:48 | > Task :copyResources UP-TO-DATE |
| 03-Dec-2025 17:02:48 | Caching disabled for task ':copyResources' because: |
| 03-Dec-2025 17:02:48 | Build cache is disabled |
| 03-Dec-2025 17:02:48 | Skipping task ':copyResources' as it is up-to-date. |
| 03-Dec-2025 17:02:48 | :copyResources (Thread[included builds,5,main]) completed. Took 0.003 secs. |
| 03-Dec-2025 17:02:48 | :createBuildProperties (Thread[included builds,5,main]) started. |
| 03-Dec-2025 17:02:48 | |
| 03-Dec-2025 17:02:48 | > Task :createBuildProperties |
| 03-Dec-2025 17:02:48 | Caching disabled for task ':createBuildProperties' because: |
| 03-Dec-2025 17:02:48 | Build cache is disabled |
| 03-Dec-2025 17:02:48 | Task ':createBuildProperties' is not up-to-date because: |
| 03-Dec-2025 17:02:48 | Value of input property 'comment' has changed for task ':createBuildProperties' |
| 03-Dec-2025 17:02:48 | Value of input property 'properties' has changed for task ':createBuildProperties' |
| 03-Dec-2025 17:02:48 | :createBuildProperties (Thread[included builds,5,main]) completed. Took 0.065 secs. |
| 03-Dec-2025 17:02:48 | :jalviewjsSyncBuildProperties (Thread[included builds,5,main]) started. |
| 03-Dec-2025 17:02:48 | |
| 03-Dec-2025 17:02:48 | > Task :jalviewjsSyncBuildProperties |
| 03-Dec-2025 17:02:48 | Caching disabled for task ':jalviewjsSyncBuildProperties' because: |
| 03-Dec-2025 17:02:48 | Build cache is disabled |
| 03-Dec-2025 17:02:48 | Task ':jalviewjsSyncBuildProperties' is not up-to-date because: |
| 03-Dec-2025 17:02:48 | Output property 'destinationDir' file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/site/swingjs/j2s/.build_properties has been removed. |
| 03-Dec-2025 17:02:48 | :jalviewjsSyncBuildProperties (Thread[included builds,5,main]) completed. Took 0.201 secs. |
| 03-Dec-2025 17:02:48 | :jalviewjsBuildAllCores (Thread[included builds,5,main]) started. |
| 03-Dec-2025 17:02:50 | |
| 03-Dec-2025 17:02:50 | > Task :jalviewjsBuildAllCores |
| 03-Dec-2025 17:02:50 | Execution optimizations have been disabled for task ':jalviewjsBuildAllCores' to ensure correctness due to the following reasons: |
| 03-Dec-2025 17:02:50 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build/jalviewjs/tmp/site_lib/swingjs/j2s'. Reason: Task ':jalviewjsBuildAllCores' uses this output of task ':jalviewjsTransferUnzipLib' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 03-Dec-2025 17:02:50 | Invalidating VFS because task ':jalviewjsBuildAllCores' failed validation |
| 03-Dec-2025 17:02:50 | Caching disabled for task ':jalviewjsBuildAllCores' because: |
| 03-Dec-2025 17:02:50 | Build cache is disabled |
| 03-Dec-2025 17:02:50 | Task ':jalviewjsBuildAllCores' is not up-to-date because: |
| 03-Dec-2025 17:02:50 | Incremental execution has been disabled to ensure correctness. Please consult deprecation warnings for more details. |
| 03-Dec-2025 17:02:50 | Creating core for stevesoft... |
| 03-Dec-2025 17:02:50 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.js |
| 03-Dec-2025 17:02:50 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.z.js |
| 03-Dec-2025 17:02:50 | |
| 03-Dec-2025 17:02:50 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.z.js' |
| 03-Dec-2025 17:02:50 | |
| 03-Dec-2025 17:02:50 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corestevesoft.z.js |
| 03-Dec-2025 17:02:50 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 03-Dec-2025 17:02:51 | -- |
| 03-Dec-2025 17:02:51 | Creating core for jvjmol... |
| 03-Dec-2025 17:02:51 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.js |
| 03-Dec-2025 17:02:51 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.z.js |
| 03-Dec-2025 17:02:51 | |
| 03-Dec-2025 17:02:51 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.z.js' |
| 03-Dec-2025 17:02:51 | |
| 03-Dec-2025 17:02:51 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejvjmol.z.js |
| 03-Dec-2025 17:02:51 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 03-Dec-2025 17:02:54 | -- |
| 03-Dec-2025 17:02:54 | Creating core for jalview... |
| 03-Dec-2025 17:02:54 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js |
| 03-Dec-2025 17:02:54 | Generating ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js |
| 03-Dec-2025 17:02:54 | |
| 03-Dec-2025 17:02:54 | Running '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js' |
| 03-Dec-2025 17:02:54 | |
| 03-Dec-2025 17:02:54 | Starting process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java''. Working directory: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1 Command: /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java -Xmx2g -Dfile.encoding=UTF-8 -Duser.country=GB -Duser.language=en -Duser.variant -cp /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/tools/closure_compiler.jar com.google.javascript.jscomp.CommandLineRunner --compilation_level SIMPLE_OPTIMIZATIONS --warning_level QUIET --charset UTF-8 --js ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js --js_output_file ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.z.js |
| 03-Dec-2025 17:02:54 | Successfully started process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' |
| 03-Dec-2025 17:02:56 | ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js:10508: ERROR - Parse error. missing ) after argument list |
| 03-Dec-2025 17:02:56 | }, 1); |
| 03-Dec-2025 17:02:56 | ^ |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | ./build/jalviewjs/tmp/site_core/swingjs/j2s/core/corejalview.js:10508: ERROR - Parse error. syntax error |
| 03-Dec-2025 17:02:56 | }, 1); |
| 03-Dec-2025 17:02:56 | ^ |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | 2 error(s), 0 warning(s) |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | > Task :jalviewjsBuildAllCores FAILED |
| 03-Dec-2025 17:02:56 | :jalviewjsBuildAllCores (Thread[included builds,5,main]) completed. Took 8.218 secs. |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | Execution optimizations have been disabled for 1 invalid unit(s) of work during this build to ensure correctness. |
| 03-Dec-2025 17:02:56 | Please consult deprecation warnings for more details. |
| 03-Dec-2025 17:02:56 | 18 actionable tasks: 16 executed, 2 up-to-date |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | FAILURE: Build failed with an exception. |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | * Where: |
| 03-Dec-2025 17:02:56 | Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDC330-JOB1/build.gradle' line: 3944 |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | * What went wrong: |
| 03-Dec-2025 17:02:56 | Execution failed for task ':jalviewjsBuildAllCores'. |
| 03-Dec-2025 17:02:56 | > Process 'command '/srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/bin/java'' finished with non-zero exit value 2 |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | * Try: |
| 03-Dec-2025 17:02:56 | > Run with --stacktrace option to get the stack trace. |
| 03-Dec-2025 17:02:56 | > Run with --debug option to get more log output. |
| 03-Dec-2025 17:02:56 | > Run with --scan to get full insights. |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | * Get more help at https://help.gradle.org |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | BUILD FAILED in 1m 57s |
| 03-Dec-2025 17:02:56 | |
| 03-Dec-2025 17:02:56 | Failing task since return code of [/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=DEVELOP-2-12 -PJAVA_VERSION=11 -Pjalviewjs_eclipse_root=~/buildtools/eclipse/latest -Pbamboo_planKey=JB-GDC330 --info eclipse jalviewjsCreateJ2sSettings jalviewjs] was 1 while expected 0 |
| 03-Dec-2025 17:02:56 | Finished task 'JalviewJS ${bamboo.CHANNEL} release' with result: Failed |
| 03-Dec-2025 17:02:56 | Running post build plugin 'NCover Results Collector' |
| 03-Dec-2025 17:02:56 | Running post build plugin 'Artifact Copier' |
| 03-Dec-2025 17:02:56 | Publishing an artifact: develop_channel_executable_jar |
| 03-Dec-2025 17:02:56 | Unable to publish artifact [develop_channel_executable_jar]: |
| 03-Dec-2025 17:02:56 | The artifact hasn't been successfully published after 2.778 ms |
| 03-Dec-2025 17:02:56 | Publishing an artifact: develop_jalview-js-site_tar |
| 03-Dec-2025 17:02:56 | Unable to publish artifact [develop_jalview-js-site_tar]: |
| 03-Dec-2025 17:02:56 | The artifact hasn't been successfully published after 2.202 ms |
| 03-Dec-2025 17:02:56 | Publishing an artifact: getdown_develop_channel_tar |
| 03-Dec-2025 17:02:56 | Unable to publish artifact [getdown_develop_channel_tar]: |
| 03-Dec-2025 17:02:56 | The artifact hasn't been successfully published after 4.451 ms |
| 03-Dec-2025 17:02:56 | Running post build plugin 'Artifactory Release Management Staging' |
| 03-Dec-2025 17:02:56 | Running post build plugin 'Artifactory Build Info Copier' |
| 03-Dec-2025 17:02:56 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 03-Dec-2025 17:02:56 | Running post build plugin 'npm Cache Cleanup' |
| 03-Dec-2025 17:02:56 | Running post build plugin 'Clover Results Collector' |
| 03-Dec-2025 17:02:56 | Running post build plugin 'Docker Container Cleanup' |
| 03-Dec-2025 17:02:56 | Finalising the build... |
| 03-Dec-2025 17:02:56 | Stopping timer. |
| 03-Dec-2025 17:02:56 | Build JB-GDC330-JOB1-6 completed. |
| 03-Dec-2025 17:02:56 | Running on server: post build plugin 'NCover Results Collector' |
| 03-Dec-2025 17:02:56 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 03-Dec-2025 17:02:56 | Running on server: post build plugin 'Clover Delta Calculator' |
| 03-Dec-2025 17:02:56 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 03-Dec-2025 17:02:56 | All post build plugins have finished |
| 03-Dec-2025 17:02:56 | Generating build results summary... |
| 03-Dec-2025 17:02:56 | Saving build results to disk... |
| 03-Dec-2025 17:02:56 | Logging substituted variables... |
| 03-Dec-2025 17:02:56 | Indexing build results... |
| 03-Dec-2025 17:02:56 | Finished building JB-GDC330-JOB1-6. |