Getdown DEVELOP Channel

Creates the getdown channel for the Jalview Development edition
None

JIRA Issues

This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.

JIRA Issues (20 issues)
Type Key Summary Status Assignee Fix versions Related Builds Last Built
Task JAL-4090 Release 2.11.3.0 Open James Procter 2.11.3.0 15 related builds Last built: 5 days ago
Epic JAL-1069 Standardised logging and GUI message reporting framework for all packages and platforms Open James Procter 2.11.0, 3.0 3 related builds Last built: 6 days ago
Task JAL-1551 Standard source code formatting and editing settings In Progress Mungo Carstairs 5 related builds Last built: 6 days ago
New Feature JAL-3855 Discover and import alphafold2 models and metadata from https://alphafold.ebi.ac.uk/ Closed James Procter 2.11.3.0, 2.11.3 7 related builds Last built: 6 days ago
New Feature JAL-3858 Import and display alphafold predicted alignment error matrices from JSON Being documented James Procter 2.11.3.0 6 related builds Last built: 6 days ago
New Feature JAL-4160 New command line argument framework Being tested James Procter 2.11.3.0 4 related builds Last built: 6 days ago
Improvement JAL-4195 sensible responses from the CLI when things go wrong during image export Reopened Unassigned 2.11.3.1 4 related builds Last built: 6 days ago
Bug JAL-4217 2.11.3 develop build hanging in tests.. Reopened James Procter 2.11.3.0 7 related builds Last built: 6 days ago
Improvement JAL-4250 Secondary Structure annotation is clunkily pixellated on HiDPI screens Closed Ben Soares 2.11.3.0 1 related build Last built: 6 days ago
Improvement JAL-4262 Deprecation warning when pre 2.11.3.0 CLI arguments are processed Closed Ben Soares 2.11.3.0 5 related builds Last built: 6 days ago
Improvement JAL-4265 Command line option allowing the background colour for a structure view to be configured Closed Ben Soares 2.11.3.0 9 related builds Last built: 6 days ago
New Feature JAL-4267 Allow injection of custom structure viewer script when viewing 3D data from Jalview Open James Procter 2.12.0 3 related builds Last built: 6 days ago
Improvement JAL-4269 Reduce number of specific variants of common sub-value parameters in next generation command line interface Closed Ben Soares 2.11.3.0 3 related builds Last built: 6 days ago
New Feature JAL-4274 Configurable bitmap export preferences for height, width and scale factor Ready for testing Ben Soares 2.11.3.0 6 related builds Last built: 6 days ago
Bug JAL-4277 {dirname} substitution always substitutes the absolute dirname Being tested James Procter 2.11.3.0 4 related builds Last built: 6 days ago
Bug JAL-4284 --image and --structureimage should require --overwrite if file exists Ready for testing Ben Soares 2.11.3.0 1 related build Last built: 6 days ago
Improvement JAL-4285 User should be able to see a collected list of warnings/errors after a batch open. Being tested James Procter 2.11.3.0 3 related builds Last built: 6 days ago
Improvement JAL-4286 Allow command line / programmatic export of images from external structure viewers Open James Procter 2.12.0 7 related builds Last built: 6 days ago
Improvement JAL-4287 Automatically discover and import alphaFold or best PDBe model when retrieving proteins from Uniprot Open James Procter 1 related build Last built: 6 days ago
New Feature JAL-629 create sequence/structure associations and add associated data via command line Closed Ben Soares 2.11.3.0, 2.11.3 12 related builds Last built: 6 days ago
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