Build #1

Run tests with clover, can be customised to run e.g. Memory tests. This plan should normally be disabled.

Build: #1 was successful

Job: Clover and Tests Customised was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 140 lines of output. Download or view full build log

13-Aug-2020 12:04:01 Build Jalview Builds - Gradle Develop Build Customised - Clover and Tests #1 (JB-GDBC-JOB1-1) started building on agent Default Agent
13-Aug-2020 12:04:01
13-Aug-2020 12:04:01 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1
13-Aug-2020 12:04:01 Executing build Jalview Builds - Gradle Develop Build Customised - Clover and Tests #1 (JB-GDBC-JOB1-1)
13-Aug-2020 12:04:01 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
13-Aug-2020 12:04:01 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1
13-Aug-2020 12:04:01 Updating source code to revision: 339d1bf247a3b0d000044892bee3d5668a8d9b11
13-Aug-2020 12:04:01 Fetching 'refs/heads/develop' from 'http://source.jalview.org/git/jalview.git'.
13-Aug-2020 12:04:01 Checking out revision 339d1bf247a3b0d000044892bee3d5668a8d9b11.
13-Aug-2020 12:04:01 Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1/.git'.
13-Aug-2020 12:04:01 Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1'...
13-Aug-2020 12:04:01 done.
13-Aug-2020 12:04:08 Switched to a new branch 'develop'
13-Aug-2020 12:04:08 Branch develop set up to track remote branch develop from origin.
13-Aug-2020 12:04:08 Updated source code to revision: 339d1bf247a3b0d000044892bee3d5668a8d9b11
13-Aug-2020 12:04:08 Finished task 'Checkout Default Repository' with result: Success
13-Aug-2020 12:04:08 Running pre-build action: VCS Version Collector
13-Aug-2020 12:04:08 Running pre-build action: Artifactory Release Staging
13-Aug-2020 12:04:08 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
13-Aug-2020 12:04:08 Bamboo Artifactory Plugin version: 2.6.2
13-Aug-2020 12:04:08
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build Customised - Clover and Tests #1 (JB-GDBC-JOB1-1)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo cleanTest test
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1
... using extra environment variables:
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bamboo_repository_revision_number=339d1bf247a3b0d000044892bee3d5668a8d9b11
bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDBC-JOB1-1
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bamboo_shortJobName=Clover and Tests
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13-Aug-2020 12:04:08 11527
13-Aug-2020 12:04:09
13-Aug-2020 12:04:09 > Configure project :
13-Aug-2020 12:04:09 HEADLESS BUILD
13-Aug-2020 12:04:09 J2S ENABLED
13-Aug-2020 12:04:09 Using a LOCAL profile.
13-Aug-2020 12:04:09 eclipseDir exists
13-Aug-2020 12:04:09
13-Aug-2020 12:04:09 > Task :cleanClover
13-Aug-2020 12:04:09 > Task :cleanTest UP-TO-DATE
13-Aug-2020 12:04:11
13-Aug-2020 12:04:11 > Task :cloverInstrJava
13-Aug-2020 12:04:11 Clover: About to instrument 1021 files
13-Aug-2020 12:04:11 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
13-Aug-2020 12:04:11 Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1/build/clover/clover.db'.
13-Aug-2020 12:04:11 Processing files at 1.9 source level.
13-Aug-2020 12:04:20 Clover all over. Instrumented 1021 files (100 packages).
13-Aug-2020 12:04:22
13-Aug-2020 12:04:22 > Task :cloverInstrTests
13-Aug-2020 12:04:22 Clover: About to instrument test files
13-Aug-2020 12:04:22 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
13-Aug-2020 12:04:22 Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1/build/clover/clover.db'.
13-Aug-2020 12:04:22 Processing files at 1.9 source level.
13-Aug-2020 12:04:24 Clover all over. Instrumented 260 files (48 packages).
13-Aug-2020 12:04:24 1432 test methods detected.
13-Aug-2020 12:04:25
13-Aug-2020 12:04:25 > Task :cloverInstr
13-Aug-2020 12:04:27
13-Aug-2020 12:04:27 > Task :compileCloverJava
13-Aug-2020 12:04:27 Setting target compatibility to 11
13-Aug-2020 12:04:38 Note: Some input files use or override a deprecated API.
13-Aug-2020 12:04:38 Note: Recompile with -Xlint:deprecation for details.
13-Aug-2020 12:04:38 Note: Some input files use unchecked or unsafe operations.
13-Aug-2020 12:04:38 Note: Recompile with -Xlint:unchecked for details.
13-Aug-2020 12:04:44
13-Aug-2020 12:04:44 > Task :processCloverResources
13-Aug-2020 12:04:44 > Task :cloverClasses
13-Aug-2020 12:04:44 > Task :copyHelp
13-Aug-2020 12:04:44 > Task :cleanBuildingHTML
13-Aug-2020 12:04:44 > Task :convertMdFiles
13-Aug-2020 12:04:44 > Task :syncDocs
13-Aug-2020 12:04:44 > Task :createBuildProperties
13-Aug-2020 12:04:44 > Task :syncResources
13-Aug-2020 12:04:44 > Task :prepare
13-Aug-2020 12:04:46
13-Aug-2020 12:04:46 > Task :compileTestJava
13-Aug-2020 12:04:46 Setting target compatibility to 11
13-Aug-2020 12:04:50 Note: Some input files use or override a deprecated API.
13-Aug-2020 12:04:50 Note: Recompile with -Xlint:deprecation for details.
13-Aug-2020 12:04:50 Note: Some input files use unchecked or unsafe operations.
13-Aug-2020 12:04:50 Note: Recompile with -Xlint:unchecked for details.
13-Aug-2020 12:04:50
13-Aug-2020 12:04:50 > Task :processTestResources
13-Aug-2020 12:04:50 > Task :testClasses
13-Aug-2020 12:04:52
13-Aug-2020 12:04:52 > Task :test
13-Aug-2020 12:04:52 Running tests WITH clover
13-Aug-2020 12:06:41
13-Aug-2020 12:06:41 BUILD SUCCESSFUL in 2m 32s
13-Aug-2020 12:06:41 15 actionable tasks: 14 executed, 1 up-to-date
13-Aug-2020 12:06:41 Finished task 'Run tests with openclover under gradle' with result: Success
13-Aug-2020 12:06:41 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
13-Aug-2020 12:06:41 Bamboo Artifactory Plugin version: 2.6.2
13-Aug-2020 12:06:41
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build Customised - Clover and Tests #1 (JB-GDBC-JOB1-1)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1
... using extra environment variables:
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bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr
CATALINA_PID=/home/bamboo/latest/work/bamboo.pid
bamboo_planRepository_1_branchDisplayName=develop
bamboo_repository_revision_number=339d1bf247a3b0d000044892bee3d5668a8d9b11
bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDBC-JOB1-1
JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048
bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1
bamboo_planRepository_1_name=Jalview Git
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bamboo_repository_24707203_revision_number=339d1bf247a3b0d000044892bee3d5668a8d9b11
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bamboo_shortJobName=Clover and Tests
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bamboo_repository_24707203_branch_name=develop
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13-Aug-2020 12:06:41 11527
13-Aug-2020 12:06:42 WARNING: An illegal reflective access operation has occurred
13-Aug-2020 12:06:42 WARNING: Illegal reflective access by org.codehaus.groovy.vmplugin.v7.Java7$1 (file:/srv/bamboo/home/bamboo/buildtools/gradle-5.6.4/lib/groovy-all-1.3-2.5.4.jar) to constructor java.lang.invoke.MethodHandles$Lookup(java.lang.Class,int)
13-Aug-2020 12:06:42 WARNING: Please consider reporting this to the maintainers of org.codehaus.groovy.vmplugin.v7.Java7$1
13-Aug-2020 12:06:42 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
13-Aug-2020 12:06:42 WARNING: All illegal access operations will be denied in a future release
13-Aug-2020 12:06:45
13-Aug-2020 12:06:45 > Configure project :
13-Aug-2020 12:06:45 HEADLESS BUILD
13-Aug-2020 12:06:45 J2S ENABLED
13-Aug-2020 12:06:45 Using a LOCAL profile.
13-Aug-2020 12:06:46 eclipseDir exists
13-Aug-2020 12:06:48
13-Aug-2020 12:06:48 > Task :cloverHtmlReport
13-Aug-2020 12:06:48 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
13-Aug-2020 12:06:49 Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1/build/reports/clover'
13-Aug-2020 12:07:16 Done. Processed 103 packages in 27045ms (262ms per package).
13-Aug-2020 12:07:20
13-Aug-2020 12:07:20 > Task :cloverXmlReport
13-Aug-2020 12:07:20 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
13-Aug-2020 12:07:20 Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1/build/reports/clover/clover.xml'
13-Aug-2020 12:07:20
13-Aug-2020 12:07:20 > Task :cloverReport
13-Aug-2020 12:07:20
13-Aug-2020 12:07:20 BUILD SUCCESSFUL in 39s
13-Aug-2020 12:07:20 2 actionable tasks: 2 executed
13-Aug-2020 12:07:20 Finished task 'Clover Report' with result: Success
13-Aug-2020 12:07:20 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
13-Aug-2020 12:07:20 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBC-JOB1...
13-Aug-2020 12:07:20 Finished task 'TestNG Parser' with result: Success
13-Aug-2020 12:07:20 Running post build plugin 'NCover Results Collector'
13-Aug-2020 12:07:20 Running post build plugin 'Artifact Copier'
13-Aug-2020 12:07:20 Publishing an artifact: Clover Report (System)
13-Aug-2020 12:07:22 Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 1.490 s
13-Aug-2020 12:07:22 Publishing an artifact: TestNG report
13-Aug-2020 12:07:22 Finished publishing of artifact Job artifact: [TestNG report], pattern: [**/*] anchored at: [build/reports/tests/test] in 92.28 ms
13-Aug-2020 12:07:22 Running post build plugin 'Artifactory Release Management Staging'
13-Aug-2020 12:07:22 Running post build plugin 'Artifactory Build Info Copier'
13-Aug-2020 12:07:22 Running post build plugin 'Artifactory Gradle Properties Info Copier'
13-Aug-2020 12:07:22 Running post build plugin 'npm Cache Cleanup'
13-Aug-2020 12:07:22 Running post build plugin 'Clover Results Collector'
13-Aug-2020 12:07:22 Running post build plugin 'Docker Container Cleanup'
13-Aug-2020 12:07:22 Finalising the build...
13-Aug-2020 12:07:22 Stopping timer.
13-Aug-2020 12:07:22 Build JB-GDBC-JOB1-1 completed.
13-Aug-2020 12:07:22 Running on server: post build plugin 'NCover Results Collector'
13-Aug-2020 12:07:22 Running on server: post build plugin 'Build Hanging Detection Configuration'
13-Aug-2020 12:07:22 Running on server: post build plugin 'Clover Delta Calculator'
13-Aug-2020 12:07:22 Running on server: post build plugin 'Maven Dependencies Postprocessor'
13-Aug-2020 12:07:22 All post build plugins have finished
13-Aug-2020 12:07:22 Generating build results summary...
13-Aug-2020 12:07:22 Saving build results to disk...
13-Aug-2020 12:07:22 Logging substituted variables...
13-Aug-2020 12:07:22 Indexing build results...
13-Aug-2020 12:07:22 Finished building JB-GDBC-JOB1-1.