Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AtomSpecTest	9	62	10	0.00%	Show methods

Class AtomSpecTest

Class AtomSpecTest	Line # 9	Total Statements 62	Complexity 10	TOTAL Coverage 0.00%
testFromChimeraAtomSpec() : void   testFromChimeraAtomSpec() : void	1111	31.031	5.05	0.0 0.00%
testFromChimeraXAtomSpec() : void   testFromChimeraXAtomSpec() : void	7575	31.031	5.05	0.0 0.00%

 

Contributing tests

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1		package jalview.structure;
2
3		import static org.testng.Assert.assertEquals;
4		import static org.testng.Assert.assertNull;
5		import static org.testng.Assert.fail;
6
7		import org.testng.annotations.Test;
8
		0% Uncovered Elements: 64 (64) Complexity: 10 Complexity Density: 0.16
9		public class AtomSpecTest
10		{
		0% Uncovered Elements: 31 (31) Complexity: 5 Complexity Density: 0.16 4-
11	0	@Test...
12		public void testFromChimeraAtomSpec()
13		{
14	0	AtomSpec as = AtomSpec.fromChimeraAtomspec("#1:12.B");
15	0	assertEquals(as.getModelNumber(), 1);
16	0	assertEquals(as.getPdbResNum(), 12);
17	0	assertEquals(as.getChain(), "B");
18	0	assertNull(as.getPdbFile());
19
20		// no model - default to zero
21	0	as = AtomSpec.fromChimeraAtomspec(":13.C");
22	0	assertEquals(as.getModelNumber(), 0);
23	0	assertEquals(as.getPdbResNum(), 13);
24	0	assertEquals(as.getChain(), "C");
25	0	assertNull(as.getPdbFile());
26
27		// model.submodel
28	0	as = AtomSpec.fromChimeraAtomspec("#3.2:15");
29	0	assertEquals(as.getModelNumber(), 3);
30	0	assertEquals(as.getPdbResNum(), 15);
31	0	assertEquals(as.getChain(), "");
32	0	assertNull(as.getPdbFile());
33
34	0	String spec = "3:12.B";
35	0	try
36		{
37	0	as = AtomSpec.fromChimeraAtomspec(spec);
38	0	fail("Expected exception for " + spec);
39		} catch (IllegalArgumentException e)
40		{
41		// ok
42		}
43
44	0	spec = "#3:12-14.B";
45	0	try
46		{
47	0	as = AtomSpec.fromChimeraAtomspec(spec);
48	0	fail("Expected exception for " + spec);
49		} catch (IllegalArgumentException e)
50		{
51		// ok
52		}
53
54	0	spec = "";
55	0	try
56		{
57	0	as = AtomSpec.fromChimeraAtomspec(spec);
58	0	fail("Expected exception for " + spec);
59		} catch (IllegalArgumentException e)
60		{
61		// ok
62		}
63
64	0	spec = null;
65	0	try
66		{
67	0	as = AtomSpec.fromChimeraAtomspec(spec);
68	0	fail("Expected exception for " + spec);
69		} catch (NullPointerException e)
70		{
71		// ok
72		}
73		}
74
		0% Uncovered Elements: 31 (31) Complexity: 5 Complexity Density: 0.16 4-
75	0	@Test...
76		public void testFromChimeraXAtomSpec()
77		{
78	0	AtomSpec as = AtomSpec.fromChimeraXAtomspec("#1/B:12");
79	0	assertEquals(as.getModelNumber(), 1);
80	0	assertEquals(as.getPdbResNum(), 12);
81	0	assertEquals(as.getChain(), "B");
82	0	assertNull(as.getPdbFile());
83
84		// no model - default to zero
85	0	as = AtomSpec.fromChimeraXAtomspec("/C:13");
86	0	assertEquals(as.getModelNumber(), 0);
87	0	assertEquals(as.getPdbResNum(), 13);
88	0	assertEquals(as.getChain(), "C");
89	0	assertNull(as.getPdbFile());
90
91		// model.submodel
92	0	as = AtomSpec.fromChimeraXAtomspec("#3.2/:15");
93	0	assertEquals(as.getModelNumber(), 3);
94	0	assertEquals(as.getPdbResNum(), 15);
95	0	assertEquals(as.getChain(), "");
96	0	assertNull(as.getPdbFile());
97
98	0	String spec = "3:12.B";
99	0	try
100		{
101	0	as = AtomSpec.fromChimeraXAtomspec(spec);
102	0	fail("Expected exception for " + spec);
103		} catch (IllegalArgumentException e)
104		{
105		// ok
106		}
107
108	0	spec = "#3:12-14.B";
109	0	try
110		{
111	0	as = AtomSpec.fromChimeraXAtomspec(spec);
112	0	fail("Expected exception for " + spec);
113		} catch (IllegalArgumentException e)
114		{
115		// ok
116		}
117
118	0	spec = "";
119	0	try
120		{
121	0	as = AtomSpec.fromChimeraXAtomspec(spec);
122	0	fail("Expected exception for " + spec);
123		} catch (IllegalArgumentException e)
124		{
125		// ok
126		}
127
128	0	spec = null;
129	0	try
130		{
131	0	as = AtomSpec.fromChimeraXAtomspec(spec);
132	0	fail("Expected exception for " + spec);
133		} catch (NullPointerException e)
134		{
135		// ok
136		}
137		}
138		}