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package jalview.jbgui; |
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import jalview.util.ImageMaker.TYPE; |
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import jalview.util.MessageManager; |
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import java.awt.BorderLayout; |
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import java.awt.Color; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.ActionListener; |
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import javax.swing.JCheckBoxMenuItem; |
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import javax.swing.JInternalFrame; |
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import javax.swing.JMenu; |
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import javax.swing.JMenuBar; |
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import javax.swing.JMenuItem; |
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import javax.swing.JScrollPane; |
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import javax.swing.event.MenuEvent; |
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import javax.swing.event.MenuListener; |
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@SuppressWarnings("serial") |
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| 58% |
Uncovered Elements: 42 (100) |
Complexity: 31 |
Complexity Density: 0.44 |
|
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public class GTreePanel extends JInternalFrame |
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{ |
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BorderLayout borderLayout1 = new BorderLayout(); |
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public JScrollPane scrollPane = new JScrollPane(); |
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JMenuBar jMenuBar1 = new JMenuBar(); |
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JMenu fileMenu = new JMenu(); |
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JMenuItem saveAsNewick = new JMenuItem(); |
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JMenuItem printMenu = new JMenuItem(); |
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protected JMenu viewMenu = new JMenu(); |
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public JMenuItem font = new JMenuItem(); |
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public JMenuItem sortAssocViews = new JMenuItem(); |
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public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem(); |
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public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem(); |
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public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem(); |
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public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem(); |
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JMenuItem pngTree = new JMenuItem(); |
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JMenuItem epsTree = new JMenuItem(); |
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JMenu saveAsMenu = new JMenu(); |
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JMenuItem textbox = new JMenuItem(); |
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public JMenuItem originalSeqData = new JMenuItem(); |
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protected JMenu associateLeavesMenu = new JMenu(); |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
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public GTreePanel()... |
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{ |
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try |
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{ |
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jbInit(); |
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this.setJMenuBar(jMenuBar1); |
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} catch (Exception e) |
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{ |
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e.printStackTrace(); |
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} |
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} |
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| 100% |
Uncovered Elements: 0 (53) |
Complexity: 1 |
Complexity Density: 0.02 |
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private void jbInit() throws Exception... |
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{ |
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setName("jalview-tree"); |
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this.getContentPane().setLayout(borderLayout1); |
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this.setBackground(Color.white); |
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this.setFont(new java.awt.Font("Verdana", 0, 12)); |
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scrollPane.setOpaque(false); |
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fileMenu.setText(MessageManager.getString("action.file")); |
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saveAsNewick.setText(MessageManager.getString("label.newick_format")); |
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saveAsNewick.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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saveAsNewick_actionPerformed(e); |
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} |
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}); |
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printMenu.setText(MessageManager.getString("action.print")); |
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printMenu.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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printMenu_actionPerformed(e); |
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} |
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}); |
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viewMenu.setText(MessageManager.getString("action.view")); |
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viewMenu.addMenuListener(new MenuListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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0 |
@Override... |
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public void menuSelected(MenuEvent e) |
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{ |
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viewMenu_menuSelected(); |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
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@Override... |
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public void menuDeselected(MenuEvent e) |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
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@Override... |
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public void menuCanceled(MenuEvent e) |
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{ |
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} |
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}); |
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sortAssocViews.setText( |
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MessageManager.getString("label.sort_alignment_by_tree")); |
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sortAssocViews.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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sortByTree_actionPerformed(); |
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} |
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}); |
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font.setText(MessageManager.getString("action.font")); |
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font.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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font_actionPerformed(e); |
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} |
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}); |
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bootstrapMenu.setText( |
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MessageManager.getString("label.show_bootstrap_values")); |
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bootstrapMenu.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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bootstrapMenu_actionPerformed(e); |
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} |
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}); |
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distanceMenu.setText(MessageManager.getString("label.show_distances")); |
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distanceMenu.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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distanceMenu_actionPerformed(e); |
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} |
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}); |
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fitToWindow.setSelected(true); |
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fitToWindow.setText(MessageManager.getString("label.fit_to_window")); |
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fitToWindow.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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fitToWindow_actionPerformed(e); |
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} |
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}); |
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epsTree.setText("EPS"); |
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epsTree.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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writeTreeImage(TYPE.EPS); |
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} |
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}); |
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pngTree.setText("PNG"); |
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pngTree.addActionListener(new java.awt.event.ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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writeTreeImage(TYPE.PNG); |
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} |
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}); |
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saveAsMenu.setText(MessageManager.getString("action.save_as")); |
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placeholdersMenu.setToolTipText(MessageManager.getString( |
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"label.marks_leaves_tree_not_associated_with_sequence")); |
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placeholdersMenu.setText( |
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MessageManager.getString("label.mark_unlinked_leaves")); |
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placeholdersMenu.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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placeholdersMenu_actionPerformed(e); |
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} |
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}); |
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textbox.setText(MessageManager.getString("label.out_to_textbox")); |
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textbox.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
220 |
0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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textbox_actionPerformed(e); |
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} |
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}); |
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originalSeqData.setText(MessageManager.getString("label.input_data")); |
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originalSeqData.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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229 |
0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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originalSeqData_actionPerformed(e); |
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} |
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}); |
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associateLeavesMenu.setText( |
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MessageManager.getString("label.associate_leaves_with")); |
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this.getContentPane().add(scrollPane, BorderLayout.CENTER); |
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jMenuBar1.add(fileMenu); |
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jMenuBar1.add(viewMenu); |
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fileMenu.add(saveAsMenu); |
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fileMenu.add(textbox); |
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fileMenu.add(printMenu); |
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fileMenu.add(originalSeqData); |
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viewMenu.add(fitToWindow); |
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viewMenu.add(font); |
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viewMenu.add(distanceMenu); |
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viewMenu.add(bootstrapMenu); |
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viewMenu.add(placeholdersMenu); |
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viewMenu.add(sortAssocViews); |
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viewMenu.add(associateLeavesMenu); |
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saveAsMenu.add(saveAsNewick); |
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saveAsMenu.add(epsTree); |
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saveAsMenu.add(pngTree); |
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} |
255 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
256 |
0 |
public void printMenu_actionPerformed(ActionEvent e)... |
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{ |
258 |
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} |
259 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
260 |
0 |
public void font_actionPerformed(ActionEvent e)... |
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{ |
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} |
263 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
264 |
0 |
public void distanceMenu_actionPerformed(ActionEvent e)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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0 |
public void bootstrapMenu_actionPerformed(ActionEvent e)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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0 |
public void fitToWindow_actionPerformed(ActionEvent e)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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public void writeTreeImage(TYPE imageType)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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public void saveAsNewick_actionPerformed(ActionEvent e)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
284 |
0 |
public void placeholdersMenu_actionPerformed(ActionEvent e)... |
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{ |
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} |
287 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
288 |
0 |
public void textbox_actionPerformed(ActionEvent e)... |
289 |
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{ |
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} |
291 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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0 |
public void fullid_actionPerformed(ActionEvent e)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
297 |
0 |
public void originalSeqData_actionPerformed(ActionEvent e)... |
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{ |
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} |
301 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
302 |
0 |
public void viewMenu_menuSelected()... |
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{ |
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} |
305 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
306 |
0 |
public void sortByTree_actionPerformed()... |
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{ |
308 |
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} |
310 |
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} |