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Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST
  2. Package jalview.jbgui

File GDesktop.java

 

Coverage histogram

../../img/srcFileCovDistChart6.png
33% of files have more coverage

Code metrics

8
121
50
1
590
416
57
0.47
2.42
50
1.14

Classes

Class Line # Actions
GDesktop 45 121 57
0.57541957.5%
 

Contributing tests

This file is covered by 1 test. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.jbgui;
22   
23    import jalview.api.AlignmentViewPanel;
24    import jalview.io.FileFormatException;
25    import jalview.util.MessageManager;
26    import jalview.util.Platform;
27   
28    import java.awt.FlowLayout;
29    import java.awt.event.ActionEvent;
30    import java.awt.event.ActionListener;
31   
32    import javax.swing.JCheckBoxMenuItem;
33    import javax.swing.JFrame;
34    import javax.swing.JMenu;
35    import javax.swing.JMenuBar;
36    import javax.swing.JMenuItem;
37   
38    /**
39    * DOCUMENT ME!
40    *
41    * @author $author$
42    * @version $Revision$
43    */
44    @SuppressWarnings("serial")
 
45    public class GDesktop extends JFrame
46    {
47   
48    protected static JMenu windowMenu = new JMenu();
49   
50    JMenuBar desktopMenubar = new JMenuBar();
51   
52    JMenu FileMenu = new JMenu();
53   
54    JMenu HelpMenu = new JMenu();
55   
56    JMenuItem inputLocalFileMenuItem = new JMenuItem();
57   
58    JMenuItem inputURLMenuItem = new JMenuItem();
59   
60    JMenuItem inputTextboxMenuItem = new JMenuItem();
61   
62    JMenuItem quit = new JMenuItem();
63   
64    JMenuItem aboutMenuItem = new JMenuItem();
65   
66    JMenuItem documentationMenuItem = new JMenuItem();
67   
68    FlowLayout flowLayout1 = new FlowLayout();
69   
70    protected JMenu toolsMenu = new JMenu();
71   
72    JMenuItem preferences = new JMenuItem();
73   
74    JMenuItem saveState = new JMenuItem();
75   
76    JMenuItem saveAsState = new JMenuItem();
77   
78    JMenuItem loadState = new JMenuItem();
79   
80    JMenu inputMenu = new JMenu();
81   
82    JMenuItem inputSequence = new JMenuItem();
83   
84    JMenuItem closeAll = new JMenuItem();
85   
86    JMenuItem raiseRelated = new JMenuItem();
87   
88    JMenuItem minimizeAssociated = new JMenuItem();
89   
90    protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
91   
92    JMenuItem garbageCollect = new JMenuItem();
93   
94    protected JMenuItem groovyShell;
95   
96    protected JCheckBoxMenuItem experimentalFeatures;
97   
98    protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
99   
100    protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
101   
102    protected JMenuItem snapShotWindow = new JMenuItem();
103   
104    /**
105    * Creates a new GDesktop object.
106    */
 
107  18 toggle public GDesktop()
108    {
109  18 super();
110  18 try
111    {
112  18 jbInit();
113  18 this.setJMenuBar(desktopMenubar);
114    } catch (Exception e)
115    {
116  0 e.printStackTrace();
117    }
118   
119  18 if (Platform.allowMnemonics())
120    {
121    //BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
122    // but here we want just not a Mac, period, right?
123  18 FileMenu.setMnemonic('F');
124  18 inputLocalFileMenuItem.setMnemonic('L');
125  18 inputURLMenuItem.setMnemonic('U');
126  18 inputTextboxMenuItem.setMnemonic('C');
127  18 quit.setMnemonic('Q');
128  18 saveState.setMnemonic('S');
129  18 loadState.setMnemonic('L');
130  18 inputMenu.setMnemonic('I');
131    }
132    }
133   
134    /**
135    * DOCUMENT ME!
136    *
137    * @throws Exception
138    * DOCUMENT ME!
139    */
 
140  18 toggle private void jbInit() throws Exception
141    {
142  18 setName("jalview-desktop");
143  18 FileMenu.setText(MessageManager.getString("action.file"));
144  18 HelpMenu.setText(MessageManager.getString("action.help"));
145  18 inputLocalFileMenuItem
146    .setText(MessageManager.getString("label.load_tree_from_file"));
147  18 inputLocalFileMenuItem.setAccelerator(
148    javax.swing.KeyStroke.getKeyStroke(java.awt.event.KeyEvent.VK_O,
149    jalview.util.ShortcutKeyMaskExWrapper.getMenuShortcutKeyMaskEx(),
150    false));
151  18 inputLocalFileMenuItem
152    .addActionListener(new java.awt.event.ActionListener()
153    {
 
154  0 toggle @Override
155    public void actionPerformed(ActionEvent e)
156    {
157  0 inputLocalFileMenuItem_actionPerformed(null);
158    }
159    });
160  18 inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
161  18 inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
162    {
 
163  0 toggle @Override
164    public void actionPerformed(ActionEvent e)
165    {
166  0 try
167    {
168  0 inputURLMenuItem_actionPerformed(null);
169    } catch (FileFormatException e1)
170    {
171  0 System.err.println("Error loading from URL: " + e1.getMessage());
172    }
173    }
174    });
175  18 inputTextboxMenuItem
176    .setText(MessageManager.getString("label.from_textbox"));
177  18 inputTextboxMenuItem
178    .addActionListener(new java.awt.event.ActionListener()
179    {
 
180  0 toggle @Override
181    public void actionPerformed(ActionEvent e)
182    {
183  0 inputTextboxMenuItem_actionPerformed(null);
184    }
185    });
186  18 quit.setText(MessageManager.getString("action.quit"));
187  18 quit.addActionListener(new java.awt.event.ActionListener()
188    {
 
189  0 toggle @Override
190    public void actionPerformed(ActionEvent e)
191    {
192  0 quit();
193    }
194    });
195  18 aboutMenuItem.setText(MessageManager.getString("label.about"));
196  18 aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
197    {
 
198  0 toggle @Override
199    public void actionPerformed(ActionEvent e)
200    {
201  0 aboutMenuItem_actionPerformed(e);
202    }
203    });
204  18 documentationMenuItem
205    .setText(MessageManager.getString("label.documentation"));
206  18 documentationMenuItem.setAccelerator(javax.swing.KeyStroke
207    .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
208  18 documentationMenuItem
209    .addActionListener(new java.awt.event.ActionListener()
210    {
 
211  0 toggle @Override
212    public void actionPerformed(ActionEvent e)
213    {
214  0 documentationMenuItem_actionPerformed();
215    }
216    });
217  18 this.getContentPane().setLayout(flowLayout1);
218  18 windowMenu.setText(MessageManager.getString("label.window"));
219  18 preferences.setText(MessageManager.getString("label.preferences"));
220  18 preferences.addActionListener(new ActionListener()
221    {
 
222  0 toggle @Override
223    public void actionPerformed(ActionEvent e)
224    {
225  0 preferences_actionPerformed(e);
226    }
227    });
228  18 toolsMenu.setText(MessageManager.getString("label.tools"));
229  18 saveState.setText(MessageManager.getString("action.save_project"));
230  18 saveState.addActionListener(new ActionListener()
231    {
 
232  0 toggle @Override
233    public void actionPerformed(ActionEvent e)
234    {
235  0 saveState_actionPerformed();
236    }
237    });
238  18 saveAsState.setText(MessageManager.getString("action.save_project_as"));
239  18 saveAsState.addActionListener(new ActionListener()
240    {
 
241  0 toggle @Override
242    public void actionPerformed(ActionEvent e)
243    {
244  0 saveAsState_actionPerformed(e);
245    }
246    });
247  18 loadState.setText(MessageManager.getString("action.load_project"));
248  18 loadState.addActionListener(new ActionListener()
249    {
 
250  0 toggle @Override
251    public void actionPerformed(ActionEvent e)
252    {
253  0 loadState_actionPerformed();
254    }
255    });
256  18 inputMenu.setText(MessageManager.getString("label.input_alignment"));
257  18 inputSequence
258    .setText(MessageManager.getString("action.fetch_sequences"));
259  18 inputSequence.addActionListener(new ActionListener()
260    {
 
261  0 toggle @Override
262    public void actionPerformed(ActionEvent e)
263    {
264  0 inputSequence_actionPerformed(e);
265    }
266    });
267  18 closeAll.setText(MessageManager.getString("action.close_all"));
268  18 closeAll.addActionListener(new ActionListener()
269    {
 
270  0 toggle @Override
271    public void actionPerformed(ActionEvent e)
272    {
273  0 closeAll_actionPerformed(e);
274    }
275    });
276  18 raiseRelated.setText(
277    MessageManager.getString("action.raise_associated_windows"));
278  18 raiseRelated.addActionListener(new ActionListener()
279    {
 
280  0 toggle @Override
281    public void actionPerformed(ActionEvent e)
282    {
283  0 raiseRelated_actionPerformed(e);
284    }
285    });
286  18 minimizeAssociated.setText(
287    MessageManager.getString("action.minimize_associated_windows"));
288  18 minimizeAssociated.addActionListener(new ActionListener()
289    {
 
290  0 toggle @Override
291    public void actionPerformed(ActionEvent e)
292    {
293  0 minimizeAssociated_actionPerformed(e);
294    }
295    });
296  18 garbageCollect
297    .setText(MessageManager.getString("label.collect_garbage"));
298  18 garbageCollect.addActionListener(new ActionListener()
299    {
 
300  0 toggle @Override
301    public void actionPerformed(ActionEvent e)
302    {
303  0 garbageCollect_actionPerformed(e);
304    }
305    });
306  18 showMemusage
307    .setText(MessageManager.getString("label.show_memory_usage"));
308  18 showMemusage.addActionListener(new ActionListener()
309    {
 
310  0 toggle @Override
311    public void actionPerformed(ActionEvent e)
312    {
313  0 showMemusage_actionPerformed(e);
314    }
315    });
316  18 showConsole
317    .setText(MessageManager.getString("label.show_java_console"));
318  18 showConsole.addActionListener(new ActionListener()
319    {
 
320  0 toggle @Override
321    public void actionPerformed(ActionEvent e)
322    {
323  0 showConsole_actionPerformed(e);
324    }
325    });
326  18 showNews.setText(MessageManager.getString("label.show_jalview_news"));
327  18 showNews.addActionListener(new ActionListener()
328    {
 
329  0 toggle @Override
330    public void actionPerformed(ActionEvent e)
331    {
332  0 showNews_actionPerformed(e);
333    }
334    });
335  18 groovyShell = new JMenuItem();
336  18 groovyShell.setText(MessageManager.getString("label.groovy_console"));
337  18 groovyShell.addActionListener(new ActionListener()
338    {
 
339  0 toggle @Override
340    public void actionPerformed(ActionEvent e)
341    {
342  0 groovyShell_actionPerformed();
343    }
344    });
345  18 experimentalFeatures = new JCheckBoxMenuItem();
346  18 experimentalFeatures
347    .setText(MessageManager.getString("label.show_experimental"));
348  18 experimentalFeatures.setToolTipText(
349    MessageManager.getString("label.show_experimental_tip"));
350  18 experimentalFeatures.addActionListener(new ActionListener()
351    {
 
352  0 toggle @Override
353    public void actionPerformed(ActionEvent e)
354    {
355  0 showExperimental_actionPerformed(experimentalFeatures.isSelected());
356    }
357    });
358   
359  18 snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
360  18 snapShotWindow.addActionListener(new ActionListener()
361    {
 
362  0 toggle @Override
363    public void actionPerformed(ActionEvent e)
364    {
365  0 snapShotWindow_actionPerformed(e);
366    }
367    });
368   
369  18 Float specversion = Platform.isJS() ? Float.valueOf(8)
370    : Float.parseFloat(
371    System.getProperty("java.specification.version"));
372   
373  18 desktopMenubar.add(FileMenu);
374  18 desktopMenubar.add(toolsMenu);
375  18 desktopMenubar.add(HelpMenu);
376  18 desktopMenubar.add(windowMenu);
377  18 FileMenu.add(inputMenu);
378  18 FileMenu.add(inputSequence);
379  18 FileMenu.addSeparator();
380    //FileMenu.add(saveState);
381  18 FileMenu.add(saveAsState);
382  18 FileMenu.add(loadState);
383  18 FileMenu.addSeparator();
384  18 FileMenu.add(quit);
385  18 HelpMenu.add(aboutMenuItem);
386  18 HelpMenu.add(documentationMenuItem);
387  18 if (!Platform.isAMacAndNotJS() || specversion < 11)
388    {
389  18 toolsMenu.add(preferences);
390    }
391  18 if (!Platform.isJS())
392    {
393  18 toolsMenu.add(showMemusage);
394  18 toolsMenu.add(showConsole);
395  18 toolsMenu.add(showNews);
396  18 toolsMenu.add(garbageCollect);
397  18 toolsMenu.add(groovyShell);
398    }
399  18 toolsMenu.add(experimentalFeatures);
400    // toolsMenu.add(snapShotWindow);
401  18 inputMenu.add(inputLocalFileMenuItem);
402  18 inputMenu.add(inputURLMenuItem);
403  18 inputMenu.add(inputTextboxMenuItem);
404  18 windowMenu.add(closeAll);
405  18 windowMenu.add(raiseRelated);
406  18 windowMenu.add(minimizeAssociated);
407  18 windowMenu.addSeparator();
408    // inputMenu.add(vamsasLoad);
409    }
410   
 
411  0 toggle protected void showExperimental_actionPerformed(boolean selected)
412    {
413    }
414   
 
415  0 toggle protected void groovyShell_actionPerformed()
416    {
417    }
418   
 
419  0 toggle protected void snapShotWindow_actionPerformed(ActionEvent e)
420    {
421    // TODO Auto-generated method stub
422   
423    }
424   
 
425  0 toggle protected void showConsole_actionPerformed(ActionEvent e)
426    {
427    // TODO Auto-generated method stub
428   
429    }
430   
 
431  0 toggle protected void showNews_actionPerformed(ActionEvent e)
432    {
433    // TODO Auto-generated method stub
434   
435    }
436   
 
437  0 toggle protected void showMemusage_actionPerformed(ActionEvent e)
438    {
439    // TODO Auto-generated method stub
440   
441    }
442   
 
443  0 toggle protected void garbageCollect_actionPerformed(ActionEvent e)
444    {
445    // TODO Auto-generated method stub
446   
447    }
448   
 
449  0 toggle protected void vamsasStMenu_actionPerformed()
450    {
451    }
452   
 
453  0 toggle public void vamsasSave_actionPerformed(ActionEvent e)
454    {
455    }
456   
457    /**
458    * DOCUMENT ME!
459    *
460    * @param e
461    * DOCUMENT ME!
462    */
 
463  0 toggle protected void inputLocalFileMenuItem_actionPerformed(
464    jalview.gui.AlignViewport av)
465    {
466    }
467   
468    /**
469    * DOCUMENT ME!
470    *
471    * @param e
472    * DOCUMENT ME!
473    * @throws FileFormatException
474    */
 
475  0 toggle protected void inputURLMenuItem_actionPerformed(
476    jalview.gui.AlignViewport av) throws FileFormatException
477    {
478    }
479   
480    /**
481    * DOCUMENT ME!
482    *
483    * @param e
484    * DOCUMENT ME!
485    */
 
486  0 toggle protected void inputTextboxMenuItem_actionPerformed(
487    AlignmentViewPanel avp)
488    {
489    }
490   
491    /**
492    * DOCUMENT ME!
493    */
 
494  0 toggle protected void quit()
495    {
496    //System.out.println("********** GDesktop.quit()");
497    }
498   
499    /**
500    * DOCUMENT ME!
501    *
502    * @param e
503    * DOCUMENT ME!
504    */
 
505  0 toggle protected void aboutMenuItem_actionPerformed(ActionEvent e)
506    {
507    }
508   
 
509  0 toggle protected void documentationMenuItem_actionPerformed()
510    {
511    }
512   
513    /**
514    * DOCUMENT ME!
515    *
516    * @param e
517    * DOCUMENT ME!
518    */
 
519  0 toggle protected void preferences_actionPerformed(ActionEvent e)
520    {
521    }
522   
523    /**
524    * DOCUMENT ME!
525    *
526    * @param e
527    * DOCUMENT ME!
528    */
 
529  0 toggle public void saveState_actionPerformed()
530    {
531    }
532   
 
533  0 toggle public void saveAsState_actionPerformed(ActionEvent e)
534    {
535    }
536   
537    /**
538    * DOCUMENT ME!
539    *
540    * @param e
541    * DOCUMENT ME!
542    */
 
543  0 toggle public void loadState_actionPerformed()
544    {
545    }
546   
547    /**
548    * DOCUMENT ME!
549    *
550    * @param e
551    * DOCUMENT ME!
552    */
 
553  0 toggle public void loadJalviewAlign_actionPerformed(ActionEvent e)
554    {
555    }
556   
 
557  0 toggle public void vamsasStart_actionPerformed(ActionEvent e)
558    {
559   
560    }
561   
 
562  0 toggle public void inputSequence_actionPerformed(ActionEvent e)
563    {
564   
565    }
566   
 
567  0 toggle public void vamsasStop_actionPerformed(ActionEvent e)
568    {
569   
570    }
571   
 
572  0 toggle public void closeAll_actionPerformed(ActionEvent e)
573    {
574   
575    }
576   
 
577  0 toggle public void raiseRelated_actionPerformed(ActionEvent e)
578    {
579   
580    }
581   
 
582  0 toggle public void minimizeAssociated_actionPerformed(ActionEvent e)
583    {
584   
585    }
586   
 
587  0 toggle public void vamsasImport_actionPerformed(ActionEvent e)
588    {
589    }
590    }
  • Report generated by OpenClover v 4.4.1 on Thu Aug 13 2020 12:06:48 BST using coverage data from Thu Aug 13 2020 12:06:40 BST.
  • OpenClover is free and open-source software.