Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
PromptUserConfig	27	55	23	0.3295454733%	Show methods

Class PromptUserConfig

Class PromptUserConfig	Line # 27	Total Statements 55	Complexity 23	TOTAL Coverage 0.3295454733%
isRemoveifunset() : boolean   isRemoveifunset() : boolean	7474	1.01	1.01	0.0 0.00%
setRemoveifunset(boolean) : void   setRemoveifunset(boolean) : void	8383	1.01	1.01	0.0 0.00%
PromptUserConfig(Component,String,String,String,Runnable,Runnable,Runnable,boolean)   PromptUserConfig(Component,String,String,String,Runnable,Runnable,Runnable,boolean)	106106	9.09	1.01	1.0 1.0100%
run() : void   run() : void	121121	28.028	12.012	0.4090909 0.409090940.9%
raiseDialog() : void   raiseDialog() : void	194194	16.016	8.08	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.2159091	mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations	1PASS
	0.2159091	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS
	0.2159091	jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews	1PASS
	0.2159091	jalview.analysis.AnnotationSorterTest.testSort_timingSemisortedjalview.analysis.AnnotationSorterTest.testSort_timingSemisorted	1PASS
	0.11363637	jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import jalview.bin.Cache;
24
25		import java.awt.Component;
26
		33% Uncovered Elements: 59 (88) Complexity: 23 Complexity Density: 0.42
27		public class PromptUserConfig implements Runnable
28		{
29		/**
30		* Given a boolean Cache option:
31		*
32		* 1. Prompt the user with the given text if the option is unset, and set the
33		* option accordingly (yes/no==true/false).
34		*
35		* 2. Execute the given Runnables according to the state of the config option.
36		*
37		*/
38		/**
39		* boolean property to set
40		*/
41		String property = null;
42
43		/**
44		* can the user cancel rather than set the property ?
45		*/
46		boolean allowCancel = false;
47
48		/**
49		* title of prompt dialog
50		*/
51		String dialogTitle;
52
53		/**
54		* text in dialog
55		*/
56		String dialogText;
57
58		/**
59		* runnables for all cases.
60		*/
61		Runnable iftrue = null, iffalse = null, ifundef = null;
62
63		private Component component;
64
65		/**
66		* if set, remove the property if the user says no rather than setting it to
67		* false.
68		*/
69		private boolean removeifunset;
70
71		/**
72		* @return the removeifunset
73		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
74	0	public boolean isRemoveifunset()...
75		{
76	0	return removeifunset;
77		}
78
79		/**
80		* @param removeifunset
81		* the removeifunset to set
82		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
83	0	public void setRemoveifunset(boolean removeifunset)...
84		{
85	0	this.removeifunset = removeifunset;
86		}
87
88		/**
89		* @param desktop
90		* - where the dialog box will be shown
91		* @param property
92		* - boolean property in jalview.bin.Cache
93		* @param dialogTitle
94		* - title of prompt box
95		* @param dialogText
96		* - text of box
97		* @param iftrue
98		* - executed if property is true
99		* @param iffalse
100		* - executed if property is false
101		* @param ifundef
102		* - executed if property was not set after prompting.
103		* @param allowCancel
104		* - allow the user to cancel rather than set the property
105		*/
		100% Uncovered Elements: 0 (9) Complexity: 1 Complexity Density: 0.11
106	17	public PromptUserConfig(Component desktop, String property,...
107		String dialogTitle, String dialogText, Runnable iftrue,
108		Runnable iffalse, Runnable ifundef, boolean allowCancel)
109		{
110	17	super();
111	17	this.component = desktop;
112	17	this.property = property;
113	17	this.dialogTitle = dialogTitle;
114	17	this.dialogText = dialogText;
115	17	this.iftrue = iftrue;
116	17	this.iffalse = iffalse;
117	17	this.ifundef = ifundef;
118	17	this.allowCancel = allowCancel;
119		}
120
		40.9% Uncovered Elements: 26 (44) Complexity: 12 Complexity Density: 0.43
121	5	@Override...
122		public void run()
123		{
124	5	if (property == null)
125		{
126	0	return;
127		}
128		// First - check to see if wee have an old questionnaire/response id pair.
129	5	String lastq = jalview.bin.Cache.getProperty(property);
130
131	5	if (lastq == null)
132		{
133	0	raiseDialog();
134	0	Cache.log.debug("Got user response.");
135		}
136	5	lastq = jalview.bin.Cache.getProperty(property);
137	5	String extype = "";
138	5	Exception e = null;
139	5	if (lastq == null)
140		{
141		// execute the ifundef
142	0	try
143		{
144	0	if (ifundef != null)
145		{
146	0	ifundef.run();
147		}
148		} catch (Exception ex)
149		{
150	0	e = ex;
151	0	extype = "undefined";
152		}
153		}
154	5	else if (Boolean.valueOf(lastq).booleanValue())
155		{
156		// execute the iftrue
157	0	try
158		{
159	0	if (iftrue != null)
160		{
161	0	iftrue.run();
162		}
163		} catch (Exception ex)
164		{
165	0	e = ex;
166	0	extype = "if true";
167		}
168		}
169		else
170		{
171	5	try
172		{
173	5	if (iffalse != null)
174		{
175	5	iffalse.run();
176		}
177		} catch (Exception ex)
178		{
179	0	e = ex;
180	0	extype = "if false";
181		}
182		}
183		// report any exceptions
184	5	if (e != null)
185		{
186	0	Cache.log.warn("Unexpected exception when executing the " + extype
187		+ " runnable for property " + property, e);
188		}
189		}
190
191		/**
192		* raise the property dialog
193		*/
		0% Uncovered Elements: 28 (28) Complexity: 8 Complexity Density: 0.5
194	0	private void raiseDialog()...
195		{
196	0	if (jalview.bin.Cache.log.isDebugEnabled())
197		{
198	0	jalview.bin.Cache.log.debug("Prompting user for " + dialogTitle
199		+ " for Cache property " + property);
200		}
201	0	try
202		{
203	0	int reply = JvOptionPane.showConfirmDialog(Desktop.desktop, // component,
204		dialogText, dialogTitle,
205	0	(allowCancel) ? JvOptionPane.YES_NO_CANCEL_OPTION
206		: JvOptionPane.YES_NO_OPTION,
207		JvOptionPane.QUESTION_MESSAGE);
208
209		// and finish parsing the result
210	0	jalview.bin.Cache.log.debug("Got response : " + reply);
211	0	if (reply == JvOptionPane.YES_OPTION)
212		{
213	0	jalview.bin.Cache.setProperty(property, "true");
214		}
215	0	else if (reply == JvOptionPane.NO_OPTION)
216		{
217	0	if (removeifunset)
218		{
219	0	jalview.bin.Cache.removeProperty(property);
220		}
221		else
222		{
223	0	jalview.bin.Cache.setProperty(property, "false");
224		}
225		}
226		else
227		{
228	0	jalview.bin.Cache.log.debug("User cancelled setting " + property);
229	0	return;
230		}
231		// verify the property is set for debugging
232	0	if (jalview.bin.Cache.log.isDebugEnabled())
233		{
234	0	jalview.bin.Cache.log.debug("User set property to "
235		+ jalview.bin.Cache.getProperty(property));
236		}
237		} catch (Exception e)
238		{
239	0	jalview.bin.Cache.log.warn(
240		"Unexpected exception when prompting user for yes/no setting for property "
241		+ property,
242		e);
243		}
244		}
245		}