Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
APQHandlers	38	32	15	0.2641509526.4%	Show methods

Class APQHandlers

Class APQHandlers	Line # 38	Total Statements 32	Complexity 15	TOTAL Coverage 0.2641509526.4%
APQHandlers()   APQHandlers()	4242	0.00	1.01	-1.0 -1.0 -
handleAbout(AboutEvent) : void   handleAbout(AboutEvent) : void	7070	1.01	1.01	0.0 0.00%
handlePreferences(PreferencesEvent) : void   handlePreferences(PreferencesEvent) : void	8787	1.01	1.01	0.0 0.00%
handleQuitRequestWith(QuitEvent,QuitResponse) : void   handleQuitRequestWith(QuitEvent,QuitResponse) : void	104104	11.011	3.03	0.0 0.00%
setAPQHandlers(jalview.gui.Desktop) : boolean   setAPQHandlers(jalview.gui.Desktop) : boolean	4545	19.019	9.09	0.41935483 0.4193548341.9%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.0754717	jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue	1PASS

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import jalview.util.MessageManager;
24		import jalview.util.Platform;
25
26		import java.awt.Desktop;
27		import java.awt.desktop.AboutEvent;
28		import java.awt.desktop.AboutHandler;
29		import java.awt.desktop.PreferencesEvent;
30		import java.awt.desktop.PreferencesHandler;
31		import java.awt.desktop.QuitEvent;
32		import java.awt.desktop.QuitHandler;
33		import java.awt.desktop.QuitResponse;
34		import java.awt.desktop.QuitStrategy;
35
36		import javax.swing.JOptionPane;
37
		26.4% Uncovered Elements: 39 (53) Complexity: 15 Complexity Density: 0.47
38		public class APQHandlers
39		{
40		private static boolean setAPQHandlers = false;
41
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
42	0	public APQHandlers() {...
43		}
44
		41.9% Uncovered Elements: 18 (31) Complexity: 9 Complexity Density: 0.47
45	18	protected static boolean setAPQHandlers(jalview.gui.Desktop jalviewDesktop)...
46		{
47		// flagging this test to avoid unnecessary reflection
48	18	if (!setAPQHandlers)
49		{
50		// see if the Quit, About and Preferences handlers are available
51	2	Class desktopClass = Desktop.class;
52	2	Desktop hdesktop = Desktop.getDesktop();
53
54	2	try
55		{
56	2	Float specversion = Float.parseFloat(
57		System.getProperty("java.specification.version"));
58
59	2	if (specversion >= 9)
60		{
61	2	if (Platform.isAMacAndNotJS())
62		{
63	0	if (desktopClass.getDeclaredMethod("setAboutHandler",
64		new Class[]
65		{ AboutHandler.class }) != null)
66		{
67
68	0	hdesktop.setAboutHandler(new AboutHandler()
69		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
70	0	@Override...
71		public void handleAbout(AboutEvent e)
72		{
73	0	jalviewDesktop.aboutMenuItem_actionPerformed(null);
74		}
75		});
76
77		}
78
79	0	if (desktopClass.getDeclaredMethod("setPreferencesHandler",
80		new Class[]
81		{ PreferencesHandler.class }) != null)
82		{
83
84	0	hdesktop.setPreferencesHandler(
85		new PreferencesHandler()
86		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
87	0	@Override...
88		public void handlePreferences(
89		PreferencesEvent e)
90		{
91	0	jalviewDesktop.preferences_actionPerformed(null);
92		}
93		});
94
95		}
96
97	0	if (desktopClass.getDeclaredMethod("setQuitHandler",
98		new Class[]
99		{ QuitHandler.class }) != null)
100		{
101
102	0	hdesktop.setQuitHandler(new QuitHandler()
103		{
		0% Uncovered Elements: 15 (15) Complexity: 3 Complexity Density: 0.27
104	0	@Override...
105		public void handleQuitRequestWith(
106		QuitEvent e, QuitResponse r)
107		{
108	0	boolean confirmQuit = jalview.bin.Cache
109		.getDefault(
110		jalview.gui.Desktop.CONFIRM_KEYBOARD_QUIT,
111		true);
112	0	int n;
113	0	if (confirmQuit)
114		{
115	0	n = JOptionPane.showConfirmDialog(null,
116		MessageManager.getString("label.quit_jalview"),
117		MessageManager.getString("action.quit"),
118		JOptionPane.OK_CANCEL_OPTION,
119		JOptionPane.PLAIN_MESSAGE, null);
120		}
121		else
122		{
123	0	n = JOptionPane.OK_OPTION;
124		}
125	0	if (n == JOptionPane.OK_OPTION)
126		{
127	0	System.out.println("Shortcut Quit confirmed by user");
128	0	jalviewDesktop.quit();
129	0	r.performQuit(); // probably won't reach this line, but just
130		// in
131		// case
132		}
133		else
134		{
135	0	r.cancelQuit();
136	0	System.out.println("Shortcut Quit cancelled by user");
137		}
138		}
139		});
140	0	hdesktop.setQuitStrategy(
141		QuitStrategy.CLOSE_ALL_WINDOWS);
142
143		}
144		}
145	2	setAPQHandlers = true;
146		}
147		else
148		{
149	0	System.out.println(
150		"Not going to try setting APQ Handlers as java.spec.version is "
151		+ specversion);
152		}
153
154		} catch (Exception e)
155		{
156	0	System.out.println(
157		"Exception when looking for About, Preferences, Quit Handlers");
158		// e.printStackTrace();
159		} catch (Throwable t)
160		{
161	0	System.out.println(
162		"Throwable when looking for About, Preferences, Quit Handlers");
163		// t.printStackTrace();
164		}
165
166		}
167
168	18	return setAPQHandlers;
169		}
170
171		}