Jalview Gitlab

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  Ben Soares <14835216+benzoid@users.noreply.github.com> 4 days ago 5fa4660d27aedf048f673bf4ff270a0587bd512e

  Merge branch 'epic/JAL-4320_JAL-4671_swingjs_gradle_plugin_for_jalviewjs' into epic/JAL-4671_JAL-4059_SwingJSPlugin_with_updated_SwingJS
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 38da210e113735a373aca5029fbd650cce248261 m

  JAL-4320 First pass at BUILDING.md doc

  • doc/BUILDING.md (version 38da210e113735a373aca5029fbd650cce248261)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 0278a3431f373dd4d5e4cf631411a65a7fe51533 m

  JAL-4320 Fix some typos and a little bug

  • jalview-website/build.gradle (version 0278a3431f373dd4d5e4cf631411a65a7fe51533)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 8b81af31a0bc6cd42184d4fc73fda675abbe2248 m

  JAL-4320 add the right tasks to the helper tasks

  • build.gradle (version 8b81af31a0bc6cd42184d4fc73fda675abbe2248)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago d52cb82e19b154449c252ddf9bdae63a2a4759da m

  JAL-4671 First part of doc

  • doc/BUILDING.md (version d52cb82e19b154449c252ddf9bdae63a2a4759da)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 3a2a83a2f7395bd6b3f24b6efc7318278e4356dc m

  JAL-4671 extra logging

  • jalview-launcher/build.gradle (version 3a2a83a2f7395bd6b3f24b6efc7318278e4356dc)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago 8ded7b584bb93699413bd027d0254b79d4bdebdf m

  JAL-4320 Change bamboo_planKey to BAMBOO_PLANKEY for consistency

  • gradle.properties (version 8ded7b584bb93699413bd027d0254b79d4bdebdf)
  • build.gradle (version 8ded7b584bb93699413bd027d0254b79d4bdebdf)
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  Ben Soares <b.soares@dundee.ac.uk> 5 days ago e31802e24e6fc3923f4087a835ab94db9663a7df m

  JAL-4671 A bit more tidying of old things

  • tmp_original/settings.gradle (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/libs/slf4j-nop-1.7.36.jar (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/libs/slf4j-api-1.7.36.jar (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/libs/log4j-slf4j18-impl-2.17.1.jar (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/libs/log4j-core-2.17.1.jar (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/libs/log4j-api-2.17.1.jar (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/gradle.properties (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • tmp_original/build.gradle (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • old/JAVA-11-README (version e31802e24e6fc3923f4087a835ab94db9663a7df)
  • JAVA-11-README (version e31802e24e6fc3923f4087a835ab94db9663a7df)
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  Ben Soares <b.soares@dundee.ac.uk> 6 days ago 5abb00cd4db7febb60d846a77a67aa691f2d0ab4 m

  JAL-4671 Moved back getdown folder -- accidentally moved into old

  • old/getdown/pom.xml (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_zh.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_pt.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_ko.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_ja.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_it.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_fr.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_es.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages_de.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/resources/com/threerings/getdown/messages.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/jalview/bin/StartupNotificationListener.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/StatusPanel.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/RotatingBackgrounds.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/ProxyUtil.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/ProxyPanel.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/MultipleGetdownRunning.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/GetdownApp.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/Getdown.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/src/main/java/com/threerings/getdown/launcher/AbortPanel.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/pom.xml (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/build.gradle (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_zh.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_pt.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_ko.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_ja.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_it.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_fr.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_es.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages_de.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/main/com/threerings/getdown/messages.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/jalview/bin/StartupNotificationListener.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/jalview/bin/StartupNotificationListener$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/StatusPanel.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/StatusPanel$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/RotatingBackgrounds.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/RotatingBackgrounds$ImageLoader.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/ProxyUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/ProxyUtil$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/Resource.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/Properties.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/PathBuilder.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/EnvConfig.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/Digest.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/ClassPath.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/Build.java.tmpl (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/data/Application.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/cache/ResourceCache.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/cache/GarbageCollector.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/main/java/com/threerings/getdown/Log.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/testapp.jar (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/script.sh (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/getdown.txt (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/funny%test dir/some=file.txt (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/foo.jar (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/crazyhashfile#txt (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/resources/testapp/background.png (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/src/it/java/com/threerings/getdown/tests/DigesterIT.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/pom.xml (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/gradle.properties (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/build.gradle (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/mockito-extensions/org.mockito.plugins.MockMaker (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/VersionUtilTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/StringUtilTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/HostWhitelistTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/FileUtilTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/FileUtilTest$1CountingVisitor.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/ConfigTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/ConfigTest$Pair.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/util/ColorTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/data/SysPropsTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/data/PathBuilderTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/data/EnvConfigTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/data/ClassPathTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/cache/ResourceCacheTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/test/com/threerings/getdown/cache/GarbageCollectorTest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/main/com/threerings/getdown/data/Build.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/net/meyfa/sha256/Sha256.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/StringUtils.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/LaunchUtils.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/HttpUtils.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/GetdownUtils.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/FileUtils.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/FileUtils$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/ErrorLog.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/DigestUtils.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/util/ChannelProperties.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/bin/ScreenInfo.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/bin/MemorySetting.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/bin/HiDPISetting.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/jalview/bin/GetMemory.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/VersionUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/StringUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/StreamUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/Rectangle.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/ProgressObserver.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/ProgressAggregator.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
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  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/MessageUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/LaunchUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/HostWhitelist.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/FileUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/FileUtil$Visitor.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/ConnectionUtil.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/Config.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/Config$ParseOpts.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/Color.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/util/Base64.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
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  • old/getdown/core/bin/localFiles/com/threerings/getdown/tools/JarDiffCodes.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/tools/JarDiff.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • old/getdown/core/bin/localFiles/com/threerings/getdown/tools/JarDiff$JarFile2.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
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  • getdown/core/src/main/java/com/threerings/getdown/util/Color.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/util/Base64.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/tools/Patcher.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/tools/JarDiffPatcher.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/tools/JarDiffCodes.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/tools/JarDiff.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/tools/Digester.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/tools/Differ.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/spi/ProxyAuth.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/net/HTTPDownloader.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/src/main/java/com/threerings/getdown/net/Downloader.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/net/Downloader$State.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/net/Downloader$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/SysProps.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Resource.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Resource$Attr.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Resource$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Properties.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/PathBuilder.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/EnvConfig.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/EnvConfig$Note.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/EnvConfig$Note$Level.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Digest.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Digest$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/ClassPath.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Build.java.tmpl (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$UpdateInterface.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$UpdateInterface$Step.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$StatusDisplay.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$AuxGroup.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$3.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$3$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$2.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$2$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/data/Application$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/cache/ResourceCache.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/cache/GarbageCollector.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/cache/GarbageCollector$1.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/Log.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/Log$Shim.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/bin/localFiles/com/threerings/getdown/Log$OneLineFormatter.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/.settings/org.eclipse.jdt.core.prefs (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/core/.project-MOVED (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/ant/src/main/java/com/threerings/getdown/tools/DigesterTask.java (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/ant/pom.xml (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/ant/build.gradle (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/ant/bin/main/com/threerings/getdown/tools/DigesterTask.class (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/ant/.project-MOVED (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/README.md (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/LICENSE (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/CHANGELOG.md (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
  • getdown/AUTHORS (version 5abb00cd4db7febb60d846a77a67aa691f2d0ab4)
• 

  Ben Soares <b.soares@dundee.ac.uk> 6 days ago a393b35a100c88a87bf649d629d95aff17cb0a2f m

  JAL-4320 Make jalview-app compilable on its own [TODO, move the channels into jalview-app]

  • jalview-app/gradlew.bat (version a393b35a100c88a87bf649d629d95aff17cb0a2f)
  • jalview-app/gradlew (version a393b35a100c88a87bf649d629d95aff17cb0a2f)
  • jalview-app/gradle/wrapper/gradle-wrapper.properties (version a393b35a100c88a87bf649d629d95aff17cb0a2f)
  • jalview-app/gradle/wrapper/gradle-wrapper.jar (version a393b35a100c88a87bf649d629d95aff17cb0a2f)
  • jalview-app/gradle.properties (version a393b35a100c88a87bf649d629d95aff17cb0a2f)
  • jalview-app/build.gradle (version a393b35a100c88a87bf649d629d95aff17cb0a2f)
• 

  Ben Soares <b.soares@dundee.ac.uk> 6 days ago 20e9e613387286474e4b704fe8f168864d3520b7 m

  JAL-4671 Moved old folders and top-level files

  • unused/xml/sax/ext/Locator2.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ext/LexicalHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ext/EntityResolver2.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ext/DefaultHandler2.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ext/DeclHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ext/Attributes2Impl.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ext/Attributes2.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/demo/EntityDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/demo/DemoHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/demo/CharacterStreamDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/demo/ByteStreamDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/XMLReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/XMLFilter.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/SAXParseException.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/SAXNotSupportedException.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/SAXNotRecognizedException.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/SAXException.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/Parser.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/Locator.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/InputSource.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/HandlerBase.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ErrorHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/EntityResolver.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/DocumentHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/DTDHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/ContentHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/Attributes.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/xml/sax/AttributeList.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/swing/SwingContainerWrapper.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/swing/SwingComponentWrapper.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/swing/MigLayout.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/UnitValue.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/UnitConverter.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/ResizeConstraint.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/PlatformDefaults.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/LinkHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/LayoutUtil.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/LayoutCallback.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/LC.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/InCellGapProvider.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/Grid.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/DimConstraint.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/ContainerWrapper.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/ConstraintParser.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/ComponentWrapper.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/CC.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/BoundSize.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/AnimSpec.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/layout/AC.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/net/miginfocom/README_SWINGJS.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/json-site.zip (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/ZipTools.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/ZipData.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/XmlUtil.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/V3d.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/V3.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/T4.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/T3i.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/T3d.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/T3.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/StringDataReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/SB.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Rdr.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Quat.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/PT.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/P4.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/P3i.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/P3.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/OC.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/MessagePackReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Measure.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Matrix.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/M4.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/M34.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/M3.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Lst.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/ListDataReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/LimitedLineReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/JSThread.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/JSONException.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/JSJSONParser.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/JSAudioThread.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Encoding.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Eigen.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/DebugJS.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/DataReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/DF.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/CompoundDocument.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/CompoundDocHeader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/CompoundDocDirEntry.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/CifDataParser.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/CU.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/BinaryDocument.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/Base64.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/BS.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/BC.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/BArray.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/ArrayDataReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/AjaxURLStreamHandlerFactory.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/AjaxURLStreamHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/AjaxURLConnection.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/AU.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/util/A4.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/img/PpmEncoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/img/PngEncoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/img/PdfEncoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • unused/javajs/img/JpgEncoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/models/templates/RNANodeValueTemplate.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • srcjar/fr/orsay/lri/varna/models/templates/RNANodeValue2TemplateDistance.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • srcjar/fr/orsay/lri/varna/models/templates/DrawRNATemplateMethod.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/unused/javajs/util/BArray.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/unused/javajs/util/ArrayDataReader.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/unused/javajs/util/AjaxURLStreamHandlerFactory.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/unused/javajs/util/AjaxURLStreamHandler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/unused/javajs/util/AjaxURLConnection.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/unused/javajs/util/AU.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/unused/javajs/img/PdfEncoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/unused/javajs/img/ImageEncoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/unused/javajs/img/BMPDecoder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/unused/javajs/export/PDFObject.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/models/annotations/TextAnnotation.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/exceptions/MappingException.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/controlers/ControleurBaseSpecialColorEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/components/ZoomWindow.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/components/BaseTableModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/components/AnnotationTableModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • srcjar/fr/orsay/lri/varna/components/ActionRenderer.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • srcjar/fr/orsay/lri/varna/applications/templateEditor/UnpairedRegion.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/srcjar/fr/orsay/lri/varna/controlers/ControleurClicMovement.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/controlers/ControleurBorder.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/controlers/ControleurBlinkingThread.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/controlers/ControleurBaseSpecialColorEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/controlers/ControleurBPHeightIncrement.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/ZoomWindow.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/VARNAConsole.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/ReorderableJList.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/GradientEditorPanel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/ColorRenderer.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/BaseTableModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/BaseSpecialColorEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/AnnotationTableModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/ActionRenderer.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/components/ActionEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/UnpairedRegion.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/TemplatePanel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/TemplateEditorPanelUI.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/TemplateEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/MouseControler.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/Helix.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/GraphicalTemplateElement.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/Couple.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/templateEditor/Connection.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/Watcher.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/VARNAGUITreeModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/VARNAGUITree.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/VARNAGUIRenderer.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/VARNAGUIModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/VARNAGUICellEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/newGUI/VARNAGUI.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/Watcher.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqTreeModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqTree.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqRNASecStrModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqNode.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqGUI.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqFileModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqCellRenderer.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqCellEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/fragseq/FragSeqAnnotationDataModel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/VARNAcmd.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/VARNAPrinter.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/VARNAOnlineDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/VARNAGUI.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/VARNAEditor.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/VARNAConsoleDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/SuperpositionDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/SecStrConsensus.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/NussinovDesignDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/NussinovDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/FileNameExtensionFilter.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/BasicINI.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/applications/AlignmentDemo.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/VARNAPanel.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/VARNA.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/fr/orsay/lri/varna/README_SWINGJS.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/srcjar/README_SWINGJS.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/src2/README_SWINGJS.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/optimization/timing-js-firefox-bh.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/optimization/timing-java-bh.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/optimization/full-profile-ENSG000000157764-to-display-ff.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/optimization/full-profile-ENSG000000157764-to-display-chrome.txt (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/nbproject/project.xml (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/nbproject/genfiles.properties (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/nbbuild.xml (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/modules (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/jalview-jalopy.xml (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/j11mod/stax2-api-MODULE.jar (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/j11mod/stax-ex.jar (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/j11mod/saaj-impl.jar (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/j11mod/istack-commons-runtime.jar (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/j11mod/getdown-launcher.jar (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/j11mod/FastInfoset.jar (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/getdown/pom.xml (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/getdown/mvn_cmd (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/getdown/launcher/src/main/java/jalview/bin/StartupNotificationListener.java (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/getdown/launcher/bin/localFiles/jalview/bin/StartupNotificationListener.class (version 20e9e613387286474e4b704fe8f168864d3520b7)
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  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/RotatingBackgrounds.class (version 20e9e613387286474e4b704fe8f168864d3520b7)
  • old/getdown/launcher/bin/localFiles/com/threerings/getdown/launcher/RotatingBackgrounds$ImageLoader.class (version 20e9e613387286474e4b704fe8f168864d3520b7)
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