Build: #5 failed
Job: Clover and Tests failed
Build log
The build generated 275 lines of output. Download or view full build log
| 02-Jul-2026 20:51:23 | Build Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5) started building on agent Default Agent |
| 02-Jul-2026 20:51:23 | |
| 02-Jul-2026 20:51:23 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 |
| 02-Jul-2026 20:51:23 | Executing build Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5) |
| 02-Jul-2026 20:51:23 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 02-Jul-2026 20:51:23 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 |
| 02-Jul-2026 20:51:23 | Updating source code to revision: fc34d4a3866803770b43325d3af83ae0731434b9 |
| 02-Jul-2026 20:51:23 | Fetching 'refs/heads/dev/JAL-4688_gitlab_ci' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 02-Jul-2026 20:51:23 | Checking out revision fc34d4a3866803770b43325d3af83ae0731434b9. |
| 02-Jul-2026 20:51:23 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 |
| 02-Jul-2026 20:51:23 | 7848a59..fc34d4a dev/JAL-4688_gitlab_ci -> origin/dev/JAL-4688_gitlab_ci |
| 02-Jul-2026 20:51:23 | Already on 'dev/JAL-4688_gitlab_ci' |
| 02-Jul-2026 20:51:23 | Your branch is behind 'origin/dev/JAL-4688_gitlab_ci' by 1 commit, and can be fast-forwarded. |
| 02-Jul-2026 20:51:23 | (use "git pull" to update your local branch) |
| 02-Jul-2026 20:51:23 | HEAD is now at fc34d4a Update .gitlab-ci.yml |
| 02-Jul-2026 20:51:23 | Updated source code to revision: fc34d4a3866803770b43325d3af83ae0731434b9 |
| 02-Jul-2026 20:51:23 | Finished task 'Checkout Default Repository' with result: Success |
| 02-Jul-2026 20:51:23 | Running pre-build action: VCS Version Collector |
| 02-Jul-2026 20:51:23 | Running pre-build action: Artifactory Release Staging |
| 02-Jul-2026 20:51:23 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 02-Jul-2026 20:51:23 | Bamboo Artifactory Plugin version: 2.6.2 |
| 02-Jul-2026 20:51:23 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=dev/JAL-4688_gitlab_ci bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_repository_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_48169095_git_branch=dev/JAL-4688_gitlab_ci bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB758-JOB1 bamboo_shortPlanName=dev-JAL-4688_gitlab_ci bamboo_planRepository_name=Jalview Gitlab bamboo_repository_48169095_git_username= LOGNAME=bamboo bamboo_buildNumber=5 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_repository_48169095_name=Jalview Gitlab bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci bamboo_shortPlanKey=GDB758 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_buildTimeStamp=2026-07-02T20:51:22.976+01:00 bamboo_repository_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_repository_git_branch=dev/JAL-4688_gitlab_ci bamboo_buildResultKey=JB-GDB758-JOB1-5 bamboo_repository_branch_name=dev/JAL-4688_gitlab_ci bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=fc34d4a3866803770b43325d3af83ae0731434b9 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_48169095_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_repository_name=Jalview Gitlab JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_branch_name=dev/JAL-4688_gitlab_ci _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972621 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planKey=JB-GDB758 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_48169095_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d HOME=/home/bamboo bamboo_planRepository_1_branchName=dev/JAL-4688_gitlab_ci PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 02-Jul-2026 20:51:23 | 2414 |
| 02-Jul-2026 20:51:24 | |
| 02-Jul-2026 20:51:24 | FAILURE: Build failed with an exception. |
| 02-Jul-2026 20:51:24 | |
| 02-Jul-2026 20:51:24 | * What went wrong: |
| 02-Jul-2026 20:51:24 | Could not resolve all files for configuration 'classpath'. |
| 02-Jul-2026 20:51:24 | > Could not resolve org.gradle.toolchains:foojay-resolver:1.0.0. |
| 02-Jul-2026 20:51:24 | Required by: |
| 02-Jul-2026 20:51:24 | unspecified:unspecified:unspecified > org.gradle.toolchains.foojay-resolver-convention:org.gradle.toolchains.foojay-resolver-convention.gradle.plugin:1.0.0 |
| 02-Jul-2026 20:51:24 | > No matching variant of org.gradle.toolchains:foojay-resolver:1.0.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 02-Jul-2026 20:51:24 | - Variant 'javadocElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 02-Jul-2026 20:51:24 | - Incompatible because this component declares documentation and the consumer needed a library |
| 02-Jul-2026 20:51:24 | - Other compatible attributes: |
| 02-Jul-2026 20:51:24 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 02-Jul-2026 20:51:24 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 02-Jul-2026 20:51:24 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 02-Jul-2026 20:51:24 | - Variant 'shadowRuntimeElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a library, packaged as a jar, and its dependencies repackaged (shadow jar): |
| 02-Jul-2026 20:51:24 | - Incompatible because this component declares a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '7.6' and the consumer needed a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 02-Jul-2026 20:51:24 | - Variant 'sourcesElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 02-Jul-2026 20:51:24 | - Incompatible because this component declares documentation and the consumer needed a library |
| 02-Jul-2026 20:51:24 | - Other compatible attributes: |
| 02-Jul-2026 20:51:24 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 02-Jul-2026 20:51:24 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 02-Jul-2026 20:51:24 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 02-Jul-2026 20:51:24 | |
| 02-Jul-2026 20:51:24 | * Try: |
| 02-Jul-2026 20:51:24 | > Run with --stacktrace option to get the stack trace. |
| 02-Jul-2026 20:51:24 | > Run with --info or --debug option to get more log output. |
| 02-Jul-2026 20:51:24 | > Run with --scan to get full insights. |
| 02-Jul-2026 20:51:24 | |
| 02-Jul-2026 20:51:24 | * Get more help at https://help.gradle.org |
| 02-Jul-2026 20:51:24 | |
| 02-Jul-2026 20:51:24 | BUILD FAILED in 584ms |
| 02-Jul-2026 20:51:24 | |
| 02-Jul-2026 20:51:24 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 02-Jul-2026 20:51:24 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 02-Jul-2026 20:51:24 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 02-Jul-2026 20:51:24 | Bamboo Artifactory Plugin version: 2.6.2 |
| 02-Jul-2026 20:51:24 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=dev/JAL-4688_gitlab_ci bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_repository_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_48169095_git_branch=dev/JAL-4688_gitlab_ci bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB758-JOB1 bamboo_shortPlanName=dev-JAL-4688_gitlab_ci bamboo_planRepository_name=Jalview Gitlab bamboo_repository_48169095_git_username= LOGNAME=bamboo bamboo_buildNumber=5 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_repository_48169095_name=Jalview Gitlab bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci bamboo_shortPlanKey=GDB758 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_buildTimeStamp=2026-07-02T20:51:22.976+01:00 bamboo_repository_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_repository_git_branch=dev/JAL-4688_gitlab_ci bamboo_buildResultKey=JB-GDB758-JOB1-5 bamboo_repository_branch_name=dev/JAL-4688_gitlab_ci bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=fc34d4a3866803770b43325d3af83ae0731434b9 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_48169095_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_branch_name=dev/JAL-4688_gitlab_ci _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972621 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planKey=JB-GDB758 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_48169095_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d HOME=/home/bamboo bamboo_planRepository_1_branchName=dev/JAL-4688_gitlab_ci PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 02-Jul-2026 20:51:24 | 2414 |
| 02-Jul-2026 20:51:27 | |
| 02-Jul-2026 20:51:27 | FAILURE: Build failed with an exception. |
| 02-Jul-2026 20:51:27 | |
| 02-Jul-2026 20:51:27 | * What went wrong: |
| 02-Jul-2026 20:51:27 | Could not resolve all files for configuration 'classpath'. |
| 02-Jul-2026 20:51:27 | > Could not resolve org.gradle.toolchains:foojay-resolver:1.0.0. |
| 02-Jul-2026 20:51:27 | Required by: |
| 02-Jul-2026 20:51:27 | unspecified:unspecified:unspecified > org.gradle.toolchains.foojay-resolver-convention:org.gradle.toolchains.foojay-resolver-convention.gradle.plugin:1.0.0 |
| 02-Jul-2026 20:51:27 | > No matching variant of org.gradle.toolchains:foojay-resolver:1.0.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 02-Jul-2026 20:51:27 | - Variant 'javadocElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 02-Jul-2026 20:51:27 | - Incompatible because this component declares documentation and the consumer needed a library |
| 02-Jul-2026 20:51:27 | - Other compatible attributes: |
| 02-Jul-2026 20:51:27 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 02-Jul-2026 20:51:27 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 02-Jul-2026 20:51:27 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 02-Jul-2026 20:51:27 | - Variant 'shadowRuntimeElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a library, packaged as a jar, and its dependencies repackaged (shadow jar): |
| 02-Jul-2026 20:51:27 | - Incompatible because this component declares a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '7.6' and the consumer needed a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 02-Jul-2026 20:51:27 | - Variant 'sourcesElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 02-Jul-2026 20:51:27 | - Incompatible because this component declares documentation and the consumer needed a library |
| 02-Jul-2026 20:51:27 | - Other compatible attributes: |
| 02-Jul-2026 20:51:27 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 02-Jul-2026 20:51:27 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 02-Jul-2026 20:51:27 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 02-Jul-2026 20:51:27 | |
| 02-Jul-2026 20:51:27 | * Try: |
| 02-Jul-2026 20:51:27 | > Run with --stacktrace option to get the stack trace. |
| 02-Jul-2026 20:51:27 | > Run with --info or --debug option to get more log output. |
| 02-Jul-2026 20:51:27 | > Run with --scan to get full insights. |
| 02-Jul-2026 20:51:27 | |
| 02-Jul-2026 20:51:27 | * Get more help at https://help.gradle.org |
| 02-Jul-2026 20:51:27 | |
| 02-Jul-2026 20:51:27 | BUILD FAILED in 2s |
| 02-Jul-2026 20:51:27 | |
| 02-Jul-2026 20:51:27 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 |
| 02-Jul-2026 20:51:27 | Finished task 'Clover Report' with result: Failed |
| 02-Jul-2026 20:51:27 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 02-Jul-2026 20:51:27 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1... |
| 02-Jul-2026 20:51:27 | Failing task since test cases were expected but none were found. |
| 02-Jul-2026 20:51:27 | Finished task 'TestNG Parser' with result: Failed |
| 02-Jul-2026 20:51:27 | Running post build plugin 'NCover Results Collector' |
| 02-Jul-2026 20:51:27 | Running post build plugin 'Artifact Copier' |
| 02-Jul-2026 20:51:27 | Publishing an artifact: Clover Report (System) |
| 02-Jul-2026 20:51:27 | Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1/build/reports/clover does not exist. |
| 02-Jul-2026 20:51:27 | The artifact hasn't been successfully published after 2.886 ms |
| 02-Jul-2026 20:51:27 | Publishing an artifact: TestNG report |
| 02-Jul-2026 20:51:27 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1/build/reports/tests/test does not exist. |
| 02-Jul-2026 20:51:27 | The artifact hasn't been successfully published after 59.96 μs |
| 02-Jul-2026 20:51:27 | Running post build plugin 'Artifactory Release Management Staging' |
| 02-Jul-2026 20:51:27 | Running post build plugin 'Artifactory Build Info Copier' |
| 02-Jul-2026 20:51:27 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 02-Jul-2026 20:51:27 | Running post build plugin 'npm Cache Cleanup' |
| 02-Jul-2026 20:51:27 | Running post build plugin 'Clover Results Collector' |
| 02-Jul-2026 20:51:27 | Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:build/reports/clover/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1] |
| 02-Jul-2026 20:51:27 | Running post build plugin 'Docker Container Cleanup' |
| 02-Jul-2026 20:51:27 | Finalising the build... |
| 02-Jul-2026 20:51:27 | Stopping timer. |
| 02-Jul-2026 20:51:27 | Build JB-GDB758-JOB1-5 completed. |
| 02-Jul-2026 20:51:27 | Running on server: post build plugin 'NCover Results Collector' |
| 02-Jul-2026 20:51:27 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 02-Jul-2026 20:51:27 | Running on server: post build plugin 'Clover Delta Calculator' |
| 02-Jul-2026 20:51:27 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 02-Jul-2026 20:51:27 | All post build plugins have finished |
| 02-Jul-2026 20:51:27 | Generating build results summary... |
| 02-Jul-2026 20:51:27 | Saving build results to disk... |
| 02-Jul-2026 20:51:27 | Logging substituted variables... |
| 02-Jul-2026 20:51:27 | Indexing build results... |
| 02-Jul-2026 20:51:27 | Finished building JB-GDB758-JOB1-5. |
| 03-Jul-2026 10:59:02 | Build Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5) started building on agent Default Agent |
| 03-Jul-2026 10:59:02 | |
| 03-Jul-2026 10:59:02 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 |
| 03-Jul-2026 10:59:02 | Executing build Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5) |
| 03-Jul-2026 10:59:02 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 03-Jul-2026 10:59:02 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 |
| 03-Jul-2026 10:59:02 | Updating source code to revision: fc34d4a3866803770b43325d3af83ae0731434b9 |
| 03-Jul-2026 10:59:02 | Fetching 'refs/heads/dev/JAL-4688_gitlab_ci' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 03-Jul-2026 10:59:10 | From https://gitlab.jalview.org/jalview/jalview |
| 03-Jul-2026 10:59:10 | * [new branch] dev/JAL-4688_gitlab_ci -> dev/JAL-4688_gitlab_ci |
| 03-Jul-2026 10:59:10 | From https://gitlab.jalview.org/jalview/jalview |
| 03-Jul-2026 10:59:10 | * [new tag] Release_2_11_5_0 -> Release_2_11_5_0 |
| 03-Jul-2026 10:59:10 | * [new tag] Release_2_11_5_1 -> Release_2_11_5_1 |
| 03-Jul-2026 10:59:10 | Checking out revision fc34d4a3866803770b43325d3af83ae0731434b9. |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4320_JAL-4671_swingjs_gradle_plugin_for_jalviewjs does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4671_JAL-4059_SwingJSPlugin_with_updated_SwingJS does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4320_JAL-4671_swingjs_gradle_plugin_for_jalviewjs does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4671_JAL-4059_SwingJSPlugin_with_updated_SwingJS does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4320_JAL-4671_swingjs_gradle_plugin_for_jalviewjs does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4671_JAL-4059_SwingJSPlugin_with_updated_SwingJS does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4320_JAL-4671_swingjs_gradle_plugin_for_jalviewjs does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4671_JAL-4059_SwingJSPlugin_with_updated_SwingJS does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 03-Jul-2026 10:59:10 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 |
| 03-Jul-2026 10:59:10 | * [new branch] development/Release_2_11_5_Branch -> origin/development/Release_2_11_5_Branch |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4320_JAL-4671_swingjs_gradle_plugin_for_jalviewjs does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/epic/JAL-4671_JAL-4059_SwingJSPlugin_with_updated_SwingJS does not point to a valid object! |
| 03-Jul-2026 10:59:10 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 03-Jul-2026 10:59:10 | Already on 'dev/JAL-4688_gitlab_ci' |
| 03-Jul-2026 10:59:10 | Updated source code to revision: fc34d4a3866803770b43325d3af83ae0731434b9 |
| 03-Jul-2026 10:59:10 | Finished task 'Checkout Default Repository' with result: Success |
| 03-Jul-2026 10:59:10 | Running pre-build action: VCS Version Collector |
| 03-Jul-2026 10:59:10 | Running pre-build action: Artifactory Release Staging |
| 03-Jul-2026 10:59:10 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 03-Jul-2026 10:59:10 | Bamboo Artifactory Plugin version: 2.6.2 |
| 03-Jul-2026 10:59:10 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=dev/JAL-4688_gitlab_ci bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_repository_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_48169095_git_branch=dev/JAL-4688_gitlab_ci bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB758-JOB1 bamboo_shortPlanName=dev-JAL-4688_gitlab_ci bamboo_planRepository_name=Jalview Gitlab bamboo_repository_48169095_git_username= LOGNAME=bamboo bamboo_buildNumber=5 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_repository_48169095_name=Jalview Gitlab bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_ManualBuildTriggerReason_stageName=Default Stage bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci bamboo_shortPlanKey=GDB758 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_buildTimeStamp=2026-07-03T10:59:02.692+01:00 bamboo_repository_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_repository_git_branch=dev/JAL-4688_gitlab_ci bamboo_buildResultKey=JB-GDB758-JOB1-5 bamboo_repository_branch_name=dev/JAL-4688_gitlab_ci bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=fc34d4a3866803770b43325d3af83ae0731434b9 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_4=/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport bamboo_repository_48169095_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_branch_name=dev/JAL-4688_gitlab_ci _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972621 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_ManualBuildTriggerReason_userName=jprocter bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planKey=JB-GDB758 bamboo_RerunBuildTriggerReason_noOfRetries=1 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_48169095_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d HOME=/home/bamboo bamboo_planRepository_1_branchName=dev/JAL-4688_gitlab_ci PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 03-Jul-2026 10:59:10 | 2414 |
| 03-Jul-2026 10:59:11 | |
| 03-Jul-2026 10:59:11 | FAILURE: Build failed with an exception. |
| 03-Jul-2026 10:59:11 | |
| 03-Jul-2026 10:59:11 | * What went wrong: |
| 03-Jul-2026 10:59:11 | Could not resolve all files for configuration 'classpath'. |
| 03-Jul-2026 10:59:11 | > Could not resolve org.gradle.toolchains:foojay-resolver:1.0.0. |
| 03-Jul-2026 10:59:11 | Required by: |
| 03-Jul-2026 10:59:11 | unspecified:unspecified:unspecified > org.gradle.toolchains.foojay-resolver-convention:org.gradle.toolchains.foojay-resolver-convention.gradle.plugin:1.0.0 |
| 03-Jul-2026 10:59:11 | > No matching variant of org.gradle.toolchains:foojay-resolver:1.0.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 03-Jul-2026 10:59:11 | - Variant 'javadocElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 03-Jul-2026 10:59:11 | - Incompatible because this component declares documentation and the consumer needed a library |
| 03-Jul-2026 10:59:11 | - Other compatible attributes: |
| 03-Jul-2026 10:59:11 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 03-Jul-2026 10:59:11 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 03-Jul-2026 10:59:11 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 03-Jul-2026 10:59:11 | - Variant 'shadowRuntimeElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a library, packaged as a jar, and its dependencies repackaged (shadow jar): |
| 03-Jul-2026 10:59:11 | - Incompatible because this component declares a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '7.6' and the consumer needed a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 03-Jul-2026 10:59:11 | - Variant 'sourcesElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 03-Jul-2026 10:59:11 | - Incompatible because this component declares documentation and the consumer needed a library |
| 03-Jul-2026 10:59:11 | - Other compatible attributes: |
| 03-Jul-2026 10:59:11 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 03-Jul-2026 10:59:11 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 03-Jul-2026 10:59:11 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 03-Jul-2026 10:59:11 | |
| 03-Jul-2026 10:59:11 | * Try: |
| 03-Jul-2026 10:59:11 | > Run with --stacktrace option to get the stack trace. |
| 03-Jul-2026 10:59:11 | > Run with --info or --debug option to get more log output. |
| 03-Jul-2026 10:59:11 | > Run with --scan to get full insights. |
| 03-Jul-2026 10:59:11 | |
| 03-Jul-2026 10:59:11 | * Get more help at https://help.gradle.org |
| 03-Jul-2026 10:59:11 | |
| 03-Jul-2026 10:59:11 | BUILD FAILED in 976ms |
| 03-Jul-2026 10:59:11 | |
| 03-Jul-2026 10:59:11 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 03-Jul-2026 10:59:11 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 03-Jul-2026 10:59:11 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 03-Jul-2026 10:59:11 | Bamboo Artifactory Plugin version: 2.6.2 |
| 03-Jul-2026 10:59:11 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests #5 (JB-GDB758-JOB1-5)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=dev/JAL-4688_gitlab_ci bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_repository_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_48169095_git_branch=dev/JAL-4688_gitlab_ci bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB758-JOB1 bamboo_shortPlanName=dev-JAL-4688_gitlab_ci bamboo_planRepository_name=Jalview Gitlab bamboo_repository_48169095_git_username= LOGNAME=bamboo bamboo_buildNumber=5 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_repository_48169095_name=Jalview Gitlab bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB758-JOB1-5 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_ManualBuildTriggerReason_stageName=Default Stage bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci bamboo_shortPlanKey=GDB758 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_buildTimeStamp=2026-07-03T10:59:02.692+01:00 bamboo_repository_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_repository_git_branch=dev/JAL-4688_gitlab_ci bamboo_buildResultKey=JB-GDB758-JOB1-5 bamboo_repository_branch_name=dev/JAL-4688_gitlab_ci bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - dev-JAL-4688_gitlab_ci - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=fc34d4a3866803770b43325d3af83ae0731434b9 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_4=/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport bamboo_repository_48169095_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_revision_number=fc34d4a3866803770b43325d3af83ae0731434b9 bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=7848a59605a67d8eaa3d3e8346fd8924f02ab41d bamboo_planRepository_branchDisplayName=dev/JAL-4688_gitlab_ci bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=dev/JAL-4688_gitlab_ci bamboo_repository_48169095_branch_name=dev/JAL-4688_gitlab_ci _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972621 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_ManualBuildTriggerReason_userName=jprocter bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1 bamboo_planKey=JB-GDB758 bamboo_RerunBuildTriggerReason_noOfRetries=1 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_48169095_previous_revision_number=7848a59605a67d8eaa3d3e8346fd8924f02ab41d HOME=/home/bamboo bamboo_planRepository_1_branchName=dev/JAL-4688_gitlab_ci PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 03-Jul-2026 10:59:11 | 2414 |
| 03-Jul-2026 10:59:14 | |
| 03-Jul-2026 10:59:14 | FAILURE: Build failed with an exception. |
| 03-Jul-2026 10:59:14 | |
| 03-Jul-2026 10:59:14 | * What went wrong: |
| 03-Jul-2026 10:59:14 | Could not resolve all files for configuration 'classpath'. |
| 03-Jul-2026 10:59:14 | > Could not resolve org.gradle.toolchains:foojay-resolver:1.0.0. |
| 03-Jul-2026 10:59:14 | Required by: |
| 03-Jul-2026 10:59:14 | unspecified:unspecified:unspecified > org.gradle.toolchains.foojay-resolver-convention:org.gradle.toolchains.foojay-resolver-convention.gradle.plugin:1.0.0 |
| 03-Jul-2026 10:59:14 | > No matching variant of org.gradle.toolchains:foojay-resolver:1.0.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 03-Jul-2026 10:59:14 | - Variant 'javadocElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 03-Jul-2026 10:59:14 | - Incompatible because this component declares documentation and the consumer needed a library |
| 03-Jul-2026 10:59:14 | - Other compatible attributes: |
| 03-Jul-2026 10:59:14 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 03-Jul-2026 10:59:14 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 03-Jul-2026 10:59:14 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 03-Jul-2026 10:59:14 | - Variant 'shadowRuntimeElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a library, packaged as a jar, and its dependencies repackaged (shadow jar): |
| 03-Jul-2026 10:59:14 | - Incompatible because this component declares a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '7.6' and the consumer needed a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 03-Jul-2026 10:59:14 | - Variant 'sourcesElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 03-Jul-2026 10:59:14 | - Incompatible because this component declares documentation and the consumer needed a library |
| 03-Jul-2026 10:59:14 | - Other compatible attributes: |
| 03-Jul-2026 10:59:14 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 03-Jul-2026 10:59:14 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 03-Jul-2026 10:59:14 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 03-Jul-2026 10:59:14 | |
| 03-Jul-2026 10:59:14 | * Try: |
| 03-Jul-2026 10:59:14 | > Run with --stacktrace option to get the stack trace. |
| 03-Jul-2026 10:59:14 | > Run with --info or --debug option to get more log output. |
| 03-Jul-2026 10:59:14 | > Run with --scan to get full insights. |
| 03-Jul-2026 10:59:14 | |
| 03-Jul-2026 10:59:14 | * Get more help at https://help.gradle.org |
| 03-Jul-2026 10:59:14 | |
| 03-Jul-2026 10:59:14 | BUILD FAILED in 3s |
| 03-Jul-2026 10:59:15 | |
| 03-Jul-2026 10:59:15 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 |
| 03-Jul-2026 10:59:15 | Finished task 'Clover Report' with result: Failed |
| 03-Jul-2026 10:59:15 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 03-Jul-2026 10:59:15 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1... |
| 03-Jul-2026 10:59:15 | Failing task since test cases were expected but none were found. |
| 03-Jul-2026 10:59:15 | Finished task 'TestNG Parser' with result: Failed |
| 03-Jul-2026 10:59:15 | Running post build plugin 'NCover Results Collector' |
| 03-Jul-2026 10:59:15 | Running post build plugin 'Artifact Copier' |
| 03-Jul-2026 10:59:15 | Publishing an artifact: Clover Report (System) |
| 03-Jul-2026 10:59:15 | Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1/build/reports/clover does not exist. |
| 03-Jul-2026 10:59:15 | The artifact hasn't been successfully published after 73.38 μs |
| 03-Jul-2026 10:59:15 | Publishing an artifact: TestNG report |
| 03-Jul-2026 10:59:15 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1/build/reports/tests/test does not exist. |
| 03-Jul-2026 10:59:15 | The artifact hasn't been successfully published after 63.10 μs |
| 03-Jul-2026 10:59:15 | Running post build plugin 'Artifactory Release Management Staging' |
| 03-Jul-2026 10:59:15 | Running post build plugin 'Artifactory Build Info Copier' |
| 03-Jul-2026 10:59:15 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 03-Jul-2026 10:59:15 | Running post build plugin 'npm Cache Cleanup' |
| 03-Jul-2026 10:59:15 | Running post build plugin 'Clover Results Collector' |
| 03-Jul-2026 10:59:15 | Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:build/reports/clover/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB758-JOB1] |
| 03-Jul-2026 10:59:15 | Running post build plugin 'Docker Container Cleanup' |
| 03-Jul-2026 10:59:15 | Finalising the build... |
| 03-Jul-2026 10:59:15 | Stopping timer. |
| 03-Jul-2026 10:59:15 | Build JB-GDB758-JOB1-5 completed. |
| 03-Jul-2026 10:59:15 | Running on server: post build plugin 'NCover Results Collector' |
| 03-Jul-2026 10:59:15 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 03-Jul-2026 10:59:15 | Running on server: post build plugin 'Clover Delta Calculator' |
| 03-Jul-2026 10:59:15 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 03-Jul-2026 10:59:15 | All post build plugins have finished |
| 03-Jul-2026 10:59:15 | Generating build results summary... |
| 03-Jul-2026 10:59:15 | Saving build results to disk... |
| 03-Jul-2026 10:59:15 | Logging substituted variables... |
| 03-Jul-2026 10:59:15 | Indexing build results... |
| 03-Jul-2026 10:59:15 | Finished building JB-GDB758-JOB1-5. |