Build: #1 failed
Job: Clover and Tests failed
Build log
The build generated 412 lines of output. Download or view full build log
| 29-Jun-2026 15:53:14 | Build Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail - Clover and Tests #1 (JB-GDB757-JOB1-1) started building on agent Default Agent |
| 29-Jun-2026 15:53:14 | |
| 29-Jun-2026 15:53:14 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 |
| 29-Jun-2026 15:53:14 | Executing build Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail - Clover and Tests #1 (JB-GDB757-JOB1-1) |
| 29-Jun-2026 15:53:14 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 29-Jun-2026 15:53:14 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 |
| 29-Jun-2026 15:53:14 | Updating source code to revision: 479f0f17b7b8a7e9a89d505f560568c0947da9eb |
| 29-Jun-2026 15:53:14 | Fetching 'refs/heads/patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 29-Jun-2026 15:53:14 | Checking out revision 479f0f17b7b8a7e9a89d505f560568c0947da9eb. |
| 29-Jun-2026 15:53:14 | Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1/.git'. |
| 29-Jun-2026 15:53:14 | Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1'... |
| 29-Jun-2026 15:53:14 | done. |
| 29-Jun-2026 15:53:17 | error: unable to write file appletlib.zip |
| 29-Jun-2026 15:53:17 | fatal: cannot create directory at 'appletlib': No space left on device |
| 29-Jun-2026 15:53:18 | Checkout to revision 479f0f17b7b8a7e9a89d505f560568c0947da9eb has failed. |
| 29-Jun-2026 15:53:18 | Warning: failed to checkout source code to directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1', trying to recover... |
| 29-Jun-2026 15:53:18 | Cleaned source directory '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1'... |
| 29-Jun-2026 15:53:18 | Checking out revision 479f0f17b7b8a7e9a89d505f560568c0947da9eb. |
| 29-Jun-2026 15:53:18 | Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1/.git'. |
| 29-Jun-2026 15:53:18 | Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1'... |
| 29-Jun-2026 15:53:18 | done. |
| 29-Jun-2026 15:53:20 | error: unable to write file appletlib.zip |
| 29-Jun-2026 15:53:20 | fatal: cannot create directory at 'appletlib': No space left on device |
| 29-Jun-2026 15:53:20 | Checkout to revision 479f0f17b7b8a7e9a89d505f560568c0947da9eb has failed. |
| 29-Jun-2026 15:53:20 | Updating source code to revision: 479f0f17b7b8a7e9a89d505f560568c0947da9eb |
| 29-Jun-2026 15:53:20 | Fetching 'refs/heads/patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 29-Jun-2026 15:53:20 | Cannot fetch branch 'refs/heads/patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail' from 'https://gitlab.jalview.org/jalview/jalview.git' to source directory '/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0'. fatal: FETCH_HEAD is empty after fetch. |
| 29-Jun-2026 15:53:20 | Warning: failed to retrieve source code to cache directory '/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0', trying to recover... |
| 29-Jun-2026 15:53:20 | Cleaned cache directory '/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0', trying to fetch the code once again... |
| 29-Jun-2026 15:53:20 | Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0/.git'. |
| 29-Jun-2026 15:53:20 | Initialized empty Git repository in /srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0/.git/ |
| 29-Jun-2026 15:53:20 | Fetching 'refs/heads/patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 29-Jun-2026 15:54:27 | From https://gitlab.jalview.org/jalview/jalview |
| 29-Jun-2026 15:54:27 | * [new branch] patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail -> patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail |
| 29-Jun-2026 15:54:28 | From https://gitlab.jalview.org/jalview/jalview |
| 29-Jun-2026 15:54:28 | * [new tag] Develop-2_11_2_0-d20201215 -> Develop-2_11_2_0-d20201215 |
| 29-Jun-2026 15:54:28 | * [new tag] Develop-2_11_2_0-d20210205 -> Develop-2_11_2_0-d20210205 |
| 29-Jun-2026 15:54:28 | * [new tag] Jalview_2_9 -> Jalview_2_9 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_0 -> Release_2_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_01 -> Release_2_01 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_02 -> Release_2_02 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_03 -> Release_2_03 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_04 -> Release_2_04 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_05 -> Release_2_05 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_05b -> Release_2_05b |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_06 -> Release_2_06 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_1 -> Release_2_1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_0 -> Release_2_10_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_0b1 -> Release_2_10_0b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_0b1_final -> Release_2_10_0b1_final |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_0b1_sourcepub -> Release_2_10_0b1_sourcepub |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_2 -> Release_2_10_2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_2b1 -> Release_2_10_2b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_2b2 -> Release_2_10_2b2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_3 -> Release_2_10_3 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_3b1 -> Release_2_10_3b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_4 -> Release_2_10_4 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_4b1 -> Release_2_10_4b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_10_5 -> Release_2_10_5 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_0 -> Release_2_11_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_0 -> Release_2_11_1_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_1 -> Release_2_11_1_1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_2 -> Release_2_11_1_2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_3 -> Release_2_11_1_3 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_4 -> Release_2_11_1_4 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_5 -> Release_2_11_1_5 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_6 -> Release_2_11_1_6 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_1_7 -> Release_2_11_1_7 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_0 -> Release_2_11_2_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_1 -> Release_2_11_2_1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_2 -> Release_2_11_2_2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_3 -> Release_2_11_2_3 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_4 -> Release_2_11_2_4 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_5 -> Release_2_11_2_5 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_2_6 -> Release_2_11_2_6 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_3_0 -> Release_2_11_3_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_3_1 -> Release_2_11_3_1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_3_2 -> Release_2_11_3_2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_3_3 -> Release_2_11_3_3 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_5_0 -> Release_2_11_5_0 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_11_5_1 -> Release_2_11_5_1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_2 -> Release_2_2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_3 -> Release_2_3 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_3_buildfix -> Release_2_3_buildfix |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_4 -> Release_2_4 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_5 -> Release_2_5 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_5_branch -> Release_2_5_branch |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_7 -> Release_2_7 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_8 -> Release_2_8 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_8_0b1 -> Release_2_8_0b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_8_1 -> Release_2_8_1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_8_2 -> Release_2_8_2 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_8_2b1 -> Release_2_8_2b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_9_0b1 -> Release_2_9_0b1 |
| 29-Jun-2026 15:54:28 | * [new tag] Release_2_9_0b2 -> Release_2_9_0b2 |
| 29-Jun-2026 15:54:28 | * [new tag] Root_Release_2_5_Branch -> Root_Release_2_5_Branch |
| 29-Jun-2026 15:54:28 | * [new tag] Root_VamJalview_2_07b+ -> Root_VamJalview_2_07b+ |
| 29-Jun-2026 15:54:28 | * [new tag] start -> start |
| 29-Jun-2026 15:54:28 | Fetching to cache directory '/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0' completed, proceeding with checkout... |
| 29-Jun-2026 15:54:28 | Checking out revision 479f0f17b7b8a7e9a89d505f560568c0947da9eb. |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4530_applescript_to_detect_Applications_symlink does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Not_Shown_in_v2_12 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Preferences does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4623_JAL-4624_PCA_for_SS does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4647_replace_deprecated_constructors-Release_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/citation.cff does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/development/JAL-4576_ligysis does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4366_JAL-4386_JAL-4435_3di_msafromstructure_msacomp does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL_4542_highlight_selected_annot_labels_tree_nodes does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4587_colour_group_annotation does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4560_handle_relative_paths_in_jvl_files does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4620_faster_sim_matrices does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/main does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-3848_slivka_java_client_update_06d3659 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4107_singleThreadTests does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4410_multimers_from_3dbeacons does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4414_for_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4478_r212_initialpatch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4590_remove_isBlank_use does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4644_add_resources_for_testng does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4672_for_2115_pdbe_query does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/releases/Release_2_11_4_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/saved/JAL-4320_JAL-4644_refactor_directory_structure-with_nearly_working_openclover does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/JAL-4576_ligysis_exploration does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/na_hack_JAL-4673 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/test/JAL-4603_test_for_JAL-4603_in_progress does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4530_applescript_to_detect_Applications_symlink does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Not_Shown_in_v2_12 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Preferences does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4623_JAL-4624_PCA_for_SS does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4647_replace_deprecated_constructors-Release_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/citation.cff does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/development/JAL-4576_ligysis does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4366_JAL-4386_JAL-4435_3di_msafromstructure_msacomp does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL_4542_highlight_selected_annot_labels_tree_nodes does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4587_colour_group_annotation does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4560_handle_relative_paths_in_jvl_files does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4620_faster_sim_matrices does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/main does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-3848_slivka_java_client_update_06d3659 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4107_singleThreadTests does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4410_multimers_from_3dbeacons does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4414_for_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4478_r212_initialpatch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4590_remove_isBlank_use does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4644_add_resources_for_testng does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4672_for_2115_pdbe_query does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/releases/Release_2_11_4_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/saved/JAL-4320_JAL-4644_refactor_directory_structure-with_nearly_working_openclover does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/JAL-4576_ligysis_exploration does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/na_hack_JAL-4673 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/test/JAL-4603_test_for_JAL-4603_in_progress does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4530_applescript_to_detect_Applications_symlink does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Not_Shown_in_v2_12 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Preferences does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4623_JAL-4624_PCA_for_SS does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4647_replace_deprecated_constructors-Release_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/citation.cff does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/development/JAL-4576_ligysis does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4366_JAL-4386_JAL-4435_3di_msafromstructure_msacomp does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL_4542_highlight_selected_annot_labels_tree_nodes does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4587_colour_group_annotation does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4560_handle_relative_paths_in_jvl_files does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4620_faster_sim_matrices does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/main does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-3848_slivka_java_client_update_06d3659 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4107_singleThreadTests does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4410_multimers_from_3dbeacons does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4414_for_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4478_r212_initialpatch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4590_remove_isBlank_use does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4644_add_resources_for_testng does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4672_for_2115_pdbe_query does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/releases/Release_2_11_4_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/saved/JAL-4320_JAL-4644_refactor_directory_structure-with_nearly_working_openclover does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/JAL-4576_ligysis_exploration does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/na_hack_JAL-4673 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/test/JAL-4603_test_for_JAL-4603_in_progress does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4530_applescript_to_detect_Applications_symlink does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Not_Shown_in_v2_12 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Preferences does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4623_JAL-4624_PCA_for_SS does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4647_replace_deprecated_constructors-Release_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/citation.cff does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/development/JAL-4576_ligysis does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4366_JAL-4386_JAL-4435_3di_msafromstructure_msacomp does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL_4542_highlight_selected_annot_labels_tree_nodes does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4587_colour_group_annotation does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4560_handle_relative_paths_in_jvl_files does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4620_faster_sim_matrices does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/main does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-3848_slivka_java_client_update_06d3659 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4107_singleThreadTests does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4410_multimers_from_3dbeacons does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4414_for_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4478_r212_initialpatch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4590_remove_isBlank_use does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4644_add_resources_for_testng does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4672_for_2115_pdbe_query does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/releases/Release_2_11_4_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/saved/JAL-4320_JAL-4644_refactor_directory_structure-with_nearly_working_openclover does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/JAL-4576_ligysis_exploration does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/na_hack_JAL-4673 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/test/JAL-4603_test_for_JAL-4603_in_progress does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4530_applescript_to_detect_Applications_symlink does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Not_Shown_in_v2_12 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4611_SSConsensus_Preferences does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4623_JAL-4624_PCA_for_SS does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/bug/JAL-4647_replace_deprecated_constructors-Release_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/citation.cff does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/development/JAL-4576_ligysis does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4366_JAL-4386_JAL-4435_3di_msafromstructure_msacomp does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL-4478_multimer_pae_import does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/feature/JAL_4542_highlight_selected_annot_labels_tree_nodes does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4219_extended_fasta_rna_ss does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/features/JAL-4587_colour_group_annotation does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4560_handle_relative_paths_in_jvl_files does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/improvement/JAL-4620_faster_sim_matrices does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/main does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-3848_slivka_java_client_update_06d3659 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4107_singleThreadTests does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4410_multimers_from_3dbeacons does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4414_for_2_11_5_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4478_r212_initialpatch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4590_remove_isBlank_use does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4644_add_resources_for_testng does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4658_quick_patch_for_clustering_histograms_of_counts does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/patch/JAL-4672_for_2115_pdbe_query does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/releases/Release_2_11_4_Branch does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/saved/JAL-4320_JAL-4644_refactor_directory_structure-with_nearly_working_openclover does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/JAL-4576_ligysis_exploration does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/spike/na_hack_JAL-4673 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/remotes/origin/test/JAL-4603_test_for_JAL-4603_in_progress does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Archived_Release_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Jalview_2_4_0b2 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_10_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_2_7 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_11_4_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_4_0 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_5_1 does not point to a valid object! |
| 29-Jun-2026 15:54:28 | error: refs/tags/Release_2_6_1 does not point to a valid object! |
| 29-Jun-2026 15:54:31 | Switched to a new branch 'patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail' |
| 29-Jun-2026 15:54:31 | Branch patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail set up to track remote branch patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail from origin. |
| 29-Jun-2026 15:54:31 | Updated source code to revision: 479f0f17b7b8a7e9a89d505f560568c0947da9eb |
| 29-Jun-2026 15:54:31 | Finished task 'Checkout Default Repository' with result: Success |
| 29-Jun-2026 15:54:31 | Running pre-build action: VCS Version Collector |
| 29-Jun-2026 15:54:31 | Running pre-build action: Artifactory Release Staging |
| 29-Jun-2026 15:54:31 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 29-Jun-2026 15:54:31 | Bamboo Artifactory Plugin version: 2.6.2 |
| 29-Jun-2026 15:54:31 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail - Clover and Tests #1 (JB-GDB757-JOB1-1)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_repository_revision_number=479f0f17b7b8a7e9a89d505f560568c0947da9eb bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB757-JOB1-1 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_repository_48169088_branch_name=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_buildKey=JB-GDB757-JOB1 bamboo_shortPlanName=patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=1 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB757-JOB1-1 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_shortPlanKey=GDB757 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=479f0f17b7b8a7e9a89d505f560568c0947da9eb bamboo_buildTimeStamp=2026-06-29T15:53:14.331+01:00 bamboo_repository_git_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_buildResultKey=JB-GDB757-JOB1-1 bamboo_repository_branch_name=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=479f0f17b7b8a7e9a89d505f560568c0947da9eb SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_repository_48169088_revision_number=479f0f17b7b8a7e9a89d505f560568c0947da9eb bamboo_planRepository_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_branchDisplayName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972607 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_repository_48169088_git_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 bamboo_repository_48169088_name=Jalview Gitlab bamboo_planKey=JB-GDB757 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_48169088_git_username= bamboo_repository_48169088_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git HOME=/home/bamboo bamboo_planRepository_1_branchName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 29-Jun-2026 15:54:31 | 2414 |
| 29-Jun-2026 15:54:32 | Starting a Gradle Daemon (subsequent builds will be faster) |
| 29-Jun-2026 15:54:36 | |
| 29-Jun-2026 15:54:36 | FAILURE: Build failed with an exception. |
| 29-Jun-2026 15:54:36 | |
| 29-Jun-2026 15:54:36 | * What went wrong: |
| 29-Jun-2026 15:54:36 | Could not resolve all files for configuration 'classpath'. |
| 29-Jun-2026 15:54:36 | > Could not resolve org.gradle.toolchains:foojay-resolver:1.0.0. |
| 29-Jun-2026 15:54:36 | Required by: |
| 29-Jun-2026 15:54:36 | unspecified:unspecified:unspecified > org.gradle.toolchains.foojay-resolver-convention:org.gradle.toolchains.foojay-resolver-convention.gradle.plugin:1.0.0 |
| 29-Jun-2026 15:54:36 | > No matching variant of org.gradle.toolchains:foojay-resolver:1.0.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 29-Jun-2026 15:54:36 | - Variant 'javadocElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 29-Jun-2026 15:54:36 | - Incompatible because this component declares documentation and the consumer needed a library |
| 29-Jun-2026 15:54:36 | - Other compatible attributes: |
| 29-Jun-2026 15:54:36 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 29-Jun-2026 15:54:36 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 29-Jun-2026 15:54:36 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 29-Jun-2026 15:54:36 | - Variant 'shadowRuntimeElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a library, packaged as a jar, and its dependencies repackaged (shadow jar): |
| 29-Jun-2026 15:54:36 | - Incompatible because this component declares a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '7.6' and the consumer needed a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 29-Jun-2026 15:54:36 | - Variant 'sourcesElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 29-Jun-2026 15:54:36 | - Incompatible because this component declares documentation and the consumer needed a library |
| 29-Jun-2026 15:54:36 | - Other compatible attributes: |
| 29-Jun-2026 15:54:36 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 29-Jun-2026 15:54:36 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 29-Jun-2026 15:54:36 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 29-Jun-2026 15:54:36 | |
| 29-Jun-2026 15:54:36 | * Try: |
| 29-Jun-2026 15:54:36 | > Run with --stacktrace option to get the stack trace. |
| 29-Jun-2026 15:54:36 | > Run with --info or --debug option to get more log output. |
| 29-Jun-2026 15:54:36 | > Run with --scan to get full insights. |
| 29-Jun-2026 15:54:36 | |
| 29-Jun-2026 15:54:36 | * Get more help at https://help.gradle.org |
| 29-Jun-2026 15:54:36 | |
| 29-Jun-2026 15:54:36 | BUILD FAILED in 4s |
| 29-Jun-2026 15:54:36 | |
| 29-Jun-2026 15:54:36 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 29-Jun-2026 15:54:36 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 29-Jun-2026 15:54:36 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 29-Jun-2026 15:54:36 | Bamboo Artifactory Plugin version: 2.6.2 |
| 29-Jun-2026 15:54:36 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail - Clover and Tests #1 (JB-GDB757-JOB1-1)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_repository_revision_number=479f0f17b7b8a7e9a89d505f560568c0947da9eb bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB757-JOB1-1 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_repository_48169088_branch_name=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_buildKey=JB-GDB757-JOB1 bamboo_shortPlanName=patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=1 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB757-JOB1-1 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_shortPlanKey=GDB757 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=479f0f17b7b8a7e9a89d505f560568c0947da9eb bamboo_buildTimeStamp=2026-06-29T15:53:14.331+01:00 bamboo_repository_git_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_buildResultKey=JB-GDB757-JOB1-1 bamboo_repository_branch_name=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4320_JAL-4671_fix_hidpi_mockitofail - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=479f0f17b7b8a7e9a89d505f560568c0947da9eb SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_repository_48169088_revision_number=479f0f17b7b8a7e9a89d505f560568c0947da9eb bamboo_planRepository_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_branchDisplayName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972607 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_repository_48169088_git_branch=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1 bamboo_repository_48169088_name=Jalview Gitlab bamboo_planKey=JB-GDB757 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= bamboo_repository_48169088_git_username= bamboo_repository_48169088_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git HOME=/home/bamboo bamboo_planRepository_1_branchName=patch/JAL-4320_JAL-4671_fix_hidpi_mockitofail PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 29-Jun-2026 15:54:36 | 2414 |
| 29-Jun-2026 15:54:39 | |
| 29-Jun-2026 15:54:39 | FAILURE: Build failed with an exception. |
| 29-Jun-2026 15:54:39 | |
| 29-Jun-2026 15:54:39 | * What went wrong: |
| 29-Jun-2026 15:54:39 | Could not resolve all files for configuration 'classpath'. |
| 29-Jun-2026 15:54:39 | > Could not resolve org.gradle.toolchains:foojay-resolver:1.0.0. |
| 29-Jun-2026 15:54:39 | Required by: |
| 29-Jun-2026 15:54:39 | unspecified:unspecified:unspecified > org.gradle.toolchains.foojay-resolver-convention:org.gradle.toolchains.foojay-resolver-convention.gradle.plugin:1.0.0 |
| 29-Jun-2026 15:54:39 | > No matching variant of org.gradle.toolchains:foojay-resolver:1.0.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 29-Jun-2026 15:54:39 | - Variant 'javadocElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 29-Jun-2026 15:54:39 | - Incompatible because this component declares documentation and the consumer needed a library |
| 29-Jun-2026 15:54:39 | - Other compatible attributes: |
| 29-Jun-2026 15:54:39 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 29-Jun-2026 15:54:39 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 29-Jun-2026 15:54:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 29-Jun-2026 15:54:39 | - Variant 'shadowRuntimeElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a library, packaged as a jar, and its dependencies repackaged (shadow jar): |
| 29-Jun-2026 15:54:39 | - Incompatible because this component declares a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '7.6' and the consumer needed a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 29-Jun-2026 15:54:39 | - Variant 'sourcesElements' capability org.gradle.toolchains:foojay-resolver:1.0.0 declares a runtime of a component, and its dependencies declared externally: |
| 29-Jun-2026 15:54:39 | - Incompatible because this component declares documentation and the consumer needed a library |
| 29-Jun-2026 15:54:39 | - Other compatible attributes: |
| 29-Jun-2026 15:54:39 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 29-Jun-2026 15:54:39 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 29-Jun-2026 15:54:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 29-Jun-2026 15:54:39 | |
| 29-Jun-2026 15:54:39 | * Try: |
| 29-Jun-2026 15:54:39 | > Run with --stacktrace option to get the stack trace. |
| 29-Jun-2026 15:54:39 | > Run with --info or --debug option to get more log output. |
| 29-Jun-2026 15:54:39 | > Run with --scan to get full insights. |
| 29-Jun-2026 15:54:39 | |
| 29-Jun-2026 15:54:39 | * Get more help at https://help.gradle.org |
| 29-Jun-2026 15:54:39 | |
| 29-Jun-2026 15:54:39 | BUILD FAILED in 2s |
| 29-Jun-2026 15:54:40 | |
| 29-Jun-2026 15:54:40 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 |
| 29-Jun-2026 15:54:40 | Finished task 'Clover Report' with result: Failed |
| 29-Jun-2026 15:54:40 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 29-Jun-2026 15:54:40 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1... |
| 29-Jun-2026 15:54:40 | Failing task since test cases were expected but none were found. |
| 29-Jun-2026 15:54:40 | Finished task 'TestNG Parser' with result: Failed |
| 29-Jun-2026 15:54:40 | Running post build plugin 'NCover Results Collector' |
| 29-Jun-2026 15:54:40 | Running post build plugin 'Artifact Copier' |
| 29-Jun-2026 15:54:40 | Publishing an artifact: Clover Report (System) |
| 29-Jun-2026 15:54:40 | Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1/build/reports/clover does not exist. |
| 29-Jun-2026 15:54:40 | The artifact hasn't been successfully published after 363.1 μs |
| 29-Jun-2026 15:54:40 | Publishing an artifact: TestNG report |
| 29-Jun-2026 15:54:40 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1/build/reports/tests/test does not exist. |
| 29-Jun-2026 15:54:40 | The artifact hasn't been successfully published after 55.82 μs |
| 29-Jun-2026 15:54:40 | Running post build plugin 'Artifactory Release Management Staging' |
| 29-Jun-2026 15:54:40 | Running post build plugin 'Artifactory Build Info Copier' |
| 29-Jun-2026 15:54:40 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 29-Jun-2026 15:54:40 | Running post build plugin 'npm Cache Cleanup' |
| 29-Jun-2026 15:54:40 | Running post build plugin 'Clover Results Collector' |
| 29-Jun-2026 15:54:40 | Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:build/reports/clover/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB757-JOB1] |
| 29-Jun-2026 15:54:40 | Running post build plugin 'Docker Container Cleanup' |
| 29-Jun-2026 15:54:40 | Finalising the build... |
| 29-Jun-2026 15:54:40 | Stopping timer. |
| 29-Jun-2026 15:54:40 | Build JB-GDB757-JOB1-1 completed. |
| 29-Jun-2026 15:54:40 | Running on server: post build plugin 'NCover Results Collector' |
| 29-Jun-2026 15:54:40 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-Jun-2026 15:54:40 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-Jun-2026 15:54:40 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-Jun-2026 15:54:40 | All post build plugins have finished |
| 29-Jun-2026 15:54:40 | Generating build results summary... |
| 29-Jun-2026 15:54:40 | Saving build results to disk... |
| 29-Jun-2026 15:54:40 | Logging substituted variables... |
| 29-Jun-2026 15:54:40 | Indexing build results... |
| 29-Jun-2026 15:54:40 | Finished building JB-GDB757-JOB1-1. |