Clover icon

Coverage Report

  1. Project Clover database Fri Jul 3 2026 14:09:54 BST
  2. Package jalview.datamodel

File ContactRange.java

 

Coverage histogram

../../img/srcFileCovDistChart7.png
30% of files have more coverage

Code metrics

0
21
15
1
183
77
15
0.71
1.4
15
1

Classes

Class Line # Actions
ContactRange 29 21 15
0.666666766.7%
 

Contributing tests

This file is covered by 61 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.datamodel;
22   
23    /**
24    * bean for max/min positions for a given range
25    *
26    * @author jprocter
27    *
28    */
 
29    public class ContactRange
30    {
31    int minPos;
32   
33    double min;
34   
35    int maxPos;
36   
37    double max;
38   
39    int from_column, to_column;
40   
41    private double mean;
42   
43    /**
44    * update the bean with given values
45    *
46    * @param from_column
47    * @param to_column
48    * @param minPos
49    * @param min
50    * @param maxPos
51    * @param max
52    */
 
53  0 toggle public void update(int from_column, int to_column, int minPos, double min,
54    int maxPos, double max, double mean)
55    {
56  0 this.from_column = from_column;
57  0 this.to_column = to_column;
58  0 this.minPos = minPos;
59  0 this.min = min;
60  0 this.maxPos = maxPos;
61  0 this.max = max;
62  0 this.mean = mean;
63    }
64   
65    /**
66    * @return the minPos
67    */
 
68  0 toggle public int getMinPos()
69    {
70  0 return minPos;
71    }
72   
73    /**
74    * @param minPos
75    * the minPos to set
76    */
 
77  665034 toggle public void setMinPos(int minPos)
78    {
79  665034 this.minPos = minPos;
80    }
81   
82    /**
83    * @return the min
84    */
 
85  2507340 toggle public double getMin()
86    {
87  2507340 return min;
88    }
89   
90    /**
91    * @param min
92    * the min to set
93    */
 
94  665036 toggle public void setMin(double min)
95    {
96  665036 this.min = min;
97    }
98   
99    /**
100    * @return the maxPos
101    */
 
102  0 toggle public int getMaxPos()
103    {
104  0 return maxPos;
105    }
106   
107    /**
108    * @param maxPos
109    * the maxPos to set
110    */
 
111  665034 toggle public void setMaxPos(int maxPos)
112    {
113  665034 this.maxPos = maxPos;
114    }
115   
116    /**
117    * @return the max
118    */
 
119  2507341 toggle public double getMax()
120    {
121  2507341 return max;
122    }
123   
124    /**
125    * @param max
126    * the max to set
127    */
 
128  665035 toggle public void setMax(double max)
129    {
130  665035 this.max = max;
131    }
132   
133    /**
134    * @return the mean
135    */
 
136  339317 toggle public double getMean()
137    {
138  339317 return mean;
139    }
140   
141    /**
142    * @param mean
143    * the mean to set
144    */
 
145  339316 toggle public void setMean(double mean)
146    {
147  339317 this.mean = mean;
148    }
149   
150    /**
151    * @return the from_column
152    */
 
153  160 toggle public int getFrom_column()
154    {
155  160 return from_column;
156    }
157   
158    /**
159    * @param from_column
160    * the from_column to set
161    */
 
162  339318 toggle public void setFrom_column(int from_column)
163    {
164  339318 this.from_column = from_column;
165    }
166   
167    /**
168    * @return the to_column
169    */
 
170  80 toggle public int getTo_column()
171    {
172  80 return to_column;
173    }
174   
175    /**
176    * @param to_column
177    * the to_column to set
178    */
 
179  339318 toggle public void setTo_column(int to_column)
180    {
181  339318 this.to_column = to_column;
182    }
183    }
  • Report generated by OpenClover v 4.4.1 on Fri Jul 3 2026 14:18:07 BST using coverage data from Fri Jul 3 2026 14:17:56 BST.
  • OpenClover is free and open-source software.