Package	Files	Average Method Complexity	TOTAL Coverage
jalview.analysis.scoremodels jalview.analysis.scoremodels	10.0 10	2.7714286 2.77	0.61264014 0.6126401461.3%

Class	Methods	Average Method Complexity	TOTAL Coverage
SmithWatermanModel SmithWatermanModel	7.0 7	1.5714285 1.57	0.0 0.00%
ValueAnnotationDistanceModel ValueAnnotationDistanceModel	13.0 13	4.4615383 4.46	0.013824885 0.0138248851.4%
SimilarityParams SimilarityParams	11.0 11	2.0 2	0.27941176 0.2794117627.9%
SimilarityScoreModel SimilarityScoreModel	2.0 2	1.0 1	0.5 0.550%
PIDModel PIDModel	12.0 12	2.8333333 2.83	0.6728972 0.672897267.3%
FeatureDistanceModel FeatureDistanceModel	10.0 10	2.5 2.5	0.8352941 0.835294183.5%
SecondaryStructureDistanceModel SecondaryStructureDistanceModel	12.0 12	3.9166667 3.92	0.89506173 0.8950617389.5%
ScoreModels ScoreModels	11.0 11	1.4545455 1.45	0.9183673 0.918367391.8%
ScoreMatrix ScoreMatrix	25.0 25	2.96 2.96	0.962963 0.96296396.3%
DistanceScoreModel DistanceScoreModel	2.0 2	1.0 1	1.0 1.0100%