Project overview

Branches:

40,812

Statements:

110,859

Methods:

16,719

Classes:

1,538

Files:

1,213

Packages:

132

LOC:

428,337

NCLOC:

267,378

Total complexity:

45,768

Complexity density:

0.41

Statements/Method:

6.63

Methods/Class:

10.87

Classes/Package:

11.65

Average method complexity:

2.74

1.	0.00%	Bits.letter_f() : void 1
2.	0.00%	RestJobThread.realiseResults(boolean) : void 57
3.	0.00%	VamsasAppDatastore.storeVAMSAS(AlignViewport,String) : boolean 57
4.	0.00%	VamsasAppDatastore.updateToJalview() : int 50
5.	0.00%	AlignFrame.paste(boolean) : void 48
6.	0.00%	AppletParams.addParam(List<String>,String,Object,AppletParams,String) : void 77
7.	0.00%	Launcher.main(String[]) : void 48
8.	0.00%	JSONParser.parse(Reader,ContentHandler,boolean) : void 50
9.	0.00%	JSONML.parse(XMLTokener,boolean,JSONArray,boolean) : Object 48
10.	0.00%	Preferences.ok_actionPerformed(ActionEvent) : void 19
11.	0.00%	XML.parse(XMLTokener,JSONObject,String,boolean) : boolean 37
12.	0.00%	SimpleBlastFile.parse() : void 43
13.	0.00%	VamsasAppDatastore.getjAlignmentAnnotation(jalview.datamodel.AlignmentI,uk.ac.vamsas.objects.core.RangeAnnotation) : jalview.datamodel.AlignmentAnnotation 43
14.	0.00%	GroupUrlLink.makeUrlsIf(boolean,Hashtable,boolean) : Object[] 42
15.	0.00%	ccAnalysis.run() : MatrixI 21
16.	0.00%	SeqPanel.doEditSequence(boolean,boolean,int,int,boolean,SequenceGroup) : boolean 46
17.	0.00%	VamsasApplication.handleMessage(Message) : void 37
18.	0.00%	DBRefFetcher.transferReferences(Vector<SequenceI>,DbSourceProxy,AlignmentI,boolean,List<String>) : boolean 31
19.	0.00%	Bits.lower_f() : void 1
20.	0.00%	Bits.title_f() : void 1

Coverage Report