Coverage Report
File SecStructPredAction.java
Coverage histogram
30% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| SecStructPredAction | 16 | 8 | 5 | ||
| SecStructPredAction.Builder | 18 | 5 | 3 |
Contributing tests
This file is covered by 36 tests.
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Source view
| 1 | package jalview.ws2.actions.secstructpred; | |
| 2 | ||
| 3 | import java.util.List; | |
| 4 | import java.util.Objects; | |
| 5 | ||
| 6 | import jalview.api.AlignViewportI; | |
| 7 | import jalview.datamodel.AlignmentI; | |
| 8 | import jalview.viewmodel.AlignmentViewport; | |
| 9 | import jalview.ws.params.ArgumentI; | |
| 10 | import jalview.ws2.actions.BaseAction; | |
| 11 | import jalview.ws2.actions.BaseTask; | |
| 12 | import jalview.ws2.api.Credentials; | |
| 13 | import jalview.ws2.client.api.SecStructPredWebServiceClientI; | |
| 14 | import jalview.ws2.client.api.WebServiceClientI; | |
| 15 | ||
| 16 | public class SecStructPredAction extends BaseAction<AlignmentI> | |
| 17 | { | |
| 18 | public static class Builder extends BaseAction.Builder<SecStructPredAction> | |
| 19 | { | |
| 20 | protected SecStructPredWebServiceClientI client; | |
| 21 | ||
| 22 | protected boolean msaMode; | |
| 23 | ||
| 24 | 100 |  private Builder(SecStructPredWebServiceClientI client) |
| 25 | { | |
| 26 | 100 | super(); |
| 27 | 100 | Objects.requireNonNull(client); |
| 28 | 100 | this.client = client; |
| 29 | } | |
| 30 | ||
| 31 | 100 | public void msaMode(boolean msa) |
| 32 | { | |
| 33 | 100 | this.msaMode = msa; |
| 34 | } | |
| 35 | ||
| 36 | 100 | public SecStructPredAction build() |
| 37 | { | |
| 38 | 100 | return new SecStructPredAction(this); |
| 39 | } | |
| 40 | } | |
| 41 | ||
| 42 | 100 | public static Builder newBuilder(SecStructPredWebServiceClientI client) |
| 43 | { | |
| 44 | 100 | return new Builder(client); |
| 45 | } | |
| 46 | ||
| 47 | protected final SecStructPredWebServiceClientI client; | |
| 48 | ||
| 49 | protected boolean msaMode; | |
| 50 | ||
| 51 | 100 | public SecStructPredAction(Builder builder) |
| 52 | { | |
| 53 | 100 | super(builder); |
| 54 | 100 | client = builder.client; |
| 55 | 100 | msaMode = builder.msaMode; |
| 56 | } | |
| 57 | ||
| 58 | 0 | public BaseTask<?, AlignmentI> createTask(AlignViewportI viewport, |
| 59 | List<ArgumentI> args, Credentials credentials) | |
| 60 | { | |
| 61 | 0 | if (msaMode) |
| 62 | 0 | return new SecStructPredMsaTask(client, args, credentials, viewport); |
| 63 | else | |
| 64 | 0 | return new SecStructPredPDBSearchTask(client, args, credentials, viewport); |
| 65 | } | |
| 66 | ||
| 67 | 0 | @Override |
| 68 | public boolean isActive(AlignmentViewport viewport) | |
| 69 | { | |
| 70 | 0 | return false; |
| 71 | } | |
| 72 | } |