Project	Packages	Average Method Complexity	TOTAL Coverage
Clover database Thu Dec 4 2025 16:11:35 GMT Clover database Thu Dec 4 2025 16:11:35 GMT	55.0 55	1.5427234 1.54	0.8998805 0.899880590%

Package	Files	Average Method Complexity	TOTAL Coverage
jalview.ext.paradise jalview.ext.paradise	1.0 1	3.4 3.4	0.0 0.00%
jalview.hmmer jalview.hmmer	1.0 1	1.2 1.2	0.0 0.00%
jalview.ws.jabaws jalview.ws.jabaws	5.0 5	2.8888888 2.89	0.0 0.00%
jalview.ws.jws2 jalview.ws.jws2	1.0 1	2.1666667 2.17	0.0 0.00%
jalview.ws.utils jalview.ws.utils	1.0 1	2.5 2.5	0.0 0.00%
jalview.ws jalview.ws	2.0 2	4.181818 4.18	0.08695652 0.086956528.7%
jalview.ws.seqfetcher jalview.ws.seqfetcher	1.0 1	1.5555556 1.56	0.36363637 0.3636363736.4%
jalview.fts.service.pdb jalview.fts.service.pdb	2.0 2	1.9 1.9	0.4027778 0.402777840.3%
jalview.ws.sifts jalview.ws.sifts	1.0 1	1.1923077 1.19	0.43773586 0.4377358643.8%
jalview.structure jalview.structure	5.0 5	2.764706 2.76	0.5202864 0.520286452%
jalview.ext.android jalview.ext.android	3.0 3	2.5 2.5	0.625 0.62562.5%
jalview.ext.rbvi.chimera jalview.ext.rbvi.chimera	3.0 3	1.2807018 1.28	0.6312849 0.631284963.1%
jalview.fts.threedbeacons jalview.fts.threedbeacons	2.0 2	1.4666667 1.47	0.64285713 0.6428571364.3%
jalview.testutils jalview.testutils	1.0 1	2.1666667 2.17	0.6744186 0.674418667.4%
jalview.renderer jalview.renderer	6.0 6	1.1794872 1.18	0.7649667 0.764966776.5%
jalview.viewmodel.styles jalview.viewmodel.styles	1.0 1	5.1666665 5.17	0.7844828 0.784482878.4%
jalview.ext.htsjdk jalview.ext.htsjdk	2.0 2	1.1111112 1.11	0.8220339 0.822033982.2%
jalview.io jalview.io	31.0 31	2.0313725 2.03	0.85570186 0.8557018685.6%
jalview.fts.core jalview.fts.core	1.0 1	1.55 1.55	0.8604651 0.860465186%
jalview.structures.models jalview.structures.models	1.0 1	1.3913044 1.39	0.8678161 0.867816186.8%
jalview.ws.dbsources jalview.ws.dbsources	9.0 9	1.05 1.05	0.8686679 0.868667986.9%
jalview.math jalview.math	3.0 3	2.2051282 2.21	0.8719723 0.871972387.2%
jalview.bin jalview.bin	8.0 8	2.016129 2.02	0.8798587 0.879858788%
jalview.util jalview.util	26.0 26	1.4528302 1.45	0.88116664 0.8811666488.1%
jalview.ext.ensembl jalview.ext.ensembl	9.0 9	1.0555556 1.06	0.8993056 0.899305689.9%
jalview.ws2.client.slivka jalview.ws2.client.slivka	1.0 1	1.0789474 1.08	0.90052354 0.9005235490.1%
jalview.ws.rest jalview.ws.rest	1.0 1	2.0 2	0.90909094 0.9090909490.9%
jalview.gui jalview.gui	32.0 32	1.5066079 1.51	0.91980624 0.9198062492%
jalview.io.cache jalview.io.cache	2.0 2	2.0 2	0.9230769 0.923076992.3%
jalview.bin.argparser jalview.bin.argparser	1.0 1	1.92 1.92	0.9254386 0.925438692.5%
jalview.project jalview.project	1.0 1	2.9473684 2.95	0.92687386 0.9268738692.7%
jalview.datamodel jalview.datamodel	37.0 37	1.3834196 1.38	0.95155036 0.9515503695.2%
jalview.analysis jalview.analysis	19.0 19	1.463964 1.46	0.9526066 0.952606695.3%
jalview.ext.jmol jalview.ext.jmol	3.0 3	1.6060606 1.61	0.96307695 0.9630769596.3%
jalview.ext.so jalview.ext.so	1.0 1	1.2 1.2	0.9655172 0.965517296.6%
jalview.commands jalview.commands	2.0 2	1.4418604 1.44	0.97301584 0.9730158497.3%
jalview.workers jalview.workers	2.0 2	1.2105263 1.21	0.9748954 0.974895497.5%
jalview.util.matcher jalview.util.matcher	2.0 2	1.3846154 1.38	0.9851852 0.985185298.5%
jalview.analysis.scoremodels jalview.analysis.scoremodels	5.0 5	1.4081633 1.41	0.9859944 0.985994498.6%
jalview.ws2.actions.alignment jalview.ws2.actions.alignment	1.0 1	1.0714285 1.07	0.9886364 0.988636498.9%
jalview.urls jalview.urls	7.0 7	1.5454545 1.55	0.989011 0.98901198.9%
jalview.gui.structurechooser jalview.gui.structurechooser	2.0 2	1.8 1.8	0.9892473 0.989247398.9%
jalview.schemes jalview.schemes	18.0 18	1.5135136 1.51	0.9898754 0.989875499%
mc_view mc_view	5.0 5	1.0625 1.06	0.99311924 0.9931192499.3%
jalview.renderer.seqfeatures jalview.renderer.seqfeatures	2.0 2	1.12 1.12	0.9931857 0.993185799.3%
jalview.io.gff jalview.io.gff	7.0 7	1.0416666 1.04	0.9979757 0.997975799.8%
jalview.datamodel.features jalview.datamodel.features	5.0 5	1.0434783 1.04	0.998228 0.99822899.8%
jalview.controller jalview.controller	1.0 1	1.0 1	1.0 1.0100%
jalview.ext.pymol jalview.ext.pymol	2.0 2	1.0 1	1.0 1.0100%
jalview.io.vcf jalview.io.vcf	1.0 1	1.375 1.38	1.0 1.0100%
jalview.util.imagemaker jalview.util.imagemaker	1.0 1	1.0 1	1.0 1.0100%
jalview.viewmodel jalview.viewmodel	3.0 3	1.1136364 1.11	1.0 1.0100%
jalview.ws.ebi jalview.ws.ebi	2.0 2	1.1428572 1.14	1.0 1.0100%
jalview.ws2.actions.annotation jalview.ws2.actions.annotation	1.0 1	1.0 1	1.0 1.0100%
jalview.ws2.actions.secstructpred jalview.ws2.actions.secstructpred	2.0 2	1.1428572 1.14	1.0 1.0100%